TCONS_00064280 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064280
Unique NameTCONS_00064280
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length491

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064280 ID=TCONS_00064280|Name=TCONS_00064280|organism=Clytia hemisphaerica|type=transcript|length=491bp
CCACTGGTTTGGCATTCTTGTAGGTCTACCTATAATTATGCCTAGTAAGA
TATAAatacagatatcttatataaaacactggATGAAGCTTCTCCGTTTT
TGCCTAAGCAAAATAATGCACCTGTAAATCATAATTCGGCGCCGTAATTT
TTTCCAACCAAGACCATCCCCTCACCTCCTCGCTTCATAAAATGCTAGTT
AGTTTATGCTAGTAAAAAAGATTGCCGGCACCGAACTTTTGGcaatttat
tttgcttcaccttCCGTGGTTTTGGAAAGAGAGAAATTTATCTAGTGTTT
GATATAAGATATGTGTAGGTCATCTCACAAAGAGctgatcaaaaacaaaa
tcacgCACCACTCTCTACAATACGAGATCCTAAATGAGACAAGAGCCAAA
ATTATTTTATGGATGAAAGTGTCTTgtaaatttcactttttaaagGTACA
GTTACAGGGAGAGGATGGGGTAGAAATAAGAGCCcttttca
Run BLAST on NCBI

transcript from alignment at scaffold_41:652679..653169

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064280 ID=TCONS_00064280|Name=TCONS_00064280|organism=Clytia hemisphaerica|type=transcript|length=491bp|location=Sequence derived from alignment at scaffold_41:652679..653169 (Clytia hemisphaerica)
tgaaaagGGCTCTTATTTCTACCCCATCCTCTCCCTGTAACTGTACcttt
aaaaagtgaaatttacAAGACACTTTCATCCATAAAATAATTTTGGCTCT
TGTCTCATTTAGGATCTCGTATTGTAGAGAGTGGTGcgtgattttgtttt
tgatcagCTCTTTGTGAGATGACCTACACATATCTTATATCAAACACTAG
ATAAATTTCTCTCTTTCCAAAACCACGGaaggtgaagcaaaataaattgC
CAAAAGTTCGGTGCCGGCAATCTTTTTTACTAGCATAAACTAACTAGCAT
TTTATGAAGCGAGGAGGTGAGGGGATGGTCTTGGTTGGAAAAAATTACGG
CGCCGAATTATGATTTACAGGTGCATTATTTTGCTTAGGCAAAAACGGAG
AAGCTTCATccagtgttttatataagatatctgtatTTATATCTTACTAG
GCATAATTATAGGTAGACCTACAAGAATGCCAAACCAGTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040300XLOC_040300Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064280-exon-scaffold_41-1491911889:652679..653169TCONS_00064280-exon-scaffold_41-1491911889:652679..653169Clytia hemisphaericaexon
TCONS_00064280-exon-scaffold_41-1510915933:652679..653169TCONS_00064280-exon-scaffold_41-1510915933:652679..653169Clytia hemisphaericaexon
TCONS_00064280-exon-scaffold_41-1575043694:652679..653169TCONS_00064280-exon-scaffold_41-1575043694:652679..653169Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_41supercontigscaffold_41:652679..653169 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.125808	0	0	0	0.508976	0.402199	0.485237	0.151424	0.530078	0	0.6373	0.335149	0.251012	0.347571	0.0714377	0.153327	0	0.193603	0	0.419836	0.121638	0.177992	0.144249	0	0	1.4466	0	0.368209	0.139637	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064280 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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