TCONS_00064250 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064250
Unique NameTCONS_00064250
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length782

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064250 ID=TCONS_00064250|Name=TCONS_00064250|organism=Clytia hemisphaerica|type=transcript|length=782bp
ACGAAAATCAATTTCGCTCTCTTTGTGGACTTTCTACCTAAGATCCCAAA
TCGTCTCTGTTCTCCCAGGGTTTTATTCACCAGTCTTGTATCCTAATCAT
TATTTTCAGATTATTGGTCTTGATCATAGTTTACATGGTCAGCGGTATAT
TAATCAATAAATATGTTCGAAAAGTGGAAAAAGGTCATgaatttcccaac
aaaaacTTTTGGAAAGATTTTCCTGGACTCATAAAGGATGGATTTGCTTT
CACTTATCATCAAATCCGACGAAAGGATGCGTACGAATCTATATGAAAAG
GTTGAACTATTAGAAAAGgtacgaaaattttgaaatttgattaaTAATAA
TTACTAGAAACGACTTTACTGCAGGCCTGTTTAACCAGCACATTTCAGGG
CCAAGGCCATTCTGGTGCCAGGAGGGGAAATGGCAcctatcttttttttc
aaataaaaaggtggggatttttaagatttcacaATTTATACTTCAATAGC
TTTATTTCTGGACAAAATCAGACTGAAATAGGGCTATTTTAAGATCACAT
TCGCAATTTTCTACGGTTGCGCCTCTTTAGTCGTTATATTTCTGACTCCT
CTAATTTTCAAATCATGGCCTGGGCCCTGAGTTTCCTTAGATCAGGGAAA
TCTGCACATCCTCGaccaatcaattttttttgtggtCAGaaatgtactct
taggttccaaataaacgccccccccccgcttgttaatttttcgaaaattt
tccaatcccccggatcttattaggaccccccc
Run BLAST on NCBI

transcript from alignment at scaffold_41:820424..827268-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064250 ID=TCONS_00064250|Name=TCONS_00064250|organism=Clytia hemisphaerica|type=transcript|length=6845bp|location=Sequence derived from alignment at scaffold_41:820424..827268- (Clytia hemisphaerica)
ACGAAAATCAATTTCGCTCTCTTTGTGGACTTTCTACCTAAGATCCCAAA
TCGTCTCTGTTCTCCCAGGGTTTTATTCACCAGTCTTGTATCCTAATCAT
TATTTTCAGATTATTGGTCTTGATCATAGTTTACATGGTCAGCGGTATAT
TAATCAATAAATATGTTCGAAAAGTGGAAAAAGGTCATGAATTTCCCAAC
AAAAACTTTTGGAAAGATTTTCCTGGACTCATAAAGGTAAATATGTTTGC
ACCGCCCGTAACCCATTAAATTCCATTACTCCGTAACTATAAACTTTCAA
ATATTTTTTGACTTCAAATGCGCGTCCACACCCCAAACTAAGAAAACATG
CCAATCTGGATGTTAAATTTAGTGAGCACGTCCATATAGGAGTCTAGTTT
CTTCGATTTCTTGGCCGAAAATTTCCAAATGTCAAAAGTCGGGTAGTATC
CAATGATCGTTCGGCCCATCCACAATCATAGACAAAAGGTCTTTAGACTT
TTCAAAAATTCCTCAATAGTGCCAGGAAAAGTCTTTTTGACGCTTGGGAA
ATTCTCCAAATGGACCACAAGTGGTTATTTGGCAGAAAACACCTAGAAGC
TTGCTAGCAATCCTCATAATTTTAGTACTTGTGAATTTTGGACTTCCAAT
GACTGAAAATGGATGAACTTGAGCCACATAGGTCGTGGGTGCACCAGAGA
GCTTTAAACAGTTGTTTATAATTGATTAAAANTTTTGGACTTCCAATGAC
TGAAAATGGATGAACTTGAGCCACATAGGTCGTTGGTGCACCAGAGAGCT
TTAAACAGTTGTTTATAATTGATTAAAGGTTTTGTTTTGATTGAAAGGTC
TGATGATGCTGATGTAGTAAAAACAAGTGCGACAAGATTAGAAAAAGGTT
TTGAAAAAATGAAAAAACAAAGGGACTTTTACTGATACTCTTTGAATGTT
TTTATGTTTTATAATAAATAGAAAGTTTTCTATCTTATAATCAAAACATT
TGACTGTAAATTTGCTCGAAATCAACTTTTCCATTTTTTTGGTTACAAAA
GCAATAGAATGTGAGGTCACATCTCGAAACAACTTTCGATCTTTCACTTG
TTTGCAGGATATCGTTGTGTAAAAAAATAGCTTTAATTTATCTGACTCGG
AATGAAGACACTGCCTAAAATAAGCTAGAAAACCATCTCAAATATCTTCT
AATAGATGTCTTCTCGAAAAAGTTGAAGAGCAAAACTCATTGACCTTCAA
TCTTCAATCTCAGACAAAAAAAATAGCCTGAAGACTTTGCAAAAATTCAT
TTCCTTCATGTCCAGTGATTTGGCTTCTGGAATTGTCACCCAAACTATCC
AAATCCAATAAAAACAACATAGGCCCTGGTAAAAATGGGTTTTCAGAGCT
TATTTTGAAATTTTTCATGCATTTGAAAAGTCTACAACCTTTTGTCCGAG
ATTGCAGTACCATTATTTTGGTTTGTTAATCATCATTATCTACAAATATT
TTCGTGAGAAGATTCGGACTTTATGTCTTTTTTGGCTGTACGGAAATCTT
TTTGAGAAATCCTTGAATTACTATGGATAAATTTTAAAATATTTTTCGTT
CATTTTTAATAGGATGGATTTGCTTTCACTTATCATCAAATCCGACGAAA
GGATGCGTACGAATCTATATGATAAGGTTGAACTATTAGAAAAGGTACGA
AAATTTTGAAATTTGATTCATAATAATTACTAGAAACGACTTTACTGCAG
GCCTGTTTAACCAGCACATTTCAGGGCCAAGGCCATTCGGGTGCCAGGAG
GGGAAATGGCACCTATCTTTTTTTCAAATAAAAAGGTGGGGATTTTTAAG
ATTTCACAATTTATACTTCAATAGCTTTATTTCTGGACAAAATCAGACTG
AAATAGGGCTATTTTAAGATCACATTCGCAATTTTCTACGGTTGCGCCTC
TTCAGTCGTTATATTTCTGACTCCTCTAATTTTCATATCATGGCCTGGAC
CCTGAGTTTCCTTAGATCAGGGAAATCTGTACATCCTCTACGAAATCAAA
TTTTTTTGTGGTCAGAAATGTACTCTTAGGTTCNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGCGTT
TATTTGGAACCTAAGAGTATAGTAAATTTACCACCACTTTTCGCTCTAGA
CCCCGACTCTACAATCAGTGCCATAACATATTGGCACTTTTGGCTAATTT
ACCATTTTTCGAAAATTGAAGTTCGAACGAGAATGTCAATTTTGGGCCTT
TAACTTGATTGCAACGATTATTTCGATCTGGGAGGGATGTATTGGTTTCT
AGGCTAGATTTCAAGCCCTACTGGACTATTTTTGAACTTTTGGATCCTGG
ACTTATATTCATTACGTAATGTTTTATACGGAATCACGCAAAATAGCCCA
GAGGTTTTCCACTAGTATTATTCAAATTCAAATTGACTGGCAAACACCCA
GTCTTTCCTGGTTGAGTCAATCAAACCCAAAACCATTTATACCAGTCTAA
AGCTCTCAAAATGCTATAGAGGACTTTTGAGTGGAGATTAACCTATTTCA
AGAAAATTAACGCCAACTTTTCGTTTTAACGTCTTTTCCAGTCGATGATT
TACTTAAGGAAACCCTCTTCCAAAAAACTTTTTAAATACTTCATTCTTTG
AAATAATGGACCAGGTTTGACTGCGTCGCATAAAAAATGCCACGGATCCT
AAAGGTTTGTCCCTTACTAAATGCATTTAATTATTGACATCATTATCTTT
TGCTCCTTACAACAACAGAGTGACGAAACTGATGGAAGTGAAACCGTGTT
AAATCTTGGTGTATATCTCTCCTTATTGGATCGTGTCATTCGTAAATATA
AAGATCCATTACAATTTACCATCAAAGACGAAGAATATTGTTCAGTGTTA
CGTTTGGTGGCCACCAAGAGATGTTTAAAGAAAGAAACGACTGAAGAATG
TTATGAAAGATTACTTAAAGATAGTGAAGAATTTGAGAAAATATACCATG
AAAGAAAAGGTAAAATACAGCGTGTCCCAAAATGTTTTTAGATAAAGTAA
TATGCCATATATACTTTAAAGATTGAAAATATTCCAATTTCAAAAACCTA
TTCAATCATCTTAGGAAATGAATATCTATTGATTCAACATCTAATTGTAA
TCTTACTTCCATCGCGTTCTAACCCCAGTTACTGTGAGATGATGAGTTTT
CAGCACTTTACATACTTTACAGATTTGTTCACTCTTTTTTGGGACACACT
CAAACAAGGCTTTGAATATAATATACGCTCTAAAGATCTGATGATGATGA
AACAAATGCTGAAAAAGAGAACATCTTTAGGGTCTTGACGTTCTTGTAAA
AGTCATAAACGTATATTATATTTTTCAGTTCTTTCAGAGGTTTTGAAAAA
CGAAGATTTTTGGGGCACACGACAGCAACTATTATGTGGTAAAGTCATTT
CAGATTGGATTGACACAGATCATTTACCCATCGATCCTATATTCGGTGCT
TTGTTATGTCCTTGTGGAGGTATTTTTCAAAACTTTTTGGATGGATCGTT
CATTTACAAATCTGAACAGAGTCCAAATAACTTAAAACTTGTGCGGAATT
TTTTGAAAGATTCTTAAGATATGTAACCCTTATTATATATATAAGTCCTA
ATAAGGACGAAATGCATATGCTGCTTTGCCACCCAAATCACCCAAATAAT
TTAATAAGGGAATTTCCCTGCTGTCCACTAATTTTCTCAGTTGGAACCAC
AAGTGCTTTTGTGGTTTAGCATGGTGGCTAAATCGACCTAGCCAGCCAGG
GTGCAGCATGTAGTGCTGACGAGTCCTAATAAGGAAATGCATATGCTGCT
CTGTCACCCAAATCTCCTGAGTGAATATAGTTGGACAGAAATTCTTCTTT
CTTCACACCATATGTATTCCCCAAATGGACCACAAGTGGTTATTTGGCAG
AAAACACCTAGAAGCTTGCTAGCAATCCTCATAATTTTAGTCCTTGTGAA
TTTTGGACTTCCAATGACTGAAAATGGATGAACTTGAGCCACATAGGTCG
TTGGTGCACCAGAGAGCTTTAAACAGTTGTTTATAATTGATTAAAGGTTT
TGTTTTGATTGAAAGGTCTGATGATGCTGATGTAGTAAAAACAAGTGCGA
CAAGATTAGAAAAAGGTTTTGAAAAAATGAAAAAACAAAGGGACTTTTAC
CAGCTTTTACTGATACTCTTTGAATGTTTTTATGTTTTATAATAAATAGA
AAGTTTTCTATCTTATAATCAAAACATTCGACTGTAAATTTGCTCGAAAT
CAACTTTGCCATTCTTTTGGTTACAAAAGCAATAGAATGTGAGGTCACAT
CTCGAAACAACTTTCGATCTTTCACTTGTTTGCAAGATATCGTTGTGTAA
AAAAATAGCTTTAATTTATCTGACTCAGAATGAAGACACTGCCTAAAATA
AGCTAGAAAACCATCTCAAATATCTTCTAATAGATGTCTTCTCGAAAAAG
TTGAAGAGCAAAACTCATTGAACCTTCAGTCTTCAATCTCAGACAAAAAA
AATAGCCTGAAGACTTTGCAAAAATTCATTTCCTTCAATGTCCAGTGATT
TGGCTTCTGGAATTGTCACCCAAACTCTCCAAATCCAATAAAAACAACAT
AGGCCCTGGTAAAAATGGGTTTTCAGAGCTTATTTTGAAATTTTTCATGC
ATTTGAAAAGTTTTCAACCTTTTGTCCGAGATTGCAGTAGCATTATTTTG
GTTTGTTAATCATCATTATCTACAAATATTTTCGTGAGAAGATTCGGACT
TTATGGACAATGTCTTTTTTGGCTGTACGGAAATCTTTTTGAGAAATCCT
TGAATTACTATGGATAAATTTTAAAATATTTTTCGTTCATTTTTAATAGG
ATGGATTTGCTTTCACTTATCATCAAATCCGACGAAAGGATGCGTACGAA
TCTATATGAAAAGGTTGAACTATTAGAAAAGGTACGAAAATTTTGAAATT
TGATTAATAATAATTACTAGAAACGACTTTACTGCAGGCCTGTTTAACCA
GCACATTTCAGGGCCAAGGCCATTCTGGTGCCAGGAGGGGAAATGGCACC
TATCTTTTTTTTCAAATAAAAAGGTGGGGATTTTTAAGATTTCACAATTT
ATACTTCAATAGCTTTATTTCTGGACAAAATCAGACTGAAATAGGGCTAT
TTTAAGATCACATTCGCAATTTTCTACGGTTGCGCCTCTTTAGTCGTTAT
ATTTCTGACTCCTCTAATTTTCAAATCATGGCCTGGGCCCTGAGTTTCCT
TAGATCAGGGAAATCTGCACATCCTCGACCAATCAATTTTTTTTGTGGTC
AGAAATGTACTCTTAGGTTCCAAATAAACGCCCCCCCCCCGCTTGTTAAT
TTTTCGAAAATTTTCCAATCCCCCGGATCTTATTAGGACCCCCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040271XLOC_040271Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064250-exon-scaffold_41-1575043694:827033..827268TCONS_00064250-exon-scaffold_41-1575043694:827033..827268Clytia hemisphaericaexon
TCONS_00064250-exon-scaffold_41-1575043694:820424..820969TCONS_00064250-exon-scaffold_41-1575043694:820424..820969Clytia hemisphaericaexon
TCONS_00064250-exon-scaffold_41-1510915933:827033..827268TCONS_00064250-exon-scaffold_41-1510915933:827033..827268Clytia hemisphaericaexon
TCONS_00064250-exon-scaffold_41-1510915933:820424..820969TCONS_00064250-exon-scaffold_41-1510915933:820424..820969Clytia hemisphaericaexon
TCONS_00064250-exon-scaffold_41-1491911889:827033..827268TCONS_00064250-exon-scaffold_41-1491911889:827033..827268Clytia hemisphaericaexon
TCONS_00064250-exon-scaffold_41-1491911889:820424..820969TCONS_00064250-exon-scaffold_41-1491911889:820424..820969Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_41supercontigscaffold_41:820424..827268 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.95656e-06	0	0	0	0.436426	0	1.26322	0.689266	0	0.461853	0	0.247634	0	0	0	0	0	0	0	0	0	0	0.510649	0	1.01213	1.9262	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064250 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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