TCONS_00064282 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064282
Unique NameTCONS_00064282
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length659

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064282 ID=TCONS_00064282|Name=TCONS_00064282|organism=Clytia hemisphaerica|type=transcript|length=659bp
GCAGCGTTTCCTTCTCTTATGAATTGTGAAGTTGGTCTTGATGGATTGAC
CATAGAGCCAGGTCTGGACGTATTCACTATAGATACTGGTCTTGAATTAC
TGGTTGGTTTCGCAGGTAAAGGTGGTGGCGCTGCTGGCAGATCATCGTCT
GTCCTTGGTGATTTTTGTGGTAAGGGCGGAGGAGCGTCAAAGTTGGTTGA
TAGCCTCAAAGAGCGGCGCCTTTCACGCACCTCTCCGCTTGTGATTGGTG
GTAGAGGTGGAGGAGGCATTGCATCAGATGGTCTCCTCAAAGAACGTCTC
TTTTCTAAGATTTCGTTTGTAGACATTATACCGGAGGCTTCGGAGGAGCG
ACGAGAAGAATAACGTCTGTTCTGCATATCTTCCTTATCAGGAGTAGCCG
ATGATCTGCGAAGTGAATTTCTTTTCTCTGTGATGTTGGATAAAGAAGGG
AGTCCAACAGGCGGTGGAAAGCCGTCTTCATGGTTAGCTGAGGAAATGTT
ATTGTTGGGGAAGAAAGCAGGAGGAGGTGGCGGGGAAGCTACGTTGCTTC
TTGGAGGTGAAGGACAGAAAGAAAGACGATTGCTTGTAGGTAGTAGTGGT
GGTGGGGATGGAGGAGGAACATTAGTGACACCAGGAGGTAGAAGAGTGGG
TGCAGGAGG
Run BLAST on NCBI

protein sequence of TCONS_00064282-protein

>TCONS_00064282-protein ID=TCONS_00064282-protein|Name=TCONS_00064282-protein|organism=Clytia hemisphaerica|type=polypeptide|length=219bp
PPAPTLLPPGVTNVPPPSPPPLLPTSNRLSFCPSPPRSNVASPPPPPAFF
PNNNISSANHEDGFPPPVGLPSLSNITEKRNSLRRSSATPDKEDMQNRRY
SSRRSSEASGIMSTNEILEKRRSLRRPSDAMPPPPLPPITSGEVRERRRS
LRLSTNFDAPPPLPQKSPRTDDDLPAAPPPLPAKPTSNSRPVSIVNTSRP
GSMVNPSRPTSQFIREGNA
Run BLAST on NCBI

transcript from alignment at scaffold_41:697778..698436

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064282 ID=TCONS_00064282|Name=TCONS_00064282|organism=Clytia hemisphaerica|type=transcript|length=659bp|location=Sequence derived from alignment at scaffold_41:697778..698436 (Clytia hemisphaerica)
CCTCCTGCACCCACTCTTCTACCTCCTGGTGTCACTAATGTTCCTCCTCC
ATCCCCACCACCACTACTACCTACAAGCAATCGTCTTTCTTTCTGTCCTT
CACCTCCAAGAAGCAACGTAGCTTCCCCGCCACCTCCTCCTGCTTTCTTC
CCCAACAATAACATTTCCTCAGCTAACCATGAAGACGGCTTTCCACCGCC
TGTTGGACTCCCTTCTTTATCCAACATCACAGAGAAAAGAAATTCACTTC
GCAGATCATCGGCTACTCCTGATAAGGAAGATATGCAGAACAGACGTTAT
TCTTCTCGTCGCTCCTCCGAAGCCTCCGGTATAATGTCTACAAACGAAAT
CTTAGAAAAGAGACGTTCTTTGAGGAGACCATCTGATGCAATGCCTCCTC
CACCTCTACCACCAATCACAAGCGGAGAGGTGCGTGAAAGGCGCCGCTCT
TTGAGGCTATCAACCAACTTTGACGCTCCTCCGCCCTTACCACAAAAATC
ACCAAGGACAGACGATGATCTGCCAGCAGCGCCACCACCTTTACCTGCGA
AACCAACCAGTAATTCAAGACCAGTATCTATAGTGAATACGTCCAGACCT
GGCTCTATGGTCAATCCATCAAGACCAACTTCACAATTCATAAGAGAAGG
AAACGCTGC

Coding sequence (CDS) from alignment at scaffold_41:697778..698436

>TCONS_00064282 ID=TCONS_00064282|Name=TCONS_00064282|organism=Clytia hemisphaerica|type=CDS|length=657bp|location=Sequence derived from alignment at scaffold_41:697778..698436 (Clytia hemisphaerica)
CCTCCTGCACCCACTCTTCTACCTCCTGGTGTCACTAATGTTCCTCCTCC
ATCCCCACCACCACTACTACCTACAAGCAATCGTCTTTCTTTCTGTCCTT
CACCTCCAAGAAGCAACGTAGCTTCCCCGCCACCTCCTCCTGCTTTCTTC
CCCAACAATAACATTTCCTCAGCTAACCATGAAGACGGCTTTCCACCGCC
TGTTGGACTCCCTTCTTTATCCAACATCACAGAGAAAAGAAATTCACTTC
GCAGATCATCGGCTACTCCTGATAAGGAAGATATGCAGAACAGACGTTAT
TCTTCTCGTCGCTCCTCCGAAGCCTCCGGTATAATGTCTACAAACGAAAT
CTTAGAAAAGAGACGTTCTTTGAGGAGACCATCTGATGCAATGCCTCCTC
CACCTCTACCACCAATCACAAGCGGAGAGGTGCGTGAAAGGCGCCGCTCT
TTGAGGCTATCAACCAACTTTGACGCTCCTCCGCCCTTACCACAAAAATC
ACCAAGGACAGACGATGATCTGCCAGCAGCGCCACCACCTTTACCTGCGA
AACCAACCAGTAATTCAAGACCAGTATCTATAGTGAATACGTCCAGACCT
GGCTCTATGGTCAATCCATCAAGACCAACTTCACAATTCATAAGAGAAGG
AAACGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040302XLOC_040302Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064282-exon-scaffold_41-1491911889:697778..698436TCONS_00064282-exon-scaffold_41-1491911889:697778..698436Clytia hemisphaericaexon
TCONS_00064282-exon-scaffold_41-1510915933:697778..698436TCONS_00064282-exon-scaffold_41-1510915933:697778..698436Clytia hemisphaericaexon
TCONS_00064282-exon-scaffold_41-1575043694:697778..698436TCONS_00064282-exon-scaffold_41-1575043694:697778..698436Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064282-proteinTCONS_00064282-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_41supercontigscaffold_41:697778..698436 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.26143	0.845689	1.42826	1.57199	23.3903	16.0469	7.50068	10.7229	3.12251	4.36149	6.46987	2.57282	4.66659	5.60864	4.07385	6.91812	1.5388	3.51841	1.50855	1.22779	2.21057	3.23471	0.63277	1.97239	4.14767	3.55061	2.16209	1.38446	1.5751	1.42647
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064282 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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