TCONS_00064270 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064270
Unique NameTCONS_00064270
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length356

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064270 ID=TCONS_00064270|Name=TCONS_00064270|organism=Clytia hemisphaerica|type=transcript|length=356bp
tttttcttttccgaAGCTTGTATCCTTCATGCATTTCTTATACTCTTACA
AAATTGGCTCTGATATTTACTCCTCATTCCTGAAGGGTTGCTTTTTTTAT
CCGTCCTGTCTTTTGGTCATTCTTCTTCCGTAAATCCAACGAATTGTAGA
ActtatttcaattaaatttgtcttataaaagaaacgcaCTTGAACAATCC
TTGACCCCCTGATCGTAAAATTGATGATTACAGTTTAACGACGaatgatt
ttgttgatttcttttGAGGCACTTTTATGACACCAGTCTTGTTATTAACA
TGATTAGTTTTCGTATGGGACATTAGGAAGCAGAACTTCAGCTGAGATCC
TTCAGT
Run BLAST on NCBI

transcript from alignment at scaffold_41:527248..527603

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064270 ID=TCONS_00064270|Name=TCONS_00064270|organism=Clytia hemisphaerica|type=transcript|length=356bp|location=Sequence derived from alignment at scaffold_41:527248..527603 (Clytia hemisphaerica)
ACTGAAGGATCTCAGCTGAAGTTCTGCTTCCTAATGTCCCATACGAAAAC
TAATCATGTTAATAACAAGACTGGTGTCATAAAAGTGCCTCaaaagaaat
caacaaaatcattCGTCGTTAAACTGTAATCATCAATTTTACGATCAGGG
GGTCAAGGATTGTTCAAGtgcgtttcttttataagacaaatttaattgaa
ataagTTCTACAATTCGTTGGATTTACGGAAGAAGAATGACCAAAAGACA
GGACGGATAAAAAAAGCAACCCTTCAGGAATGAGGAGTAAATATCAGAGC
CAATTTTGTAAGAGTATAAGAAATGCATGAAGGATACAAGCTtcggaaaa
gaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040290XLOC_040290Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064270-exon-scaffold_41-1491911889:527248..527603TCONS_00064270-exon-scaffold_41-1491911889:527248..527603Clytia hemisphaericaexon
TCONS_00064270-exon-scaffold_41-1510915933:527248..527603TCONS_00064270-exon-scaffold_41-1510915933:527248..527603Clytia hemisphaericaexon
TCONS_00064270-exon-scaffold_41-1575043694:527248..527603TCONS_00064270-exon-scaffold_41-1575043694:527248..527603Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_41supercontigscaffold_41:527248..527603 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.7397	0.552447	1.26508	1.07453	2.1873	1.54313	0	1.94639	1.24158	0.740142	0	0.958794	0.82108	2.49881	0.39044	1.42929	0.993778	0.542317	0.401273	0.493768	1.46361	3.48434	1.39653	2.30832	0.571138	0.348994	1.72663	2.52209	0.798691	1.82855
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064270 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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