TCONS_00064298 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064298
Unique NameTCONS_00064298
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3779

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064298 ID=TCONS_00064298|Name=TCONS_00064298|organism=Clytia hemisphaerica|type=transcript|length=3779bp
ATGTATTTCACTGATATCTGAACTTGAAACATATTTCCAGGATAACAATA
GCATCGTTCTCCAACATATGGCAAACGGCAATCAATCTAAACAAGAAATA
TTGGAACCGCAAAGGATTCTGGTTATTCTCATGTCACTGGATACGTTTTT
GCAAATCAAACCTCATTCTATTGAATGTGTTTTGTTTAACGCACGTGTGA
ATGATTTGAGGATGTATGAAACGGTCAAAAGTATCTTACTGAGAATGAAT
CCTTTAAAAGTTGTACACGTCAAATGTCATGAGAATGAGgtttATTCGCA
ACATTTATGGAACgttttatcaaaagaatatCTGGCTCCACCTTTCTCGA
TGGATCATCGATCCTTGTACAGACTTTGTGGAATGTATTCCTCGTCCATG
TACAGTAAGGTAGACGTCGAAGTTGAACGTAAACCTGATATCGAAAGTGA
AAGTGGTTCCCAGACTCTTATCTATATGCCGATGAGATCAACAATCAAAG
CCATTGCCAAGAGTGATCCATCGGTGTCGAAAACTGATGAATCAGCATTA
CGTCATGCAATCAAGTTGCTGAAAGAGAATCGTGAATTGGACAACAAGGG
AGATGTCTTGAAAAGAATTGAAGCACCTTCGAATTGTCaagaaatgaaag
aatttttcgTACCTCGAATCATGGATGAGAAGGAGGAATTAACAGAACCA
ATCAAATCTCTTTGCCATGGGCAGCCATTGTACGTGTATCGGATGAGGTT
CGCGGAGATGACTTCTAGAGAAGGTGACGTGTCGACCAGTTTTAAAGGAA
TCAACACCGTTGGATTAATATCAACTATCAAAATACCTAAGTTTGAAGAA
ACGTTTTACGATCATTACGGCTCAGTCAATGTTGTTTTGACGGATGACTT
TCAGACCATACTCACCGAAGACGATTTCCAGATAGTTCAAAACTTCAAAa
gagatattttcaaaaatatctacAATCTATTGCCTAATGATGATTCCCTC
GTGTCTACAAAATATGCAATTGTAATGCTGCACCCAAATGAAGATTCCCT
GgattttgaaattatgcatCAAACAACAGCTTACTTTGACTCTCTNCTAC
AAAATATGCAATTGTAATGCTGCACCCAAATGAAGATTCCCTGgattttg
aaattatgcatCAAACAACAGCTTACTTTGACTCTCTCATCAAAGACGTT
GACACTCGAAAAATATTCACGAACACTTTACCGGTAGCCGAAACTATCAT
TTTAGCGGTCCATACTTTACCAAAGATCAGTGCACCAATGTTAGTGCAAA
AACTTCCTCAAAACACCGCACATAAATCTGTATTAGACGAATTTCCTGAT
CAAGAAAAAGCTCCAACTTTCCTTGCTTACTTCAATTCGAAATATGATGT
CAATATCTTAGAGAGTGAATCCATGGTTCCTGTCAAACATTTAAAAACGG
TTTTAAACTCGATAAACACGATCGATTATGCAAAACGACGCAAAAGTAAA
AGCAAACCGAACGAATTGCCCCAGTCTCTTTGTTACTTGTACCCATTCTC
CTTTCCAATATGGCGGATTATCTGCGTGTTTCCATCTTTAGTGTATTATC
TGAAGCAGTACGAAAATGCGAAATCAGTGTTGAGCATTTTGAATGAATTC
AAACTGATCCAAGAAAAATACGAAGAAAATTTGTCACGTTGTAGTCCCTT
GGATCTTTGTGCGAAAGATAGCGGAGTTGTTTCGGACATTCACCNCTGAT
CCAAGAAAAATACGAAGAAAATTTGTCACGTTGTAGTCCCTTGGATCTTT
GTGCGAAAGATAGCGGAGTTGTTTCGGACATTCACCAAGAACACTTAATT
GTTTCAAAAGGGCAGTCCCTCGTTAAGGAGGAGAATCGTCAAAATGATTC
GTCAATATCTGAAGAAGCAGTGTTTGCAATTACCAATAAAAGCGATcttg
aaaatcgggaaaacattcaaaaaatcgGAAGCTTGACCAATGGAGCTCCA
TCGGCCCTTCATCTTGCAGAGCAGAACCAGATGAACCTACTTCTGTCCGA
TAATCAAACGTTGGAGGATTCATGTCTGGCAATTGAAGAACTTAAATCGA
TATCCGAAGATACCAATAAATCTGCGAAATATCCATCCAAAAAACATCCG
ATCCCTGATAATCAATCTCATGATATATGCAATGGTAAAACAACTTTGGG
AAATGTAGCTATGACAGAAATTCCTGGAATTGATGACTTATCGAGCTGGT
CTAACTTTGACGAAAACGGGTGTCATCAAACTCCTATCCAAGACATTGTA
GATTCATCTGAGAATCCAGATCTTGTAAATCGAGTTCGAAAAGCTCTCAT
CTCTAACTCAGCAACCGAAAACATTTCGAATGAGATTTTCGAATATTTTG
GTGATTCAGTTCTCAAATATGTTATAACAATCAATTTGTTTTTGACACGC
CCAGATTTCAATGAGAATTCGTTAAACTTCTTTAAATCACAACTTGTAAG
TAACGAACTGCTTTACAGAATTGGGTTATCGAGGCAATTACGAAGATTTC
TCTTCTATGACAGGTTTGAGCCATCGGACTTAAAATCCTACATGTTCAAT
GATGTTACCTCCGTCTCGCAGACTGAAACGAGTGAATCCTCCGCATCACA
GATTGGATCGATTGATGAGGAACTCACCACTACCAATTCTTCGCATTTTG
AATCTAAGCTATTTCCCATTAACCAAAGCAACAATACCGCTACATCCGTT
TCACAGATTGAATCTAATGACTCTGGTAATCATAGCAATAAAGCAATATC
AGATATGACAGAAGCTCTCATTGGTGCGCTGTTCACACAAAATCATGATG
TCAACCCGCTATGGCTCAATTTTCTCGAATGGCTAGGTTACAAACTGACT
AATTTTCGCCGTCTTTTATCAACTGGTCATTATCAATCCAGCCCATGTGA
CGTTCCTAGTGGAAATAGCACCTTATCTTATTCACAGCAATATTCTTCCT
TCGTCCATCCAGATATTTTAGGACATGTAAACAAAGCTTTAACCCAGCCA
CCACCACCGTCATACCTTACGACCGGTTTACATCAACTGGAAGAATCTCT
TGGTTATAAATTCAAGAACAAATTGCTACCGATTGAAGGCCAGTGTCATG
CTTCATTTGCAGGCCGACTTAACCCGTGGACGAACTCTAATCAACGGCTA
GAATTTATCGGAGACGCTATTTTGGAACTTATGGTGACGTCAGAATTGAT
TCGAAGGAATGAAAAAGATTCACTCTCGTTTGACCAAGGATCCCTATCTA
ACATCAGAAGTGCAATTGTTTGTACGCGTACTCTTGCTGTCGTGGCCGCA
CGTCTTCAACTTCATGGAGGTTTGAAGATATTGGATTTACCGACTAAGAT
ATTGATCGATGATTTTGTGGAAGCTCTCGAAGGACTGGGAACTAAATTTG
ATGAGGACTTTTACGAAGCCAACGTAATAAAAGCACCGTCAGACGATAGA
TTTGCTGGTGCGATTCTCGAGATACCAAAAGATCTTGCGGATTGTACGGA
GGCTGTTATCGGTGCCGTGTATTTGGACACCGGTGGTAACCTTCAGGAGA
CTTGGTCTATCTTTGAGCCACATTTCGCTGATGTTATTGatttttacgtG
ACCCGATCACCTCCCTCAATCTATATTTATGTCAGTCACAAATTTTTATG
ATTTCGATAGCGCTCAAGTCCATTAGTAAAATGAAAAGATGGTGCAggtg
gctctgggtacgagattagAGACCCCGtt
Run BLAST on NCBI

transcript from alignment at scaffold_410:38446..48202+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064298 ID=TCONS_00064298|Name=TCONS_00064298|organism=Clytia hemisphaerica|type=transcript|length=9757bp|location=Sequence derived from alignment at scaffold_410:38446..48202+ (Clytia hemisphaerica)
ATGTATTTCACTGATATCTGAACTTGAAACATATTTCCAGGATAACAATA
GCATCGTTCTCCAACATATGGCAAACGGCAATCAATCTAAACAAGAAATA
TTGGAACCGCAAAGGATTCTGGTTATTCTCATGTCACTGGATACGTTTTT
GCAAATCAAACCTCATTCTATTGAATGTGTTTTGTTTAACGCACGTGTGA
ATGATTTGAGGATGTATGAAACGGTCAAAAGTATCTTACTGAGAATGAAT
CCTTTAAAAGTTGTACACGTCAAATGTCATGAGAATGAGGTTAGTCAAAG
CACATGCGTAAATAGTGAGTACACgctctttttttaagaaatgtgTGTTT
TTCAATTTAATCATATATATCTTAACAACACACTtattaactttttgggg
aaatcgTATTATAGAGCCTTTTTAGGGAACCTGAAAATGTTGAATTGTTG
TTGAGAAAATCCAATAAAGTAACACATAATAATATAGACGATTTTTTTCC
GGGGatttgagctggaaatgatCATTTCTTTGTAAGAACTTTATAAGATT
CTAACATTACTCCCAACGAATTCGACCATTAGATTTTCAAGGGAAAGGAC
ACTTGAGAAATTTGAGTTTGATACAGTTTATATATCTTTATCGATTATta
tcaaatattttctaaacACTATAAATATAAACATATACTAAAGATTACCT
TTATCGGGCTTTTAATTAgacggggaaaaatttcgtcacctagaggcatt
tttgtcacttttccccgacctgAATtccaaatttgtcaaatttcgacttt
ttcttcccgataaggtatctactttacttttctttttcaaaggtttATTC
GCAACATTTATGGAACgttttatcaaaagaatatCTGGCTCCACCTTTCT
CGATGGATCATCGATCCTTGTACAGGTCAGTAAGTTTGTTCAATCGATCT
GTGATCCAAGTTTTTACAACAATAATGCTGAAATTCCAAGAAATGGTTGA
CTGGAATGACAACTTCACCTCTCCCAATGAACCATGTGTNTTTCCACAag
acaaaaaatctcaaaattttacgGATTTATTTCCCAGAATATGGAATTTA
GCGTTGGTTTAATAGTTTAATTTCGCAAATAAgccgaaaatgaaaaattt
cctgATTCAGTGATTTCACCTGATTTCGCAAGATTTGttttcgcgaaaaa
aaagaagaattctcTACAgtgtaaaatttagttttgcgaaaatttatccG
ATTAAAGAAAATATTCGTTTGTGCTCTGAAGGACCTTTTCGGGCTTTCTT
CTTTATATTGTCAACATTTTTCGTAGAATAATTTCTTTTGAGATCGTCCC
TCGTGACAACAAGTAATATCGAAAAATGGTTGGACTCCATCTgacacaaa
acgttgtttcgaTGGTCACCTAACGATATTGaagttgtgaacattagata
aacgttgataCAACGTTGTGTGGAAACGTTGATACAACGTTGTGTGGAAA
CGTTGATACAACGTTGTGTGGAAACGTTGATACAACGTTGTGTGGAAACG
TTGATACAACGTTGTGTGGAAACGTTGATACAACGTTGTGTGGAAACGTT
GATACAACGTTGTGTGGCAGTTCGGACTTATTTTAAAGCAATGTTTCATC
TTATTGGTCGGTAGAAATGTccgatattttcaatttttgaataatttctt
AGCAACTTTAGCTAAATGGCTCCGGTTTAAGATTATACATTCTATCCATA
TTATAAGTCACTACAAATTAAAGACGATTCTAAAGAAGTTATTTCCCAAA
TGATGCATTATTTTATAGACAAAGAGCCACCTGCACCGACCAAGAGACGC
GACGTGAACATAATTGAACTGATCTTTCCTTCCGATCTTCTTCCGTCCAA
CATTTGTATTGAAAGTGGTGAAAATAGTGAagacaaaatttctgaaaata
tcaaAGGGCGTTCGATTGAAGCCATCGTTAAAACGGGCCAATCAAGTGAA
AGCATGActgaaattaaccaatcagatGGTAGACTTGAAACTTTAAACCA
ATCAAAAGCTAGTGGTTTGaatttgaaccaatcagagGATAGCAAGGCCA
AAACTAGCCAATCAAGCATATCTGATGTTACAACAACTGACAAATCAGAT
GAAACTGTCCTAAAGCTTGATCACTTCAAGATAATCTCttcaaaccaatc
aaatcaaacTCTTTCAAAgcccaaccaatcagaaaggaCCGAGATCTTaa
acagccaatcagaagaaACCAAGCTTTTaaacagccaatcagaagagacc
AAGCTTTTaaacagccaatcagaagagaccAAGCTTTTtaacagccaatc
agaagagaccAAGCTTTTaaacagccaatcagaagagaccGAGATCTTaa
acagccaatcagaagagaccAAGCTTTTaaacagccaatcagaagagacc
GAGATCTTAAACATCCCATCAGAAGCAGAGATGATTACAAATGTGCACCA
ATCAGAAGAAATTCTCCTCAATTTCAGCCTATCGAATGGAAAAGAAAGTG
CTGAAAATCAAATACAACCAGGATCTGAAAATGCAACCCATGAAGAAATA
AAGGTCGCGCCTACCCAGGTTACTCCTGAGTATCTGACAGCGCAATGCAT
TATTGTTTGCCAATCACATCCAGAATGCATTTCACTGATATCTGAACTTG
AAACATATTTCCAGGATAACAATAGCATCGTTCTCCAACATATGGCAAAC
GGCAATCAATCTAAACAAGAAATATTGGAACCGCAAAGGATTCTGGTTAT
TCTCATGTCACTGGATACGTTTTTGCAAATCAAACCTCATTCTATTGAAT
GTGTTTTGTTTAACGCACGTGTGAATGATTTGAGGATGTATGAAACGGTC
AAAAGTATCTTACTGAGAATGAATCCTTTAAAAGTTGTACACGTCAAATG
TCATGAGAATGAGGTTAGTCAAAGCACATGCGTAAATAGTGAGTACACGC
TCTTTTTTTAAGAAATGTGTGTTTTTCAATTTAATCATATATATCTTAAC
TTATTAACTTTTTGGGGAAATCGTATTATAGAGCCTTTTTAGGGAACCTG
AAAATGTTGAATTGTTGTTGAGAAAATCCAATAAAGTAACACATAATAAT
ATAGACGATTTTTTTCCGGGGATTTGAGCTGGAAATGATCATTTCTTTGT
AAGAACTTTATAAGATTCTAACATTACTCCCAACGAATTCGACCATTAGA
TTTTCAAGGGAAAGGACACTTGAGAAATTTGAGTTTGATACAGTTTATAT
ATCTTTATCGATTATTATCAAATATTTTCTAAACACTATAAATATAAACA
TATACTAAAGATTACCTTTATCGGGCTTTTAATTAGACGGGGAAAAATTT
CGTCACCTAGAGGCATTTTTGTCACTTTTCCCCGACCTGAATTCCAAATT
TGTCAAATTTCGACTTTTTCTTCCCGATAAGGTATCTACTTTACTTTTCT
TTTTCAAAGGTTTATTCGCAACATTTATGGAACGTTTTATCAAAAGAATA
TCTGGCTCCACCTTTCTCGATGGATCATCGATCCTTGTACAGGTCAGTAA
GTTTGTTCAATCGATCTGTGATCCAAGGTTTTACAACAATAATGCTGAAA
TTCCAAGAAATGGTTGACTGGAATGACAATTTCACCTTTCCCAATGAACC
CTGTGGTAGCTTGCCAAATACTGGTGAAAAAAAAATTGGGCCCTTCCCTC
GAAAATAAACGCCCCTCAATTTAGGGAAAATTTTCGAATAAACGCCTCCT
CTGTCTCATGGTTCTTGTCGTGAAGTGTTATTTTCTGGGAAAGATGTGTC
GTGCTGCTCTGAAAACCTTTGACAATAAGGTCCTGTAAATATTTTCTTAT
TGTTGACTTCTTCTTTTGTTTTTCTCTTTAGACTTTGTGGAATGTATTCC
TCGTCCATGTACAGTAAGGTAGACGTCGAAGTTGAACGTAAACCTGATAT
CGAAAGTGAAAGTGGTTCCCAGACTCTTATCTATATGCCGATGAGATCAA
CAATCAAAGCCATTGCCAAGGTTTGTGCACTATTTTAtgataagaacgtc
aaaaaattttgaacccttcggatgttcttaactttttcggtTTTAAAACT
TATTcttagaaatgttcttaaagtgtTAAAAATCCATTATTTTCTTGCTA
CAagtcaaaaacttgtaacttgaaTATTGTCAACTTTatttacataatag
attttcatGCCAAAGATGCCAAACCATCTTATTAAGTCCCTTAAAGGTTC
TTGGTTGCAGTGTtgcgctttttttataagaacaaactatataagaacat
aaggcttcgatggccaaaatgataagaacaagttgagaacattttcagac
tctaaaacaaccaaatttttaaaaagttgaagagaaatactcacaaaatg
gtgaaaatatgaacatttttatGCTTAATACTCAAAAACCTGTATcattt
tcaaacctttttcCGCGTGaggttatttatttatttttttcagatgagat
ggagtttttataagattggtcgtttgaagtaataaaaatgacgcgttctt
tagaaaaagtaacaaaattgttttattactgattaacgaccaaccaaatc
aaataagagctagTAAAAACTCCATCCCGTCCCTTTTTTCGTCTCAGAGT
GATCCATCGGTGTCGAAAACTGATGAATCAGCATTACGTCATGCAATCAA
GTTGCTGAAAGAGAATCGTGAATTGGACAACAAGGGAGATGTCTTGAAAA
GAATTGAAGCACCTTCGAATTGTCaagaaatgaaagaatttttcgTACCT
CGAATCATGGATGAGAAGGTATATTTGTTTTCCCCCGCGAAATTTCTGAT
TTCGCCAgtatgggcttttccagaaaaaaaattgaatatggggggtggag
gatataacatttcttTAGAAATTTACNTTTTCCCCCGCGAAATTTCTGAT
TTCGCCAgtatgggcttttccagaaaaaaaattgaatatggggggtggag
gatataacatttcttTAGAAATTTACTCCTCGGATATTGTGACTTTTGAT
CCTTCAAACAGCAGGTATAACTcccggacaagcattagttgaccccctgg
acactcgAACTGAGCAAGTTTActccccggacaaggcaaaatttgtagat
ttttttacTCCCTCCGAACACTATATCCTACacccccccccatgtacgaa
tattgtctggaagagcccaatattaGGTAGTAGGAGCTTAAAGGTTGGgc
taaaatggcaaaaataaccaaaaaaGCCCTACTTCACTTTTTGAAGAACC
ACCCCACACTTTATCAAGTCTGTAGAAAAATTCCTAGAATAATGAAATGT
AGAACCTAATTTGTGAGACAATGCTGTCGTTCTGAGCACGAAATCATTTG
AAAATACTATCATACTATTAAACATTTTTCTATCTTAGGAGGAATTAACA
GAACCAATCAAATCTCTTTGCCATGGGCAGCCATTGTACGTGTATCGGAT
GAGGTTCGCGGAGATGACTTCTAGAGAAGGTGACGTGTCGACCAGTTTTA
AAGGAATCAACACCGTTGGATTAATATCAACTATCAAAATACCTAAGGTT
TGGATTTTTCTCAAATTTTTTATATCAAATACATCTACTGTGAGCACTCG
CAAAGAAATTCTTATGCTCATAAGTACAAAGGTGTGGTGAGAAATTTCCC
AAGGAAAAAATAGtgcctttttttgttttcagagCGAGCCCTCggcaaac
tttttcaaaattgaccaatctttttaaacttttaacatCTAATCTGGAAT
AATTTTTGTCGCTTATTAGcaaattttgttgttgtttcatCTCAATTCCA
AACAAGACTTTACTTCTGCTCGCAGCCGTTTGTTGAGATAATTTGACTTT
GAACAAATgaactgaaaaaaatgatatatttatatttttattccgATGAT
AAatgtttttatcgatttttcctcttcttttgttttcactTCATAGTTTG
AAGAAACGTTTTACGATCATTACGGCTCAGTCAATGTTGTTTTGACGGAT
GACTTTCAGACCATACTCACCGAAGACGATTTCCAGATAGTTCAAAACTT
CAAAagagatattttcaaaaatatctacAATCTATTGCCTAATGATGATT
CCCTCGTGTCTACAAAATATGCAATTGTAATGCTGCACCCAAATGAAGAT
TCCCTGgattttgaaattatgcatCAAACAACAGCTTACTTTGACTCTCT
NCTACAAAATATGCAATTGTAATGCTGCACCCAAATGAAGATTCCCTGga
ttttgaaattatgcatCAAACAACAGCTTACTTTGACTCTCTCATCAAAG
ACGTTGACACTCGAAAAATATTCACGAACACTTTACCGGTAGCCGAAACT
ATCATTTTAGCGGTCCATACTTTACCAAAGATCAGTGCACCAATGTTAGT
GCAAAAACTTCCTCAAAACACCGCACATAAATCTGTATTAGACGAATTTC
CTGATCAAGAAAAAGCTCCAACTTTCCTTGCTTACTTCAATTCGAAATAT
GATGTCAATATCTTAGAGAGTGAATCCATGGTTCCTGTCAAACATTTAAA
AACGGTTTTAAACTCGATAAACACGATCGATTATGCAAAACGACGCAAAA
GTAAAAGCAAACCGAACGAATTGCCCCAGTCTCTTTGTTACTTGTACCCA
TTCTCCTTTCCAATATGGCGGATTATCTGCGTGTTTCCATCTTTAGTGTA
TTATCTGAAGCAGTACGAAAATGCGAAATCAGTGTTGAGCATTTTGAATG
AATTCAAACTGATCCAAGAAAAATACGAAGAAAATTTGTCACGTTGTAGT
CCCTTGGATCTTTGTGCGAAAGATAGCGGAGTTGTTTCGGACATTCACCN
CTGATCCAAGAAAAATACGAAGAAAATTTGTCACGTTGTAGTCCCTTGGA
TCTTTGTGCGAAAGATAGCGGAGTTGTTTCGGACATTCACCAAGAACACT
TAATTGTTTCAAAAGGGCAGTCCCTCGTTAAGGAGGAGAATCGTCAAAAT
GATTCGTCAATATCTGAAGAAGCAGTGTTTGCAATTACCAATAAAAGCGA
TcttgaaaatcgggaaaacattcaaaaaatcgGAAGCTTGACCAATGGAG
CTCCATCGGCCCTTCATCTTGCAGAGCAGAACCAGATGAACCTACTTCTG
TCCGATAATCAAACGTTGGAGGATTCATGTCTGGCAATTGAAGAACTTAA
ATCGATATCCGAAGATACCAATAAATCTGCGAAATATCCATCCAAAAAAC
ATCCGATCCCTGATAATCAATCTCATGATATATGCAATGGTAAAACAACT
TTGGGAAATGTAGCTATGACAGAAATTCCTGGAATTGATGACTTATCGAG
CTGGTCTAACTTTGACGAAAACGGGTGTCATCAAACTCCTATCCAAGACA
TTGTAGATTCATCTGAGAATCCAGATCTTGTAAATCGAGTTCGAAAAGCT
CTCATCTCTAACTCAGCAACCGAAAACATTTCGAATGAGATTTTCGAATA
TTTTGGTGATTCAGTTCTCAAATATGTTATAACAATCAATTTGTTTTTGA
CACGCCCAGATTTCAATGAGAATTCGTTAAACTTCTTTAAATCACAACTT
GTAAGTAACGAACTGCTTTACAGAATTGGGTTATCGAGGCAATTACGAAG
ATTTCTCTTCTATGACAGGTTTGAGCCATCGGACTTAAAATCCTACATGT
TCAATGATGTTACCTCCGTCTCGCAGACTGAAACGAGTGAATCCTCCGCA
TCACAGATTGGATCGATTGATGAGGAACTCACCACTACCAATTCTTCGCA
TTTTGAATCTAAGCTATTTCCCATTAACCAAAGCAACAATACCGCTACAT
CCGTTTCACAGATTGAATCTAATGACTCTGGTAATCATAGCAATAAAGCA
ATATCAGATATGACAGAAGCTCTCATTGGTGCGCTGTTCACACAAAATCA
TGATGTCAACCCGCTATGGCTCAATTTTCTCGAATGGCTAGGTTACAAAC
TGACTAATTTTCGCCGTCTTTTATCAACTGGTCATTATCAATCCAGCCCA
TGTGACGTTCCTAGTGGAAATAGCACCTTATCTTATTCACAGCAATATTC
TTCCTTCGTCCATCCAGATATTTTAGGACATGTAAACAAAGCTTTAACCC
AGCCACCACCACCGTCATACCTTACGACCGGTTTACATCAACTGGAAGAA
TCTCTTGGTTATAAATTCAAGAACAAATTGCTACCGATTGAAGGCCAGTG
TCATGCTTCATTTGCAGGCCGACTTAACCCGTGGACGAACTCTAATCAAC
GGCTAGAATTTATCGGAGACGCTATTTTGGAACTTATGGTGACGTCAGAA
TTGATTCGAAGGAATGAAAAAGATTCACTCTCGTTTGACCAAGGATCCCT
ATCTAACATCAGAAGTGCAATTGTTTGTACGCGTACTCTTGCTGTCGTGG
CCGCACGTCTTCAACTTCATGGAGGTTTGAAGATATTGGATTTACCGACT
AAGATATTGATCGATGATTTTGTGGAAGCTCTCGAAGGACTGGGAACTAA
ATTTGATGAGGTgagtttttttctataaatggTAGACTTCCCTTATTCAA
AGGGCAAAGGGGAATAGAATTGTTCAAGTTAAGAGGGTTTCGAAGACAAT
GAATaataacttcttttttttctaataCTGATTAATGGTCACACATTCAT
TCAGATATATTGCTTGTTTCTACCCCTTTTTTGTTCTTAGGGTTCGGGGT
CGACTTAGTTTAGCCAAAAGTTTTGTTTCGAGTCGCATTTCTTAActtaa
aatttcacatttttattTCAGGACTTTTACGAAGCCAACGTAATAAAAGC
ACCGTCAGACGATAGATTTGCTGGTGCGATTCTCGAGATACCAAAAGATC
TTGCGGATTGTACGGAGGCTGTTATCGGTGCCGTGTATTTGGACACCGGT
GGTAACCTTCAGGAGACTTGGTCTATCTTTGAGCCACATTTCGCTGATGT
TATTGGTAAGAGATTTACAAATTTACCTCAGAGGCGGAGATAATGATTGA
CGATGTCTTGATTTTGGTCTTTTCTTGATATGTGAAGATGACGTCATACT
TTCTAACAGAAAAGCCcggaaaaagtatttctatttctaGTAACAGAAAG
GGGCTAATCCCGGCCTTTTTCGGGTGTTTGGGCTAGAAAattgacttatg
catatcaatTATACGTATTTGGGATCTTGCCTTCTGCTAGTCTTTCTTGA
TTGTGAACTACCTATATATAACACAATTTTAAATTGTAGACTATTTTTTT
TCTGTGTCTCTATAGTGCTAAAGAACTTCGTTTTCCTACAGAGGTATTTT
GAATAGGTATACGTACCTAATTTCAACTGTATATAAAAGAGTTTTAGTAT
AGTATTTCCCCCATAGAATCCTTGTGTCGTAGTTATGGGCTTTAGAGAAA
GCGCGTTGGGATTTGAACCTGTCCTGTTTTTTAGATTGTTTCTCATGTCT
CCCTgcttttattttagatttttacgtGACCCGATCACCTCCCTCAATCT
ATATTTATGTCAGTCACAAATTTTTATGATTTCGATAGCGCTCAAGTCCA
TTAGTAAAATGAAAAGATGGTGCAggtggctctgggtacgagattagAGA
CCCCGtt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040315XLOC_040315Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064298-exon-scaffold_410-1491911889:38446..38734TCONS_00064298-exon-scaffold_410-1491911889:38446..38734Clytia hemisphaericaexon
TCONS_00064298-exon-scaffold_410-1510915933:38446..38734TCONS_00064298-exon-scaffold_410-1510915933:38446..38734Clytia hemisphaericaexon
TCONS_00064298-exon-scaffold_410-1575043694:38446..38734TCONS_00064298-exon-scaffold_410-1575043694:38446..38734Clytia hemisphaericaexon
TCONS_00064298-exon-scaffold_410-1491911889:39288..39370TCONS_00064298-exon-scaffold_410-1491911889:39288..39370Clytia hemisphaericaexon
TCONS_00064298-exon-scaffold_410-1510915933:39288..39370TCONS_00064298-exon-scaffold_410-1510915933:39288..39370Clytia hemisphaericaexon
TCONS_00064298-exon-scaffold_410-1575043694:39288..39370TCONS_00064298-exon-scaffold_410-1575043694:39288..39370Clytia hemisphaericaexon
TCONS_00064298-exon-scaffold_410-1491911889:42377..42515TCONS_00064298-exon-scaffold_410-1491911889:42377..42515Clytia hemisphaericaexon
TCONS_00064298-exon-scaffold_410-1510915933:42377..42515TCONS_00064298-exon-scaffold_410-1510915933:42377..42515Clytia hemisphaericaexon
TCONS_00064298-exon-scaffold_410-1575043694:42377..42515TCONS_00064298-exon-scaffold_410-1575043694:42377..42515Clytia hemisphaericaexon
TCONS_00064298-exon-scaffold_410-1491911889:43143..43313TCONS_00064298-exon-scaffold_410-1491911889:43143..43313Clytia hemisphaericaexon
TCONS_00064298-exon-scaffold_410-1510915933:43143..43313TCONS_00064298-exon-scaffold_410-1510915933:43143..43313Clytia hemisphaericaexon
TCONS_00064298-exon-scaffold_410-1575043694:43143..43313TCONS_00064298-exon-scaffold_410-1575043694:43143..43313Clytia hemisphaericaexon
TCONS_00064298-exon-scaffold_410-1491911889:43934..44092TCONS_00064298-exon-scaffold_410-1491911889:43934..44092Clytia hemisphaericaexon
TCONS_00064298-exon-scaffold_410-1510915933:43934..44092TCONS_00064298-exon-scaffold_410-1510915933:43934..44092Clytia hemisphaericaexon
TCONS_00064298-exon-scaffold_410-1575043694:43934..44092TCONS_00064298-exon-scaffold_410-1575043694:43934..44092Clytia hemisphaericaexon
TCONS_00064298-exon-scaffold_410-1491911889:44492..47105TCONS_00064298-exon-scaffold_410-1491911889:44492..47105Clytia hemisphaericaexon
TCONS_00064298-exon-scaffold_410-1510915933:44492..47105TCONS_00064298-exon-scaffold_410-1510915933:44492..47105Clytia hemisphaericaexon
TCONS_00064298-exon-scaffold_410-1575043694:44492..47105TCONS_00064298-exon-scaffold_410-1575043694:44492..47105Clytia hemisphaericaexon
TCONS_00064298-exon-scaffold_410-1491911889:47367..47550TCONS_00064298-exon-scaffold_410-1491911889:47367..47550Clytia hemisphaericaexon
TCONS_00064298-exon-scaffold_410-1510915933:47367..47550TCONS_00064298-exon-scaffold_410-1510915933:47367..47550Clytia hemisphaericaexon
TCONS_00064298-exon-scaffold_410-1575043694:47367..47550TCONS_00064298-exon-scaffold_410-1575043694:47367..47550Clytia hemisphaericaexon
TCONS_00064298-exon-scaffold_410-1491911889:48063..48202TCONS_00064298-exon-scaffold_410-1491911889:48063..48202Clytia hemisphaericaexon
TCONS_00064298-exon-scaffold_410-1510915933:48063..48202TCONS_00064298-exon-scaffold_410-1510915933:48063..48202Clytia hemisphaericaexon
TCONS_00064298-exon-scaffold_410-1575043694:48063..48202TCONS_00064298-exon-scaffold_410-1575043694:48063..48202Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_410supercontigscaffold_410:38446..48202 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.97273e-09	0	0.087501	0.0666696	0.0352196	0.441977	0.131882	0.259442	0.122817	0.105163	0	0	0	0.291712	0	0.370479	0	0	0.616017	0.394782	0	0.034954	0.509286	0	0	0	0.20112	0	0.0958402	1.32264e-07
Blast
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BLAST of TCONS_00064298 vs. Swiss-Prot (Human)
Match: DICER (Endoribonuclease Dicer OS=Homo sapiens GN=DICER1 PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 6.214e-19
Identity = 67/230 (29.13%), Postives = 115/230 (50.00%), Query Frame = 3 
Query: 3000 FVHPDILGHVNKALTQPPPPSYLTTGLHQLEESLGYKFKNKLLPIEGQCHASFAGRLNPWTNSNQRLEFIGDAILELMVTSELIRRNEKDSLSFDQGSLSNIRSAIVCTRTLAVVAARLQLHGGLKILDLPTKILIDDFVE------ALEGLGTKFDEDFYEANVIKAPSDDRFAGAILEIPKDLADCTEAVIGAVYLDTGGNLQETWSIFEPHFADVIDFY---VTRSP 3662
            F HPD     +K L      ++L +G    E+ + Y+FKNK   ++   HAS+    N  T+  QRLEF+GDAIL+ ++T  L     +D      G L+++RSA+V     A +A +   H   K +      +IDDFV+       ++G+ ++          ++   +D      +E+PK + D  E++ GA+Y+D+G +L+  W ++ P    +I+ +   V RSP
Sbjct: 1650 FDHPD----ADKTL------NHLISGFENFEKKINYRFKNKAYLLQAFTHASY--HYNTITDCYQRLEFLGDAILDYLITKHLY----EDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSE----------LRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSP 1853
The following BLAST results are available for this feature:
BLAST of TCONS_00064298 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DICER6.214e-1929.13Endoribonuclease Dicer OS=Homo sapiens GN=DICER1 P... [more]
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