TCONS_00064283 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064283
Unique NameTCONS_00064283
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length713

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064283 ID=TCONS_00064283|Name=TCONS_00064283|organism=Clytia hemisphaerica|type=transcript|length=713bp
CGAAGCTATCCATTTACAGGTAATTTCTATTCCGAGTTTTATCGGACCCG
AGTAAATTCGATGTCATTTACTTTCAGTGAGGCAGTGATACAGACACAAA
ACCCAAAAGATgttaaaaaagtaagaaaagtATCTGTCTAACGTTCATAA
GATCAATATTAAATAAATGTTGAAGAAACTTAATGGGCGAGCTAGGTCGa
tagatcttttcataaattacgttacgaacatgacctgcctcgttttgaaa
ttattgccatggtgattaattCCGCCAGTGGATTTTATCagaactacttt
ctattcataaaaaaatcatttaatgtctcaagggacataatcaccatggt
aattgtttgaatatgaggcaagtgatattcgtgacgtaatttatgaaaag
gtctatttgacaGTTGTTTATTCTAAAGCATGGGAATGAATGGATAACAA
CGGTTGGTTATTACTGTGTGTTCTTGGTTgccttaaaaattttcttacgt
AATGAGCCCTTTCTTGTGCATAGAAATAAAATTACAGTTACTGGGAGTAA
CTTTTcccttttttataatttctctATGTAGTTGTAGAAATGTGTCTGGA
AgtagaaaatttattttcttccgccctgttcattttgactatagtTTTCC
TCAAACAGAGAtgtgaatttttaatttttcgttaTATTAATTTATGCTGT
AGATAGATTATTG
Run BLAST on NCBI

transcript from alignment at scaffold_41:730352..731064

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064283 ID=TCONS_00064283|Name=TCONS_00064283|organism=Clytia hemisphaerica|type=transcript|length=713bp|location=Sequence derived from alignment at scaffold_41:730352..731064 (Clytia hemisphaerica)
CAATAATCTATCTACAGCATAAATTAATAtaacgaaaaattaaaaattca
caTCTCTGTTTGAGGAAAactatagtcaaaatgaacagggcggaagaaaa
taaattttctacTTCCAGACACATTTCTACAACTACATagagaaattata
aaaaagggAAAAGTTACTCCCAGTAACTGTAATTTTATTTCTATGCACAA
GAAAGGGCTCATTacgtaagaaaatttttaaggcAACCAAGAACACACAG
TAATAACCAACCGTTGTTATCCATTCATTCCCATGCTTTAGAATAAACAA
Ctgtcaaatagaccttttcataaattacgtcacgaatatcacttgcctca
tattcaaacaattaccatggtgattatgtcccttgagacattaaatgatt
tttttatgaatagaaagtagttctGATAAAATCCACTGGCGGaattaatc
accatggcaataatttcaaaacgaggcaggtcatgttcgtaacgtaattt
atgaaaagatctatCGACCTAGCTCGCCCATTAAGTTTCTTCAACATTTA
TTTAATATTGATCTTATGAACGTTAGACAGATacttttcttactttttta
acATCTTTTGGGTTTTGTGTCTGTATCACTGCCTCACTGAAAGTAAATGA
CATCGAATTTACTCGGGTCCGATAAAACTCGGAATAGAAATTACCTGTAA
ATGGATAGCTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040303XLOC_040303Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064283-exon-scaffold_41-1491911889:730352..731064TCONS_00064283-exon-scaffold_41-1491911889:730352..731064Clytia hemisphaericaexon
TCONS_00064283-exon-scaffold_41-1510915933:730352..731064TCONS_00064283-exon-scaffold_41-1510915933:730352..731064Clytia hemisphaericaexon
TCONS_00064283-exon-scaffold_41-1575043694:730352..731064TCONS_00064283-exon-scaffold_41-1575043694:730352..731064Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_41supercontigscaffold_41:730352..731064 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0738146	0.07176	0.115739	0.211083	0.284942	0.225505	0.272363	0.425136	0.658306	0.889185	0.428701	0.547238	0.198876	0.147437	0	0.0864151	0.211425	0.111185	0.0759471	0.158204	0.389786	0.313018	0.830986	1.43444	1.29695	3.00339	9.04341	9.60921	20.0917	10.8758
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064283 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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