|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064300 ID=TCONS_00064300|Name=TCONS_00064300|organism=Clytia hemisphaerica|type=transcript|length=5658bpRun BLAST on NCBI protein sequence of TCONS_00064300-protein >TCONS_00064300-protein ID=TCONS_00064300-protein|Name=TCONS_00064300-protein|organism=Clytia hemisphaerica|type=polypeptide|length=656bp KEPPAPTKRRDVNIIELIFPSDLLPSNICIESGENSEDKISENIKGRSIERun BLAST on NCBI transcript from alignment at scaffold_410:40264..49758+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064300 ID=TCONS_00064300|Name=TCONS_00064300|organism=Clytia hemisphaerica|type=transcript|length=9495bp|location=Sequence derived from alignment at scaffold_410:40264..49758+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_410:40264..49758+ >TCONS_00064300 ID=TCONS_00064300|Name=TCONS_00064300|organism=Clytia hemisphaerica|type=CDS|length=11826bp|location=Sequence derived from alignment at scaffold_410:40264..49758+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00064300 vs. Swiss-Prot (Human)
Match: DICER (Endoribonuclease Dicer OS=Homo sapiens GN=DICER1 PE=1 SV=3) HSP 1 Score: 96.2857 bits (238), Expect = 1.502e-19 Identity = 77/282 (27.30%), Postives = 132/282 (46.81%), Query Frame = 1
Query: 3856 FVHPDILGHVNKALTQPPPPSYLTTGLHQLEESLGYKFKNKLLPIEGQCHASFAGRLNPWTNSNQRLEFIGDAILELMVTSELIRRNEKDSLSFDQGSLSNIRSAIVCTRTLAVVAARLQLHGGLKILDLPTKILIDDFVE------ALEGLGTKFDEDFYEANVIKAPSDDRFAGAILEIPKDLADCTEAVIGAVYLDTGGNLQETWSIFEPHFADVIDFYVTRSPPSIYIYISHKYPD-SDFIALPRCISGQFGWKW-TKGKRVLESYGRTSKIAKGKLA 4677
F HPD +K L ++L +G E+ + Y+FKNK ++ HAS+ N T+ QRLEF+GDAIL+ ++T L +D G L+++RSA+V A +A + H K + +IDDFV+ ++G+ ++ ++ +D +E+PK + D E++ GA+Y+D+G +L+ W ++ P +I+ + P S + P+ + F R G+ GK + GR+ +IAK A
Sbjct: 1650 FDHPD----ADKTL------NHLISGFENFEKKINYRFKNKAYLLQAFTHASY--HYNTITDCYQRLEFLGDAILDYLITKHLY----EDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSE----------LRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAA 1905 The following BLAST results are available for this feature:
BLAST of TCONS_00064300 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.