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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064287 ID=TCONS_00064287|Name=TCONS_00064287|organism=Clytia hemisphaerica|type=transcript|length=2492bp
ATATGCGACATTTTTAAACCCTCAAAGGTATCTCTAAGGGTTATAAAAAA
CCAATTCACTATCTGAAAGTgtccaaaattcacgaaaatcgaaaGTCTCC
GGGGTCGTGCTCCTAAGAAAAAAGCTTCTATTGTgttgataacttttgat
ttaggAGGTTTCTATAATTTTGAAAAGCATTTATAATAGAGCCAATGTAG
AGAGAGAACCAgcgactacacgctttttttttataagaatggtgtttttt
tcatttcatcatggcccatcatggatattcttaacttttttaggaaaatc
atccttaaatattcttagggtatttttTTAGGTTATGGTCGAAATTCAAC
CAAACTTTAACAAGAACACCTGTagcaaaaattgcatttttgtgaaaatt
ttgagCCTTACTGGGCGGAAACtggcaatttacagttaaaatttCTCTGT
AAATAGCATTCTTGGATTTTGTTGcctaattccatgatggtgatattctt
acgatattctcgatttttttggccgttttcatcatgaacattcttataaa
gtgtattcttataaaaaaaagcgtgtattatctTAGTTGCATAATTATAT
AGAACTTAATACCTTAATTATACTACTATTTAACAGAGAAAGGTTTATCG
TAAGTAATCAAATTGCATATCATTGTACAACGATAAGCCACGGATATGAA
AGTACTCAAAGCCGGAGAGTGTTAGATTTAAGAATTATTCTTTATATGGA
AACCAGTGATCTCCTTCTTATTGTGAAATTCCATATTATTAACTCCTACT
TTAAAACGAGAATCTCGAGAaaggaagttttttttcaaaaagcttcCGAG
TTCGTAGGAGGATGTCTAATTAAGAGGAGCATTTTGTTGTCATCAATCAA
AGCAattactaattaaagtaaagaTACATTTGAAAGTATCGACTCGAACA
TTAAGaggaagatttttcaagaagaATATAATAACACTGATATTTTCAAA
CATTCTCATCTAAAGTATGACAATCCAAGAATACTgatatttgaattttc
tttttaagtACGTACGTACGTGCTGTTGAAACTTtgttattttagatttt
gtaaaaaatggcTGAAGTGCAGGATTGGAAAGTTGAAATTGAGACTGTTC
ATACAAAGGTGGAACACGTCACGAATATCGATGAAAATCGGAATCAAAGT
AATGCAGTGGACACTCGTAAAACGCAACAATATCATTTAGACACTCTATT
TGAAAAGGTGAAAATTATTAGCGATGAAGAAAATGATACTAtcaaaaaag
agattttacacGAAAAGGTTGAAGCTGTTGATAAAAAACTATCAGAAACA
CATGCTCTAGAAAACACCGAGACTGATAACAACGAGAATGGTAATATAAT
CGAAACAAAGGGCCTAAGTGTGAGCCCTATCTACTTGGAAACAAAGGACA
ATGATACTGAGATCGGCAAACTTCCCAGAAGCAGCCCTGTACTCACTCGG
AAACGTAATAAAGCAATCAACAAGGGAAGTCCTGAATCCAACAGGAACAG
TTTCATATCCATCAGCTCTGAAAGCTCCTCCGACAGTCCTAATATCAATA
CAGATAACAGGAAAAGTATTTCTAGTGACAATGACAATAGCGCAaacaaa
gtttttaattttgactCTGTTAATGACCAATACAGtcgaaaaatgaaaca
aattcgGAAAGAAAAAGCGAAAAGTCTTGATTTTGGTCCCAAGAACCCAA
TAATTAATAGTGACAAGAGAGAAAAATCACAAAGTTTTGATATTGGAAGT
CCAAAGGCCCCAAGAAGCAATAGTGAAGGCAGTCCAAGAATTTCAAAGGA
TAAAAGACTCTTTGGTGGTATAAATAGTCCAAAACTGTTTAGAAAATTGA
GAGGGAGTGGAGatcaaagtccaaaaacatcACGAAGTCCTAAGATACCG
AAAagcccaaaaatcaaaaaagacaatAAGAATAAGAGCGACAATAGCCC
TAAAAACAAAAAGGCAATTGGTGATAGAAGCTCAAGTAACGATAGTGACG
ATTTTAACAACGAAAAGGATGATATTGTCGGCGATTTAAGAACTTCAAAG
CAATTTGATCGACAAATAAACACACACCAAAGACTTTCAAGAAAAACTTC
GTATGTTGTTGAAGAAATTGTTAATTATTGTGTTCCGTTGGTCAAAGTTG
AATTTGTTGGACAGTCAAGTACTGTTAAAGTATGTATACATCTAATGTTT
AAAAACCTATTATCTTTTTATTACTTTTGGTCTGTACCCGTAGCAAAAAG
GTAGTTCGTCTTGTAACCACATTCGAGGGTAACACGGCTCCCTTTTTACC
GGAAAAAAGGGGAGAACGCCATTCCCTTGATTTCATCACTTACTTTTGAT
CCACGTTTTTAGTTGTTGACCAGAGAGGCATCGAGTATCTTTTTTAGACT
CGtaggtacacttttttttataagaacaaactatataagaac Run BLAST on NCBI protein sequence of TCONS_00064287-protein >TCONS_00064287-protein ID=TCONS_00064287-protein|Name=TCONS_00064287-protein|organism=Clytia hemisphaerica|type=polypeptide|length=398bp
MAEVQDWKVEIETVHTKVEHVTNIDENRNQSNAVDTRKTQQYHLDTLFEK
VKIISDEENDTIKKEILHEKVEAVDKKLSETHALENTETDNNENGNIIET
KGLSVSPIYLETKDNDTEIGKLPRSSPVLTRKRNKAINKGSPESNRNSFI
SISSESSSDSPNINTDNRKSISSDNDNSANKVFNFDSVNDQYSRKMKQIR
KEKAKSLDFGPKNPIINSDKREKSQSFDIGSPKAPRSNSEGSPRISKDKR
LFGGINSPKLFRKLRGSGDQSPKTSRSPKIPKSPKIKKDNKNKSDNSPKN
KKAIGDRSSSNDSDDFNNEKDDIVGDLRTSKQFDRQINTHQRLSRKTSYV
VEEIVNYCVPLVKVEFVGQSSTVKVCIHLMFKNLLSFYYFWSVPVAKR Run BLAST on NCBI transcript from alignment at scaffold_41:809030..811521 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064287 ID=TCONS_00064287|Name=TCONS_00064287|organism=Clytia hemisphaerica|type=transcript|length=2492bp|location=Sequence derived from alignment at scaffold_41:809030..811521 (Clytia hemisphaerica)
gttcttatatagtttgttcttataaaaaaaagtgtacctaCGAGTCTAAA
AAAGATACTCGATGCCTCTCTGGTCAACAACTAAAAACGTGGATCAAAAG
TAAGTGATGAAATCAAGGGAATGGCGTTCTCCCCTTTTTTCCGGTAAAAA
GGGAGCCGTGTTACCCTCGAATGTGGTTACAAGACGAACTACCTTTTTGC
TACGGGTACAGACCAAAAGTAATAAAAAGATAATAGGTTTTTAAACATTA
GATGTATACATACTTTAACAGTACTTGACTGTCCAACAAATTCAACTTTG
ACCAACGGAACACAATAATTAACAATTTCTTCAACAACATACGAAGTTTT
TCTTGAAAGTCTTTGGTGTGTGTTTATTTGTCGATCAAATTGCTTTGAAG
TTCTTAAATCGCCGACAATATCATCCTTTTCGTTGTTAAAATCGTCACTA
TCGTTACTTGAGCTTCTATCACCAATTGCCTTTTTGTTTTTAGGGCTATT
GTCGCTCTTATTCTTattgtcttttttgatttttgggctTTTCGGTATCT
TAGGACTTCGTgatgtttttggactttgatCTCCACTCCCTCTCAATTTT
CTAAACAGTTTTGGACTATTTATACCACCAAAGAGTCTTTTATCCTTTGA
AATTCTTGGACTGCCTTCACTATTGCTTCTTGGGGCCTTTGGACTTCCAA
TATCAAAACTTTGTGATTTTTCTCTCTTGTCACTATTAATTATTGGGTTC
TTGGGACCAAAATCAAGACTTTTCGCTTTTTCTTTCcgaatttgtttcat
ttttcgaCTGTATTGGTCATTAACAGagtcaaaattaaaaactttgttTG
CGCTATTGTCATTGTCACTAGAAATACTTTTCCTGTTATCTGTATTGATA
TTAGGACTGTCGGAGGAGCTTTCAGAGCTGATGGATATGAAACTGTTCCT
GTTGGATTCAGGACTTCCCTTGTTGATTGCTTTATTACGTTTCCGAGTGA
GTACAGGGCTGCTTCTGGGAAGTTTGCCGATCTCAGTATCATTGTCCTTT
GTTTCCAAGTAGATAGGGCTCACACTTAGGCCCTTTGTTTCGATTATATT
ACCATTCTCGTTGTTATCAGTCTCGGTGTTTTCTAGAGCATGTGTTTCTG
ATAGTTTTTTATCAACAGCTTCAACCTTTTCgtgtaaaatctcttttttg
aTAGTATCATTTTCTTCATCGCTAATAATTTTCACCTTTTCAAATAGAGT
GTCTAAATGATATTGTTGCGTTTTACGAGTGTCCACTGCATTACTTTGAT
TCCGATTTTCATCGATATTCGTGACGTGTTCCACCTTTGTATGAACAGTC
TCAATTTCAACTTTCCAATCCTGCACTTCAgccattttttacaaaatcta
aaataacaAAGTTTCAACAGCACGTACGTACGTacttaaaaagaaaattc
aaatatcAGTATTCTTGGATTGTCATACTTTAGATGAGAATGTTTGAAAA
TATCAGTGTTATTATATtcttcttgaaaaatcttcctCTTAATGTTCGAG
TCGATACTTTCAAATGTAtctttactttaattagtaatTGCTTTGATTGA
TGACAACAAAATGCTCCTCTTAATTAGACATCCTCCTACGAACTCGgaag
ctttttgaaaaaaaacttccttTCTCGAGATTCTCGTTTTAAAGTAGGAG
TTAATAATATGGAATTTCACAATAAGAAGGAGATCACTGGTTTCCATATA
AAGAATAATTCTTAAATCTAACACTCTCCGGCTTTGAGTACTTTCATATC
CGTGGCTTATCGTTGTACAATGATATGCAATTTGATTACTTACGATAAAC
CTTTCTCTGTTAAATAGTAGTATAATTAAGGTATTAAGTTCTATATAATT
ATGCAACTAagataatacacgcttttttttataagaatacactttataag
aatgttcatgatgaaaacggccaaaaaaatcgagaatatcgtaagaatat
caccatcatggaattaggCAACAAAATCCAAGAATGCTATTTACAGAGaa
attttaactgtaaattgccaGTTTCCGCCCAGTAAGGctcaaaattttca
caaaaatgcaatttttgctACAGGTGTTCTTGTTAAAGTTTGGTTGAATT
TCGACCATAACCTAAaaaaataccctaagaatatttaaggatgattttcc
taaaaaagttaagaatatccatgatgggccatgatgaaatgaaaaaaaca
ccattcttataaaaaaaaagcgtgtagtcgcTGGTTCTCTCTCTACATTG
GCTCTATTATAAATGCTTTTCAAAATTATAGAAACCTcctaaatcaaaag
ttatcaacACAATAGAAGCTTTTTTCTTAGGAGCACGACCCCGGAGACtt
tcgattttcgtgaattttggacACTTTCAGATAGTGAATTGGTTTTTTAT
AACCCTTAGAGATACCTTTGAGGGTTTAAAAATGTCGCATAT Coding sequence (CDS) from alignment at scaffold_41:809030..811521 >TCONS_00064287 ID=TCONS_00064287|Name=TCONS_00064287|organism=Clytia hemisphaerica|type=CDS|length=1197bp|location=Sequence derived from alignment at scaffold_41:809030..811521 (Clytia hemisphaerica)
CTACCTTTTTGCTACGGGTACAGACCAAAAGTAATAAAAAGATAATAGGT
TTTTAAACATTAGATGTATACATACTTTAACAGTACTTGACTGTCCAACA
AATTCAACTTTGACCAACGGAACACAATAATTAACAATTTCTTCAACAAC
ATACGAAGTTTTTCTTGAAAGTCTTTGGTGTGTGTTTATTTGTCGATCAA
ATTGCTTTGAAGTTCTTAAATCGCCGACAATATCATCCTTTTCGTTGTTA
AAATCGTCACTATCGTTACTTGAGCTTCTATCACCAATTGCCTTTTTGTT
TTTAGGGCTATTGTCGCTCTTATTCTTattgtcttttttgatttttgggc
tTTTCGGTATCTTAGGACTTCGTgatgtttttggactttgatCTCCACTC
CCTCTCAATTTTCTAAACAGTTTTGGACTATTTATACCACCAAAGAGTCT
TTTATCCTTTGAAATTCTTGGACTGCCTTCACTATTGCTTCTTGGGGCCT
TTGGACTTCCAATATCAAAACTTTGTGATTTTTCTCTCTTGTCACTATTA
ATTATTGGGTTCTTGGGACCAAAATCAAGACTTTTCGCTTTTTCTTTCcg
aatttgtttcatttttcgaCTGTATTGGTCATTAACAGagtcaaaattaa
aaactttgttTGCGCTATTGTCATTGTCACTAGAAATACTTTTCCTGTTA
TCTGTATTGATATTAGGACTGTCGGAGGAGCTTTCAGAGCTGATGGATAT
GAAACTGTTCCTGTTGGATTCAGGACTTCCCTTGTTGATTGCTTTATTAC
GTTTCCGAGTGAGTACAGGGCTGCTTCTGGGAAGTTTGCCGATCTCAGTA
TCATTGTCCTTTGTTTCCAAGTAGATAGGGCTCACACTTAGGCCCTTTGT
TTCGATTATATTACCATTCTCGTTGTTATCAGTCTCGGTGTTTTCTAGAG
CATGTGTTTCTGATAGTTTTTTATCAACAGCTTCAACCTTTTCgtgtaaa
atctcttttttgaTAGTATCATTTTCTTCATCGCTAATAATTTTCACCTT
TTCAAATAGAGTGTCTAAATGATATTGTTGCGTTTTACGAGTGTCCACTG
CATTACTTTGATTCCGATTTTCATCGATATTCGTGACGTGTTCCACCTTT
GTATGAACAGTCTCAATTTCAACTTTCCAATCCTGCACTTCAgccat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064287-exon-scaffold_41-1491911889:809030..811521 | TCONS_00064287-exon-scaffold_41-1491911889:809030..811521 | Clytia hemisphaerica | exon |
| TCONS_00064287-exon-scaffold_41-1510915933:809030..811521 | TCONS_00064287-exon-scaffold_41-1510915933:809030..811521 | Clytia hemisphaerica | exon |
| TCONS_00064287-exon-scaffold_41-1575043694:809030..811521 | TCONS_00064287-exon-scaffold_41-1575043694:809030..811521 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_41 | supercontig | scaffold_41:809030..811521 . |
Blast
The following BLAST results are available for this feature:
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