TCONS_00064303 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064303
Unique NameTCONS_00064303
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length704

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064303 ID=TCONS_00064303|Name=TCONS_00064303|organism=Clytia hemisphaerica|type=transcript|length=704bp
aaacgctatgttttctgactgattttttttcatttttctccttgcattgc
tatctaactttcatcatcaggtaggtccattcagcatctagcttgtttat
tCTCAAAATATACTCTGTTTTTGAAATTATGCATAATATGTAATTTCTTT
TATTAAAGATTTAAGGACGAcataaaataattgaaaatggcaACAAATAC
ATTGAAAGAAATGCTGAcagaattgaaaacaatttGCTCCAGGTGTATAT
TGTGTTATACTACTGCAAATCCTTGCTATAAAACATTTgCTGAACAGGCG
GAtataaatgaaaaacattgtagTTCATGTCTTGGCATTTTGGAACAGAA
CCAAATCCTTAACGTTGTTGATAAgGttgcaaaaaaattgaacaaagaaa
attaCACAACAGACTCCTTTGCATTAGCATTGGCCTTCCCACAATGCCTG
GTTCTAAGAAAGAGAGCATTACTGGCACACATCAAGGAATCTAACTTCTT
CAACACAGAGCTTCACACCACCAAATGCAATGATTTGATGAACCCTAAAG
AAGCTTACAAACTAAGCATTATTAAAACACTGGAACAAGTCACcaagaaa
aaatataacatcAAGGTATTTTATAGAATGTAAATCTATGGGACAAGTtg
gagcttttacaagctcttgcttgtaaaaaaacaattttgctattttttcc
gAAC
Run BLAST on NCBI

transcript from alignment at scaffold_410:106902..108977+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064303 ID=TCONS_00064303|Name=TCONS_00064303|organism=Clytia hemisphaerica|type=transcript|length=2076bp|location=Sequence derived from alignment at scaffold_410:106902..108977+ (Clytia hemisphaerica)
aaacgctatgttttctgactgattttttttcatttttctccttgcattgc
tatctaactttcatcatcaggtaggtccattcagcatctagcttgtttat
tCTCAAAATATACTCTGTTTTTGAAATTATGCATAATATGTAATTTCTTT
TATTAAAGATTTAAGGACGAcataaaataattgaaaatggcaACAAATAC
ATTGAAAGAAATGCTGAcagaattgaaaacaatttGCTCCAGGTGTATAT
TGTGTTATACTACTGCAAATCCTTGCTATAAAACATTTGTAAGTTTTATT
TCCATGATGAGTACATATTGTACATTTCAGtttaaagcttcaaaatttAA
TGCATAAATAGATGAACTTATTACCAATATTTTAGCCTGTAATCCTAAAT
TCAACATCacaccccagctggcacacaacgttttatggaacgttgtgaac
gttagataaacgtcgaaaaaacgttgtgcgCCAGCTAGGACATTTATCga
atttcaatgttttatttggttttatttttcaggCTGAACAGGCGGAtata
aatgaaaaacattgtagTTCATGTCTTGGCATTTTGGAACAGAACCAAAT
CCTTAACGTTGTTGATAAggtttaaaattcattttgggCATATCTAGATG
ATATACTGTAATTATGTAGGGTGTGTTCCTGCCAAATTTTGCTCTTCAAC
CTCAGACACCAAACAGgggaaaatattaaacttttttgaatttttattta
taggtgtatatttcacaggtctcttgacctctacaaaactttctttttta
tactGTTAGACACGAGGGCCTCTAAATTTTGAAGCCCCTTTTTCAAGACT
TTGATTTATGCTTGTTAAGTAACTCTTTATAAGCTATCCTTGCCATTGTT
AGTGTTAGATACATTTTAATTGGTGAATCAATTGTGGGTAACTACCCCTT
CCTCTCGTTGCCCTCAAAATTGAGTATANtttacaattgggcctacgaat
gatttcaaagatactgaagttgagccagtgcggttagcacgttcgacagt
tttTATGTATTTGTATTAGACTCTTTTCTGTTATACTGTTTGTGTGTATT
TgtattaaaatatttcttctaaCATTTACATTCTTAGGttgcaaaaaaat
tgaacaaagaaaattaCACAACAGACTCCTTTGCATTAGCATTGGCCTTC
CCACAATGCCTGGTTCTAAGAAAGgtttattaaaaattttcttgtttttt
gttcGAGTTTTCATAGTTCACACATATAAATCTTTTGTAACTTTTTAGAA
TCGATAACACTAATTGTTCTTGGTTCGAAAATAGAATAACCAAATGAGAT
TTCAGTATAAAATTTTTTCTCCCAataattctttgatttttttacagAGA
GCATTACTGGCACACATCAAGGAATCTAACTTGTAAGCCCTTATCATTTA
TGCTTTAATTGGATAGAGTGTAGCCAAAAAATCTGCCTATGATACCCTTT
TCTTCTATACTGTTGACAAGAGAGCCACATTTTAATACACAATACACCCC
TTCTCAAAATTTTGTGAAGTGTCACAGTTATGAAATTtgtgttgaaattt
tttaattatttcatCTCCGAAACATTCTTTGTCTTTTGACGTGATGTAGA
GAATTCCCATAAAAGTCATTACACGTAAAATAGTCGAGTTTtctaagcca
atcaaattctgacCAAATCCGTTACTGAAGCCAATCTTCATCATAAGAAT
CAAAAAGATTGGATTCACCAGGTTTTTGTTGCTAAAATATAGGTAATACA
GCTACCTGGGCAGTTAAGTGCAATTATAAGTGTTTTCACCTTacataatt
tcaaaatcattacATCCAGCTTCAACACAGAGCTTCACACCACCAAATGC
AATGATTTGATGAACCCTAAAGAAGCTTACAAACTAAGCATTATTAAAAC
ACTGGAACAAGTCACcaagaaaaaatataacatcAAGGTATTTTATAGAA
TGTAAATCTATGGGACAAGTtggagcttttacaagctcttgcttgtaaaa
aaacaattttgctattttttccgAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040311XLOC_040311Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064303-exon-scaffold_410-1491911889:106902..107189TCONS_00064303-exon-scaffold_410-1491911889:106902..107189Clytia hemisphaericaexon
TCONS_00064303-exon-scaffold_410-1510915933:106902..107189TCONS_00064303-exon-scaffold_410-1510915933:106902..107189Clytia hemisphaericaexon
TCONS_00064303-exon-scaffold_410-1575043694:106902..107189TCONS_00064303-exon-scaffold_410-1575043694:106902..107189Clytia hemisphaericaexon
TCONS_00064303-exon-scaffold_410-1491911889:107434..107520TCONS_00064303-exon-scaffold_410-1491911889:107434..107520Clytia hemisphaericaexon
TCONS_00064303-exon-scaffold_410-1510915933:107434..107520TCONS_00064303-exon-scaffold_410-1510915933:107434..107520Clytia hemisphaericaexon
TCONS_00064303-exon-scaffold_410-1575043694:107434..107520TCONS_00064303-exon-scaffold_410-1575043694:107434..107520Clytia hemisphaericaexon
TCONS_00064303-exon-scaffold_410-1491911889:108039..108125TCONS_00064303-exon-scaffold_410-1491911889:108039..108125Clytia hemisphaericaexon
TCONS_00064303-exon-scaffold_410-1510915933:108039..108125TCONS_00064303-exon-scaffold_410-1510915933:108039..108125Clytia hemisphaericaexon
TCONS_00064303-exon-scaffold_410-1575043694:108039..108125TCONS_00064303-exon-scaffold_410-1575043694:108039..108125Clytia hemisphaericaexon
TCONS_00064303-exon-scaffold_410-1491911889:108299..108333TCONS_00064303-exon-scaffold_410-1491911889:108299..108333Clytia hemisphaericaexon
TCONS_00064303-exon-scaffold_410-1510915933:108299..108333TCONS_00064303-exon-scaffold_410-1510915933:108299..108333Clytia hemisphaericaexon
TCONS_00064303-exon-scaffold_410-1575043694:108299..108333TCONS_00064303-exon-scaffold_410-1575043694:108299..108333Clytia hemisphaericaexon
TCONS_00064303-exon-scaffold_410-1491911889:108771..108977TCONS_00064303-exon-scaffold_410-1491911889:108771..108977Clytia hemisphaericaexon
TCONS_00064303-exon-scaffold_410-1510915933:108771..108977TCONS_00064303-exon-scaffold_410-1510915933:108771..108977Clytia hemisphaericaexon
TCONS_00064303-exon-scaffold_410-1575043694:108771..108977TCONS_00064303-exon-scaffold_410-1575043694:108771..108977Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_410supercontigscaffold_410:106902..108977 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
20.6899	20.1065	5.72985	1.72334	3.40463	3.51759	4.45286	3.45191	2.42318	3.70059	2.40772	2.25495	4.15941	2.87202	3.70176	4.55144	4.48947	5.10396	1.10706	1.23763	4.05958	4.43037	13.6297	11.672	5.81428	7.55065	1.4455	1.44339	8.24749	9.66399
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064303 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top