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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064268 ID=TCONS_00064268|Name=TCONS_00064268|organism=Clytia hemisphaerica|type=transcript|length=1094bp
GGCTGCCACACTTCGACTTCGAATATCAATACTCAGGCGAGTCGACAGAA
AACTTTTCAAGTAGCGTTTCCAAGTGTTCACAATTCTCCTTGCACGACGG
TCGCTCAAAATGTACAAGATGGAATTACCGACTGGTGTCATACAAAGTAT
CAAGTAGGAAGCCGAGTGGAAGAACTGTAGAAGATATGTCGAGTTATTCT
CCAACTCGACTGTATACACCATTTTGAATGTTGACGTCACAAAGAAACAT
AAACGGAAAGGTACGTAAGTCATTAACGTATAAATTGTCACTTTACGTAA
CGTATTTTCCGCCAGACTGATTCGCCCCTTCTCATATATAGTTCCACGTC
GGCCTTGTGCGATCACCATTGCCCGATTATAGAACATGGGGATGATGATT
GGGACGCAGATGTCTGTTAAACATGGTGGTAAATTGATGACGACTAGATT
GTCAATAATTGAGCCCCATAGTAGCAAACCGGAAAAAGCAACTCCATAAC
AGATTGCAACCATTAGTAGAATTTTAGCTCTNCCCCATAGTAGCAAACCG
GAAAAAGCAACTCCATAACAGATTGCAACCATAAGTAGAATTTTAGCTCG
TTTTAAAGTCAGTATTAAGCTCATCGAGAGCAAATGTTTTGTACTCAAGT
ATCTCAAAATGCTGACTTCAACGATAAGAGCGATTGATGTGTTCGATAAG
GACTGCGAGAAAAACATAGCAGTGAGATCAAACGAACAATTGAGCCTGGG
TAACATGAGTTTAGCTGCGTAACTAGACTGTGCAACTATTGTAAATATGA
TATCGTTGAAGGCAAGATGGTAGAGAAGCCACATACATGGTTTCCGTTGG
ATACGTGTGATGGttgatttgatgatttttaacaCGGAACATGCGAAAAG
GAGGTTAAGGGCTAATATGATAAGGTCAGCCAGTAAAAACAAAGACTGGT
CTAATTCCCCTAAACGTCTTGTGCGTGTAAAGAACGGAGTCGTACACCAA
CGATCAGGAGTGATTTCCATGTTTTGTGTGTAACTCGAATTAGATAAAGC
ACCACCCATAATGAAATTATGGTTGTTGAATCAGTCGAAATACG Run BLAST on NCBI protein sequence of TCONS_00064268-protein >TCONS_00064268-protein ID=TCONS_00064268-protein|Name=TCONS_00064268-protein|organism=Clytia hemisphaerica|type=polypeptide|length=353bp
MGGALSNSSYTQNMEITPDRWCTTPFFTRTRRLGELDQSLFLLADLIILA
LNLLFACSVLKIIKSTITRIQRKPCMWLLYHLAFNDIIFTIVAQSSYAAK
LMLPRLNCSFDLTAMFFSQSLSNTSIALIVEVSILRYLSTKHLLSMSLIL
TLKRAKILLMVAICYGVAFSGLLLWXRAKILLMVAICYGVAFSGLLLWGS
IIDNLVVINLPPCLTDICVPIIIPMFYNRAMVIAQGRRGTIYEKGRISLA
ENTLRKVTIYTLMTYVPFRLCFFVTSTFKMVYTVELENNSTYLLQFFHSA
SYLILCMTPVGNSILYILSDRRARRIVNTWKRYLKSFLSTRLSIDIRSRS
VAA Run BLAST on NCBI transcript from alignment at scaffold_41:441878..442971 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064268 ID=TCONS_00064268|Name=TCONS_00064268|organism=Clytia hemisphaerica|type=transcript|length=1094bp|location=Sequence derived from alignment at scaffold_41:441878..442971 (Clytia hemisphaerica)
CGTATTTCGACTGATTCAACAACCATAATTTCATTATGGGTGGTGCTTTA
TCTAATTCGAGTTACACACAAAACATGGAAATCACTCCTGATCGTTGGTG
TACGACTCCGTTCTTTACACGCACAAGACGTTTAGGGGAATTAGACCAGT
CTTTGTTTTTACTGGCTGACCTTATCATATTAGCCCTTAACCTCCTTTTC
GCATGTTCCGtgttaaaaatcatcaaatcaaCCATCACACGTATCCAACG
GAAACCATGTATGTGGCTTCTCTACCATCTTGCCTTCAACGATATCATAT
TTACAATAGTTGCACAGTCTAGTTACGCAGCTAAACTCATGTTACCCAGG
CTCAATTGTTCGTTTGATCTCACTGCTATGTTTTTCTCGCAGTCCTTATC
GAACACATCAATCGCTCTTATCGTTGAAGTCAGCATTTTGAGATACTTGA
GTACAAAACATTTGCTCTCGATGAGCTTAATACTGACTTTAAAACGAGCT
AAAATTCTACTTATGGTTGCAATCTGTTATGGAGTTGCTTTTTCCGGTTT
GCTACTATGGGGNAGAGCTAAAATTCTACTAATGGTTGCAATCTGTTATG
GAGTTGCTTTTTCCGGTTTGCTACTATGGGGCTCAATTATTGACAATCTA
GTCGTCATCAATTTACCACCATGTTTAACAGACATCTGCGTCCCAATCAT
CATCCCCATGTTCTATAATCGGGCAATGGTGATCGCACAAGGCCGACGTG
GAACTATATATGAGAAGGGGCGAATCAGTCTGGCGGAAAATACGTTACGT
AAAGTGACAATTTATACGTTAATGACTTACGTACCTTTCCGTTTATGTTT
CTTTGTGACGTCAACATTCAAAATGGTGTATACAGTCGAGTTGGAGAATA
ACTCGACATATCTTCTACAGTTCTTCCACTCGGCTTCCTACTTGATACTT
TGTATGACACCAGTCGGTAATTCCATCTTGTACATTTTGAGCGACCGTCG
TGCAAGGAGAATTGTGAACACTTGGAAACGCTACTTGAAAAGTTTTCTGT
CGACTCGCCTGAGTATTGATATTCGAAGTCGAAGTGTGGCAGCC Coding sequence (CDS) from alignment at scaffold_41:441878..442971 >TCONS_00064268 ID=TCONS_00064268|Name=TCONS_00064268|organism=Clytia hemisphaerica|type=CDS|length=1059bp|location=Sequence derived from alignment at scaffold_41:441878..442971 (Clytia hemisphaerica)
ATGGGTGGTGCTTTATCTAATTCGAGTTACACACAAAACATGGAAATCAC
TCCTGATCGTTGGTGTACGACTCCGTTCTTTACACGCACAAGACGTTTAG
GGGAATTAGACCAGTCTTTGTTTTTACTGGCTGACCTTATCATATTAGCC
CTTAACCTCCTTTTCGCATGTTCCGtgttaaaaatcatcaaatcaaCCAT
CACACGTATCCAACGGAAACCATGTATGTGGCTTCTCTACCATCTTGCCT
TCAACGATATCATATTTACAATAGTTGCACAGTCTAGTTACGCAGCTAAA
CTCATGTTACCCAGGCTCAATTGTTCGTTTGATCTCACTGCTATGTTTTT
CTCGCAGTCCTTATCGAACACATCAATCGCTCTTATCGTTGAAGTCAGCA
TTTTGAGATACTTGAGTACAAAACATTTGCTCTCGATGAGCTTAATACTG
ACTTTAAAACGAGCTAAAATTCTACTTATGGTTGCAATCTGTTATGGAGT
TGCTTTTTCCGGTTTGCTACTATGGGGNAGAGCTAAAATTCTACTAATGG
TTGCAATCTGTTATGGAGTTGCTTTTTCCGGTTTGCTACTATGGGGCTCA
ATTATTGACAATCTAGTCGTCATCAATTTACCACCATGTTTAACAGACAT
CTGCGTCCCAATCATCATCCCCATGTTCTATAATCGGGCAATGGTGATCG
CACAAGGCCGACGTGGAACTATATATGAGAAGGGGCGAATCAGTCTGGCG
GAAAATACGTTACGTAAAGTGACAATTTATACGTTAATGACTTACGTACC
TTTCCGTTTATGTTTCTTTGTGACGTCAACATTCAAAATGGTGTATACAG
TCGAGTTGGAGAATAACTCGACATATCTTCTACAGTTCTTCCACTCGGCT
TCCTACTTGATACTTTGTATGACACCAGTCGGTAATTCCATCTTGTACAT
TTTGAGCGACCGTCGTGCAAGGAGAATTGTGAACACTTGGAAACGCTACT
TGAAAAGTTTTCTGTCGACTCGCCTGAGTATTGATATTCGAAGTCGAAGT
GTGGCAGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064268-exon-scaffold_41-1491911889:441878..442971 | TCONS_00064268-exon-scaffold_41-1491911889:441878..442971 | Clytia hemisphaerica | exon |
| TCONS_00064268-exon-scaffold_41-1510915933:441878..442971 | TCONS_00064268-exon-scaffold_41-1510915933:441878..442971 | Clytia hemisphaerica | exon |
| TCONS_00064268-exon-scaffold_41-1575043694:441878..442971 | TCONS_00064268-exon-scaffold_41-1575043694:441878..442971 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_41 | supercontig | scaffold_41:441878..442971 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017452 | GPCR_Rhodpsn_7TM |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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