TCONS_00064277 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064277
Unique NameTCONS_00064277
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length838

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064277 ID=TCONS_00064277|Name=TCONS_00064277|organism=Clytia hemisphaerica|type=transcript|length=838bp
CGATTTCGTTTTGAAAGAGTTGCATTTGATTACTATGGAACAATTTTGTG
TTGTTTCATTTATCTGTTTCGCTGTTtatatcatttcaaattttctgttT
ATGTTCTTTGAAACATTTTGGGTTTATAGTCACGTGGCGAAGATATCGTA
TAAGAAGTTGTGCGATTATATTGGTGAGCTTTGGGACTGGTGATAGATAG
AGAAGACACTGTTAGATTCTACTCGACCACTCGCAAAGTCAACATAACTG
AACATCGACATTCGATTGCAAGAATTTTGATTCAGTATCGCTGAAAGAGC
ATTAAAGCCCActaaaatttcttaaaagtAAGAACCAGGCAGCCAAATCA
AAGACGTTTTCAGGACCTTCTCCATAAACGAGTTAATCGAAAGTTATCGA
AAATGTTGATCTACTTACTGCTGGTCCAAAAAACCGTTAAAACTTATTTC
CAACAATTCAAGGTTCTTAACATCAATGAGATTTATTCTAAAATCTTTCT
AGCAGATTTTAACATGTTATGGAAACGTGGGCAAGATTGGATTGATGGAA
TGTTACCATTCAGTGACTTAAATGATGGTGATGATATTTTATTTGATGCG
ATCCAATCTTACCGGGAAACATTGAAAGTTGATTGATATTTATTCAATAG
TTTCGTGTGGTTTCCGTGTCATTTCATCATAACTTTGTAATCAAGAAACG
GGTCTTTAAATTAATGCCTGGAAATCAAGACCGATTTGGTATAAACTCAT
TAGtgtagaaatttttatttttatgttaaaCTAAAAGAAAGCAGTGCAAA
TATCAAACTTTGTCGCATTATTTCTGCATACCAGACTT
Run BLAST on NCBI

transcript from alignment at scaffold_41:597322..598159

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064277 ID=TCONS_00064277|Name=TCONS_00064277|organism=Clytia hemisphaerica|type=transcript|length=838bp|location=Sequence derived from alignment at scaffold_41:597322..598159 (Clytia hemisphaerica)
AAGTCTGGTATGCAGAAATAATGCGACAAAGTTTGATATTTGCACTGCTT
TCTTTTAGtttaacataaaaataaaaatttctacaCTAATGAGTTTATAC
CAAATCGGTCTTGATTTCCAGGCATTAATTTAAAGACCCGTTTCTTGATT
ACAAAGTTATGATGAAATGACACGGAAACCACACGAAACTATTGAATAAA
TATCAATCAACTTTCAATGTTTCCCGGTAAGATTGGATCGCATCAAATAA
AATATCATCACCATCATTTAAGTCACTGAATGGTAACATTCCATCAATCC
AATCTTGCCCACGTTTCCATAACATGTTAAAATCTGCTAGAAAGATTTTA
GAATAAATCTCATTGATGTTAAGAACCTTGAATTGTTGGAAATAAGTTTT
AACGGTTTTTTGGACCAGCAGTAAGTAGATCAACATTTTCGATAACTTTC
GATTAACTCGTTTATGGAGAAGGTCCTGAAAACGTCTTTGATTTGGCTGC
CTGGTTCTTacttttaagaaattttagTGGGCTTTAATGCTCTTTCAGCG
ATACTGAATCAAAATTCTTGCAATCGAATGTCGATGTTCAGTTATGTTGA
CTTTGCGAGTGGTCGAGTAGAATCTAACAGTGTCTTCTCTATCTATCACC
AGTCCCAAAGCTCACCAATATAATCGCACAACTTCTTATACGATATCTTC
GCCACGTGACTATAAACCCAAAATGTTTCAAAGAACATAaacagaaaatt
tgaaatgatataAACAGCGAAACAGATAAATGAAACAACACAAAATTGTT
CCATAGTAATCAAATGCAACTCTTTCAAAACGAAATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040297XLOC_040297Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064277-exon-scaffold_41-1491911889:597322..598159TCONS_00064277-exon-scaffold_41-1491911889:597322..598159Clytia hemisphaericaexon
TCONS_00064277-exon-scaffold_41-1510915933:597322..598159TCONS_00064277-exon-scaffold_41-1510915933:597322..598159Clytia hemisphaericaexon
TCONS_00064277-exon-scaffold_41-1575043694:597322..598159TCONS_00064277-exon-scaffold_41-1575043694:597322..598159Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_41supercontigscaffold_41:597322..598159 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0564034	0.0550022	0	0.0624798	0.0760631	0	2.17546	1.49354	6.3215	1.88396	3.37151	3.98182	14.5922	11.8818	10.3129	21.6879	17.3178	17.3162	0	0	21.1592	18.0347	16.7498	12.5822	11.2638	17.0246	2.32021	0.907936	0	0.127566
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064277 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top