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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064253 ID=TCONS_00064253|Name=TCONS_00064253|organism=Clytia hemisphaerica|type=transcript|length=1560bp
CAAAAAGCAAAGACGCACTGTCACATTTTGGTACACCTTTTATGATTTTT
AAGGTGACAAATTATCATTTCAACCGAAGGTCGCTGAAGCAAAATCGTAC
AATGTGGTTTGGGTTTCATATTTATCTTCTCAGTTTAAATCTACTTTCAC
TTTTCCATCTTGTATGGAGTTTAAAATATGAATGCAATCCACAAGATGTG
CTCTTCACAAAATCCCGGATCGGAATTGAAGTTCTAAGCGATGAACCTCT
TTCCTTGGATGAAGAGGTTTTGGTGAATTCTACCTCAAACTGTTTCAATA
AATGTAAGAGAAAAGGCCATGAATGCAAATCAGCCACCTTTTTCGAGGTt
ctcagaggccctcgtgtgccttgaacttgtatacattattattattatta
ttattaaaacatGTCATTTGAAAAACATCAGCAGACTGGACATAGCCAGT
AAAATCAAGCTTTCACCAACAGCTCAATACTTTGAGAAACGAGACTGTGA
TGTGGATTTCGATTCCAAAATCAAGTTCATATCTTTGGTGAAGAACATAA
CTGATTGTAAAGATATCTCAAAGAAAGGTTGGAAAATGGATGGAGTTTAT
GGTATGGAGATCCCTGGTGAACCATCAATCTATCGGTCGATTCATTGCAG
AATGTCCCTTCTCGATGGTGGATGAACAGTCATCCAAAGACGCAAATACG
GTGATATCACTTTCGATAAATCGTGGAATGAGTACAAAGCTGGCTTCGGT
GATTTATCCAAAGATTTTTGGTACGGGAACGAAAAAATACACCAACTTAC
TAAACCCAACACTGATAATGAAATCATTTTGATACTTCAAAGCTCTGAAG
GTATTTTCTATTATCCATACTACAATGGATTCAAAATCGGTGACGAAGCC
AGTAAATATGAACTCAATGTTGGTGAATATGAACACAAACTTGATCCACC
GTTGCCTGCTCATCCTATTAGCGGAAGAAACAATGGTGGTGACATGATAT
ACCAGAATGGAATGAAATTCTCCACCTTTGATTCAGACAATGATGCCAAG
AATGGCGGCGCGTGCTCTGACATATTCGCTCGGGCGGGTTGGTGGTTTAA
CTTGTGCGCCTCCGCATCACTGAATGCTGAATTTCATGCAGAATTTGGTA
TGAATCACGGAatgaaatttgaacaaattacAAATGCTGGCGACGATACA
CGGCCGTTAAAGTCTACCGCTATTTTGATACGAAAACGCTAAATCCTTGT
CATGCTATCGATACACTTTTCTCGGAATCCATGAATGTCATTGTGAACCT
TGCTTTCAAATTGTTGTTGCCGAATTAATGTTTTAACGTTATCAGACATA
CCTAATATTTGCAAACGTTTGcagttttgtttcaaaattctttTGGGAAA
CGTATggacctttttataaattacgtcacgagcaacgcttacctcgcttt
aaaatattgctatggtaattttatttatttacagtaatatatttcccagg
tctatcgacctctatgaaataatcatgcttaacattttacaatttatggA
GATCTTTTTC Run BLAST on NCBI protein sequence of TCONS_00064253-protein >TCONS_00064253-protein ID=TCONS_00064253-protein|Name=TCONS_00064253-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
KSKDALSHFGTPFMIFKVTNYHFNRRSLKQNRTMWFGFHIYLLSLNLLSL
FHLVWSLKYECNPQDVLFTKSRIGIEVLSDEPLSLDEEVLVNSTSNCFNK
CKRKGHECKSATFFEVLRGPRVP Run BLAST on NCBI transcript from alignment at scaffold_41:28739..30298 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064253 ID=TCONS_00064253|Name=TCONS_00064253|organism=Clytia hemisphaerica|type=transcript|length=1560bp|location=Sequence derived from alignment at scaffold_41:28739..30298 (Clytia hemisphaerica)
GAAAAAGATCTccataaattgtaaaatgttaagcatgattatttcataga
ggtcgatagacctgggaaatatattactgtaaataaataaaattaccata
gcaatattttaaagcgaggtaagcgttgctcgtgacgtaatttataaaaa
ggtccATACGTTTCCCAaaagaattttgaaacaaaactgCAAACGTTTGC
AAATATTAGGTATGTCTGATAACGTTAAAACATTAATTCGGCAACAACAA
TTTGAAAGCAAGGTTCACAATGACATTCATGGATTCCGAGAAAAGTGTAT
CGATAGCATGACAAGGATTTAGCGTTTTCGTATCAAAATAGCGGTAGACT
TTAACGGCCGTGTATCGTCGCCAGCATTTgtaatttgttcaaatttcatT
CCGTGATTCATACCAAATTCTGCATGAAATTCAGCATTCAGTGATGCGGA
GGCGCACAAGTTAAACCACCAACCCGCCCGAGCGAATATGTCAGAGCACG
CGCCGCCATTCTTGGCATCATTGTCTGAATCAAAGGTGGAGAATTTCATT
CCATTCTGGTATATCATGTCACCACCATTGTTTCTTCCGCTAATAGGATG
AGCAGGCAACGGTGGATCAAGTTTGTGTTCATATTCACCAACATTGAGTT
CATATTTACTGGCTTCGTCACCGATTTTGAATCCATTGTAGTATGGATAA
TAGAAAATACCTTCAGAGCTTTGAAGTATCAAAATGATTTCATTATCAGT
GTTGGGTTTAGTAAGTTGGTGTATTTTTTCGTTCCCGTACCAAAAATCTT
TGGATAAATCACCGAAGCCAGCTTTGTACTCATTCCACGATTTATCGAAA
GTGATATCACCGTATTTGCGTCTTTGGATGACTGTTCATCCACCATCGAG
AAGGGACATTCTGCAATGAATCGACCGATAGATTGATGGTTCACCAGGGA
TCTCCATACCATAAACTCCATCCATTTTCCAACCTTTCTTTGAGATATCT
TTACAATCAGTTATGTTCTTCACCAAAGATATGAACTTGATTTTGGAATC
GAAATCCACATCACAGTCTCGTTTCTCAAAGTATTGAGCTGTTGGTGAAA
GCTTGATTTTACTGGCTATGTCCAGTCTGCTGATGTTTTTCAAATGACat
gttttaataataataataataataatgtatacaagttcaaggcacacgag
ggcctctgagaACCTCGAAAAAGGTGGCTGATTTGCATTCATGGCCTTTT
CTCTTACATTTATTGAAACAGTTTGAGGTAGAATTCACCAAAACCTCTTC
ATCCAAGGAAAGAGGTTCATCGCTTAGAACTTCAATTCCGATCCGGGATT
TTGTGAAGAGCACATCTTGTGGATTGCATTCATATTTTAAACTCCATACA
AGATGGAAAAGTGAAAGTAGATTTAAACTGAGAAGATAAATATGAAACCC
AAACCACATTGTACGATTTTGCTTCAGCGACCTTCGGTTGAAATGATAAT
TTGTCACCTTAAAAATCATAAAAGGTGTACCAAAATGTGACAGTGCGTCT
TTGCTTTTTG Coding sequence (CDS) from alignment at scaffold_41:28739..30298 >TCONS_00064253 ID=TCONS_00064253|Name=TCONS_00064253|organism=Clytia hemisphaerica|type=CDS|length=372bp|location=Sequence derived from alignment at scaffold_41:28739..30298 (Clytia hemisphaerica)
tcaaggcacacgagggcctctgagaACCTCGAAAAAGGTGGCTGATTTGC
ATTCATGGCCTTTTCTCTTACATTTATTGAAACAGTTTGAGGTAGAATTC
ACCAAAACCTCTTCATCCAAGGAAAGAGGTTCATCGCTTAGAACTTCAAT
TCCGATCCGGGATTTTGTGAAGAGCACATCTTGTGGATTGCATTCATATT
TTAAACTCCATACAAGATGGAAAAGTGAAAGTAGATTTAAACTGAGAAGA
TAAATATGAAACCCAAACCACATTGTACGATTTTGCTTCAGCGACCTTCG
GTTGAAATGATAATTTGTCACCTTAAAAATCATAAAAGGTGTACCAAAAT
GTGACAGTGCGTCTTTGCTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064253-exon-scaffold_41-1491911889:28739..30298 | TCONS_00064253-exon-scaffold_41-1491911889:28739..30298 | Clytia hemisphaerica | exon |
| TCONS_00064253-exon-scaffold_41-1510915933:28739..30298 | TCONS_00064253-exon-scaffold_41-1510915933:28739..30298 | Clytia hemisphaerica | exon |
| TCONS_00064253-exon-scaffold_41-1575043694:28739..30298 | TCONS_00064253-exon-scaffold_41-1575043694:28739..30298 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_41 | supercontig | scaffold_41:28739..30298 . |
Blast
BLAST of TCONS_00064253 vs. Swiss-Prot (Human)
Match: ANGL6 (Angiopoietin-related protein 6 OS=Homo sapiens GN=ANGPTL6 PE=1 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 1.473e-27 Identity = 72/238 (30.25%), Postives = 116/238 (48.74%), Query Frame = 1
Query: 538 VKNITDCKDISKKGWKMDGVYGMEIPGEPSIYRSIHCRMSLLDGG*TVIQRRKYGDITFDKSWNEYKAGFGDLSKDFWYGNEKIHQLTKPNTDNEIILILQSSEGIFYYPYYNGFKIGDEASKYELNVGEYEHKLDPPLPAHPISGRNNGGDMIYQNGMKFSTFDSDNDAKNGGACSDIFARAGWWFNLCASASLNAEFHAEFGMNHGMKFEQITNAGDDTRPLKSTAILIRKR*ILV 1251
V DC + + G + GVY + + G + S+ C L GG TVIQRR+ G + F +W YKAGFG ++W G E ++QLT D+E++++L+ G +Y+GF + E+ Y L +G+Y + G + + N FST D D D+ +G C+ ++ R GWW++ CA ++LN +H HG + G + A +RK +L+
Sbjct: 254 VGPWQDCAEARQAGHEQSGVYELRV-GRHVV--SVWCEQQLEGGGWTVIQRRQDGSVNFFTTWQHYKAGFGRPDGEYWLGLEPVYQLTS-RGDHELLVLLEDWGGRGARAHYDGFSLEPESDHYRLRLGQYHG--------------DAGDSLSWHNDKPFSTVDRDRDSYSGN-CA-LYQRGGWWYHACAHSNLNGVWH------HGGHYRSRYQDGVYWAEFRGGAYSLRKAAMLI 465
The following BLAST results are available for this feature:
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