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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064272 ID=TCONS_00064272|Name=TCONS_00064272|organism=Clytia hemisphaerica|type=transcript|length=3088bp
acggCTGCGAACTATTTTCATGAAATGTATGATATTACTAACTTAAAAAA
TGCAAGCTAGACGTAATAATATATTCACAAGATGTAAGAGAAAGCTTATA
ATCAATGCTAGGTTTAATTATTGACAGAAGCTGGAAAATTTAGGTTTCGT
GTAGGTCATTTGAGAACGTGAACGGTTTTCtttcatattaaaaaaaacaa
caacagaaaaCGTTGACTTAATTAATATTAAAAGAGTAAAAGAagacaat
ggctttcactaacattgtaaaacaaaaacgaaattcGACCTTATTTTAGA
GTATTACAAGAAAAGGGCCTTTAAATCAAGTTCAAAAGATTTAATAAATA
GTCCATCAATCAAAAATGACAATCATCAATACCATCCCTCCCAACGAAAG
GAGCAAAATTTATGTAAACATTGTTTATTTAGTAGGTGACGTGCATAGAC
AGTCATTAGTACTCTCGATACGTTTCAATGTAGGTACATGTTCTCTAGAC
GGAAAGGTATTCGAGCGTTTGACCTGATTCGAACGTTTCAATGTTGTGTC
ACCGTTGTCGCTACGCGGTGATATCTGCATGGTTGAGCATTGATGTAAAA
GACTATCCAGTGTACTGTTTATCTCGGCTATCTCACGACTTTGTGGTCTA
TAGGTCCGCGCACTTTGCGGTCTCCTGGGTTTACTTTGAACGGGTTGTTT
CGGTCGTAATTTTACGCTTTttaaagcaatgttttgttcccATTGAGCGA
AACGAAGTTGCGAGATTTGTTGATTCTGAGTGTTGATCTGTTTACTTTGA
TCCTTCAGTATCTGTTGGTGAATCTCTATCGCTTTTAAAATACGATTCAG
TTTATGACGAGCTGAAATAATTTCGCTGACCATCTCACTTAAAGCTCTTG
TTAAGGCGGGTTTCAATTGTTCCGGATCTTCAGGAAGCGGTACGATAGAA
AATAGGGTATCGGTTAACGGGTCGGAAATGGAGCCGTCCGGTTGAAAATC
AGCGGAACCACCATCAGAAGAAACAACTTCCCAATCGAACGGTATTTCAT
CTTCCACCACTTTATGCGGACTCTCGTGGAAAACTTCTTCCTCGTGATCA
ACAGGGGGCGGCGGAGGGAAATTCAAATCCAAAATGGAAGTCTGACTTTC
ACTTAAATCTAAATCACTTCCACACGTGGCAGCGTTCGAATCAGACTTGA
TCAATTTGGCATCTTGGTATCGTAATTGTAATTGGTTTGACGTCATCGGG
TTACCAACACAACCGACAGATTTGGCTCTCTGGCGGTCTTTGCCTGGCTC
GTTACCTCCGGTCACACATTTCTGTGGTGATTCCATCGGAACTCCTTCAA
TGACCGGATCCATGAGAGCTCGCGAGTTCCCAATACCTTCCCCGCCTAAA
CTAGACGTACGTGAACTCGACAAATCCATTTTGTTACCCCAGCTCTCTAG
TTTCTCTGGTTGTTTATCTTCAGCATTTGGTGACGGGAAATCAACAGATT
TTGCTATTGGTTGTGCTTTATTCAACGTCAACCGCATTTCAGTGTGTTGC
GACGCACTATGACAACGTTGTAAATTACGCCGAATAACAGGAACAGATTT
TGGGCTAACACTAACTTTGGATGTCACCGATTCACCTTCGACAGGCTCTT
TGGGAGGGATCGAAGCTTCACGTTTAAGGCCTTTAGAAGCCACCGGGGGT
CCCATTTTCGGTTTCTTAGCGATAGCTGGTTTTTCTTTCTTAGCGCTTGT
GTTTCTGGAGACAGCTGGAGAAGATTCTGCTACAGGGGCTGAAGTTGGCT
CAATGATGTCCTCTTCAACGTTGGCTAATGGAAATTTCGGTGGTTCTTCA
TGGACAGCTTTCTCAAGCTGCGTCTCGAATTCATCACCGAAAACTTGCTG
TGCTAAATGTTCTAACGATTTACTGAAACGATGACTTTTCCTTAACGATG
GTTTCGGTTTGGCATCGCTTTCAGTCGAGGAACGTCTCATCTGGACCTGG
CGTCTCAGAGCCGGTGAAGCGGGTAAACGATCTGTATTAAAGCCAGCTTT
AGCGTGCGCTTGATCCAAAAGAGAAACCTTCTTAGAAGGTGAGGTGGGTA
GGCTTTTCGATTTGGTCAGAATACCTGGTTTATGGGTACCGTTTTCCTTG
TGTTTCTTGATGAGCGTTGTATCAGGTGTTGTTTCAGGCGAGGTGTGCGG
AGACTCGAGAAATTCTTGTATACTCAAGTTACCAACTTCAAATGCTTTCA
TAACACCATCATCAAAAAGTTTATCGTCAGCCATATTGTCTATAGTACCG
TTAGGACTTTGAACGTCCTTGAAATGTACTTTCCTACCACTCTCTGTTTC
AAACGAATCATCCTTTCCTGCAAGTGGAGCTCTACTTCGTGGCTCACCGT
TCGAGCGGCCGAGCGAATTCGATTGCATCGGTTTGGGTGATTGTTGTTTC
TCTGTCAGAGCTGTCTCGTCTAAGCTCTTAGAGTGAAAAAGTTTCGGTTT
TTTAAACAGAGGTTTCGAGCCACCGCCCCCACTACTGTCTTCTTTCAGAG
ACGATCGATTCAAACTGTTACGCCCTCtacgaaaaaacttttgaagcatt
ttcttaCTGTTGTAACATGTAACACACACgaaaatatttctcaatttcaa
agtttaaatATTTTCTACAAATGTTATGAGATGTGTCTCtcaagtttcaa
tttttcacttcaaattttgaacaaaCAATGTTCTATATATAATCAAGGAA
CAGCAAGCAGTTCATAATCTTCCTTTCATCAATCTTGCATGGGACAAGAG
ACGTCCTAAAAAGTTCTATATTTTTACAACGCAGGTGTTTTATTTGTTGA
AGAAAAATCAATACAGTCAATCAATCCAATATTAATAACTCGTATTATTT
TCCGCACGTTGAATCACCATATTCAATATTTATAACCCAAATATAATTCC
AATATATTATTTCACCCtctcattttttttcatttttttgttcccTTGCA
TACAACCAATGTTCATCTTTCAAAACCAACTTCTAAACCAAACcaaacat
tcaaattttttgtacttttcttcaagtaaaaaagtaaa Run BLAST on NCBI protein sequence of TCONS_00064272-protein >TCONS_00064272-protein ID=TCONS_00064272-protein|Name=TCONS_00064272-protein|organism=Clytia hemisphaerica|type=polypeptide|length=724bp
MLQKFFRRGRNSLNRSSLKEDSSGGGGSKPLFKKPKLFHSKSLDETALTE
KQQSPKPMQSNSLGRSNGEPRSRAPLAGKDDSFETESGRKVHFKDVQSPN
GTIDNMADDKLFDDGVMKAFEVGNLSIQEFLESPHTSPETTPDTTLIKKH
KENGTHKPGILTKSKSLPTSPSKKVSLLDQAHAKAGFNTDRLPASPALRR
QVQMRRSSTESDAKPKPSLRKSHRFSKSLEHLAQQVFGDEFETQLEKAVH
EEPPKFPLANVEEDIIEPTSAPVAESSPAVSRNTSAKKEKPAIAKKPKMG
PPVASKGLKREASIPPKEPVEGESVTSKVSVSPKSVPVIRRNLQRCHSAS
QHTEMRLTLNKAQPIAKSVDFPSPNAEDKQPEKLESWGNKMDLSSSRTSS
LGGEGIGNSRALMDPVIEGVPMESPQKCVTGGNEPGKDRQRAKSVGCVGN
PMTSNQLQLRYQDAKLIKSDSNAATCGSDLDLSESQTSILDLNFPPPPPV
DHEEEVFHESPHKVVEDEIPFDWEVVSSDGGSADFQPDGSISDPLTDTLF
SIVPLPEDPEQLKPALTRALSEMVSEIISARHKLNRILKAIEIHQQILKD
QSKQINTQNQQISQLRFAQWEQNIALKSVKLRPKQPVQSKPRRPQSARTY
RPQSREIAEINSTLDSLLHQCSTMQISPRSDNGDTTLKRSNQVKRSNTFP
SREHVPTLKRIESTNDCLCTSPTK Run BLAST on NCBI transcript from alignment at scaffold_41:546725..549812 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064272 ID=TCONS_00064272|Name=TCONS_00064272|organism=Clytia hemisphaerica|type=transcript|length=3088bp|location=Sequence derived from alignment at scaffold_41:546725..549812 (Clytia hemisphaerica)
tttacttttttacttgaagaaaagtacaaaaaatttgaatgtttgGTTTG
GTTTAGAAGTTGGTTTTGAAAGATGAACATTGGTTGTATGCAAgggaaca
aaaaaatgaaaaaaaatgagaGGGTGAAATAATATATTGGAATTATATTT
GGGTTATAAATATTGAATATGGTGATTCAACGTGCGGAAAATAATACGAG
TTATTAATATTGGATTGATTGACTGTATTGATTTTTCTTCAACAAATAAA
ACACCTGCGTTGTAAAAATATAGAACTTTTTAGGACGTCTCTTGTCCCAT
GCAAGATTGATGAAAGGAAGATTATGAACTGCTTGCTGTTCCTTGATTAT
ATATAGAACATTGtttgttcaaaatttgaagtgaaaaattgaaacttgaG
AGACACATCTCATAACATTTGTAGAAAATatttaaactttgaaattgaga
aatattttcGTGTGTGTTACATGTTACAACAGtaagaaaatgcttcaaaa
gttttttcgtaGAGGGCGTAACAGTTTGAATCGATCGTCTCTGAAAGAAG
ACAGTAGTGGGGGCGGTGGCTCGAAACCTCTGTTTAAAAAACCGAAACTT
TTTCACTCTAAGAGCTTAGACGAGACAGCTCTGACAGAGAAACAACAATC
ACCCAAACCGATGCAATCGAATTCGCTCGGCCGCTCGAACGGTGAGCCAC
GAAGTAGAGCTCCACTTGCAGGAAAGGATGATTCGTTTGAAACAGAGAGT
GGTAGGAAAGTACATTTCAAGGACGTTCAAAGTCCTAACGGTACTATAGA
CAATATGGCTGACGATAAACTTTTTGATGATGGTGTTATGAAAGCATTTG
AAGTTGGTAACTTGAGTATACAAGAATTTCTCGAGTCTCCGCACACCTCG
CCTGAAACAACACCTGATACAACGCTCATCAAGAAACACAAGGAAAACGG
TACCCATAAACCAGGTATTCTGACCAAATCGAAAAGCCTACCCACCTCAC
CTTCTAAGAAGGTTTCTCTTTTGGATCAAGCGCACGCTAAAGCTGGCTTT
AATACAGATCGTTTACCCGCTTCACCGGCTCTGAGACGCCAGGTCCAGAT
GAGACGTTCCTCGACTGAAAGCGATGCCAAACCGAAACCATCGTTAAGGA
AAAGTCATCGTTTCAGTAAATCGTTAGAACATTTAGCACAGCAAGTTTTC
GGTGATGAATTCGAGACGCAGCTTGAGAAAGCTGTCCATGAAGAACCACC
GAAATTTCCATTAGCCAACGTTGAAGAGGACATCATTGAGCCAACTTCAG
CCCCTGTAGCAGAATCTTCTCCAGCTGTCTCCAGAAACACAAGCGCTAAG
AAAGAAAAACCAGCTATCGCTAAGAAACCGAAAATGGGACCCCCGGTGGC
TTCTAAAGGCCTTAAACGTGAAGCTTCGATCCCTCCCAAAGAGCCTGTCG
AAGGTGAATCGGTGACATCCAAAGTTAGTGTTAGCCCAAAATCTGTTCCT
GTTATTCGGCGTAATTTACAACGTTGTCATAGTGCGTCGCAACACACTGA
AATGCGGTTGACGTTGAATAAAGCACAACCAATAGCAAAATCTGTTGATT
TCCCGTCACCAAATGCTGAAGATAAACAACCAGAGAAACTAGAGAGCTGG
GGTAACAAAATGGATTTGTCGAGTTCACGTACGTCTAGTTTAGGCGGGGA
AGGTATTGGGAACTCGCGAGCTCTCATGGATCCGGTCATTGAAGGAGTTC
CGATGGAATCACCACAGAAATGTGTGACCGGAGGTAACGAGCCAGGCAAA
GACCGCCAGAGAGCCAAATCTGTCGGTTGTGTTGGTAACCCGATGACGTC
AAACCAATTACAATTACGATACCAAGATGCCAAATTGATCAAGTCTGATT
CGAACGCTGCCACGTGTGGAAGTGATTTAGATTTAAGTGAAAGTCAGACT
TCCATTTTGGATTTGAATTTCCCTCCGCCGCCCCCTGTTGATCACGAGGA
AGAAGTTTTCCACGAGAGTCCGCATAAAGTGGTGGAAGATGAAATACCGT
TCGATTGGGAAGTTGTTTCTTCTGATGGTGGTTCCGCTGATTTTCAACCG
GACGGCTCCATTTCCGACCCGTTAACCGATACCCTATTTTCTATCGTACC
GCTTCCTGAAGATCCGGAACAATTGAAACCCGCCTTAACAAGAGCTTTAA
GTGAGATGGTCAGCGAAATTATTTCAGCTCGTCATAAACTGAATCGTATT
TTAAAAGCGATAGAGATTCACCAACAGATACTGAAGGATCAAAGTAAACA
GATCAACACTCAGAATCAACAAATCTCGCAACTTCGTTTCGCTCAATggg
aacaaaacattgctttaaAAAGCGTAAAATTACGACCGAAACAACCCGTT
CAAAGTAAACCCAGGAGACCGCAAAGTGCGCGGACCTATAGACCACAAAG
TCGTGAGATAGCCGAGATAAACAGTACACTGGATAGTCTTTTACATCAAT
GCTCAACCATGCAGATATCACCGCGTAGCGACAACGGTGACACAACATTG
AAACGTTCGAATCAGGTCAAACGCTCGAATACCTTTCCGTCTAGAGAACA
TGTACCTACATTGAAACGTATCGAGAGTACTAATGACTGTCTATGCACGT
CACCTACTAAATAAACAATGTTTACATAAATTTTGCTCCTTTCGTTGGGA
GGGATGGTATTGATGATTGTCATTTTTGATTGATGGACTATTTATTAAAT
CTTTTGAACTTGATTTAAAGGCCCTTTTCTTGTAATACTCTAAAATAAGG
TCgaatttcgtttttgttttacaatgttagtgaaagccattgtctTCTTT
TACTCTTTTAATATTAATTAAGTCAACGttttctgttgttgtttttttta
atatgaaaGAAAACCGTTCACGTTCTCAAATGACCTACACGAAACCTAAA
TTTTCCAGCTTCTGTCAATAATTAAACCTAGCATTGATTATAAGCTTTCT
CTTACATCTTGTGAATATATTATTACGTCTAGCTTGCATTTTTTAAGTTA
GTAATATCATACATTTCATGAAAATAGTTCGCAGccgt Coding sequence (CDS) from alignment at scaffold_41:546725..549812 >TCONS_00064272 ID=TCONS_00064272|Name=TCONS_00064272|organism=Clytia hemisphaerica|type=CDS|length=2175bp|location=Sequence derived from alignment at scaffold_41:546725..549812 (Clytia hemisphaerica)
atgcttcaaaagttttttcgtaGAGGGCGTAACAGTTTGAATCGATCGTC
TCTGAAAGAAGACAGTAGTGGGGGCGGTGGCTCGAAACCTCTGTTTAAAA
AACCGAAACTTTTTCACTCTAAGAGCTTAGACGAGACAGCTCTGACAGAG
AAACAACAATCACCCAAACCGATGCAATCGAATTCGCTCGGCCGCTCGAA
CGGTGAGCCACGAAGTAGAGCTCCACTTGCAGGAAAGGATGATTCGTTTG
AAACAGAGAGTGGTAGGAAAGTACATTTCAAGGACGTTCAAAGTCCTAAC
GGTACTATAGACAATATGGCTGACGATAAACTTTTTGATGATGGTGTTAT
GAAAGCATTTGAAGTTGGTAACTTGAGTATACAAGAATTTCTCGAGTCTC
CGCACACCTCGCCTGAAACAACACCTGATACAACGCTCATCAAGAAACAC
AAGGAAAACGGTACCCATAAACCAGGTATTCTGACCAAATCGAAAAGCCT
ACCCACCTCACCTTCTAAGAAGGTTTCTCTTTTGGATCAAGCGCACGCTA
AAGCTGGCTTTAATACAGATCGTTTACCCGCTTCACCGGCTCTGAGACGC
CAGGTCCAGATGAGACGTTCCTCGACTGAAAGCGATGCCAAACCGAAACC
ATCGTTAAGGAAAAGTCATCGTTTCAGTAAATCGTTAGAACATTTAGCAC
AGCAAGTTTTCGGTGATGAATTCGAGACGCAGCTTGAGAAAGCTGTCCAT
GAAGAACCACCGAAATTTCCATTAGCCAACGTTGAAGAGGACATCATTGA
GCCAACTTCAGCCCCTGTAGCAGAATCTTCTCCAGCTGTCTCCAGAAACA
CAAGCGCTAAGAAAGAAAAACCAGCTATCGCTAAGAAACCGAAAATGGGA
CCCCCGGTGGCTTCTAAAGGCCTTAAACGTGAAGCTTCGATCCCTCCCAA
AGAGCCTGTCGAAGGTGAATCGGTGACATCCAAAGTTAGTGTTAGCCCAA
AATCTGTTCCTGTTATTCGGCGTAATTTACAACGTTGTCATAGTGCGTCG
CAACACACTGAAATGCGGTTGACGTTGAATAAAGCACAACCAATAGCAAA
ATCTGTTGATTTCCCGTCACCAAATGCTGAAGATAAACAACCAGAGAAAC
TAGAGAGCTGGGGTAACAAAATGGATTTGTCGAGTTCACGTACGTCTAGT
TTAGGCGGGGAAGGTATTGGGAACTCGCGAGCTCTCATGGATCCGGTCAT
TGAAGGAGTTCCGATGGAATCACCACAGAAATGTGTGACCGGAGGTAACG
AGCCAGGCAAAGACCGCCAGAGAGCCAAATCTGTCGGTTGTGTTGGTAAC
CCGATGACGTCAAACCAATTACAATTACGATACCAAGATGCCAAATTGAT
CAAGTCTGATTCGAACGCTGCCACGTGTGGAAGTGATTTAGATTTAAGTG
AAAGTCAGACTTCCATTTTGGATTTGAATTTCCCTCCGCCGCCCCCTGTT
GATCACGAGGAAGAAGTTTTCCACGAGAGTCCGCATAAAGTGGTGGAAGA
TGAAATACCGTTCGATTGGGAAGTTGTTTCTTCTGATGGTGGTTCCGCTG
ATTTTCAACCGGACGGCTCCATTTCCGACCCGTTAACCGATACCCTATTT
TCTATCGTACCGCTTCCTGAAGATCCGGAACAATTGAAACCCGCCTTAAC
AAGAGCTTTAAGTGAGATGGTCAGCGAAATTATTTCAGCTCGTCATAAAC
TGAATCGTATTTTAAAAGCGATAGAGATTCACCAACAGATACTGAAGGAT
CAAAGTAAACAGATCAACACTCAGAATCAACAAATCTCGCAACTTCGTTT
CGCTCAATgggaacaaaacattgctttaaAAAGCGTAAAATTACGACCGA
AACAACCCGTTCAAAGTAAACCCAGGAGACCGCAAAGTGCGCGGACCTAT
AGACCACAAAGTCGTGAGATAGCCGAGATAAACAGTACACTGGATAGTCT
TTTACATCAATGCTCAACCATGCAGATATCACCGCGTAGCGACAACGGTG
ACACAACATTGAAACGTTCGAATCAGGTCAAACGCTCGAATACCTTTCCG
TCTAGAGAACATGTACCTACATTGAAACGTATCGAGAGTACTAATGACTG
TCTATGCACGTCACCTACTAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064272-exon-scaffold_41-1491911889:546725..549812 | TCONS_00064272-exon-scaffold_41-1491911889:546725..549812 | Clytia hemisphaerica | exon |
| TCONS_00064272-exon-scaffold_41-1510915933:546725..549812 | TCONS_00064272-exon-scaffold_41-1510915933:546725..549812 | Clytia hemisphaerica | exon |
| TCONS_00064272-exon-scaffold_41-1575043694:546725..549812 | TCONS_00064272-exon-scaffold_41-1575043694:546725..549812 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_41 | supercontig | scaffold_41:546725..549812 . |
Blast
The following BLAST results are available for this feature:
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