TCONS_00064233 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064233
Unique NameTCONS_00064233
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3288

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064233 ID=TCONS_00064233|Name=TCONS_00064233|organism=Clytia hemisphaerica|type=transcript|length=3288bp
GTTTGTTTATGAAAATCAGTAGCTAGGCGAATTTCCGGTAGGCAGGACAT
AAGACAATCCCCGGAGCCAATCAATTGTCATTCTTTTTACCTCTGTTATG
TTTTCCTTCTCAAGTGATTCGCAATGGAAAACGAGGAAACCGGACAACAA
TATCTAATAATTTAGGAAGTTTATAAGATTTGTCGTCTGGGTAGAGTTAT
TCGTTTATATACCAGAAAACGATATattgtactttttatttttgagacAT
GGCAGAGTGGTACATGGTAGAAGAGAGATTTATTCGTGGTTGCAAAGAAT
TGCAAAATGTACAAAACCGAGTAGCGTCgaagaaaagttttaaattagta
gCACACATACGAAGATATAAAAGAAAGAACAGAGAAGCTCGCTACATGTT
TAAACATATAACAGCGAGAAACTGGCGTGTTATCAAACACTCTCCTACAC
AAAAGAAATCTATTGTTGAGGATGTAAATCAATAACACACAGAACACACA
TTCCTACGTCATAATCtctttgttatgatttgatatGTAATAATGATGTG
ATGTTAGACGgcaaaagagaaagaaaaaaccttCTCTCTAGAGACTACGG
TTCGGTGCTCATGACAAAAtagaataatatttttttttgttgcgaAAGAa
agcttcttttgaaaattgttgattttCAGTTTGGCTTTCGTctctttcta
attttttatctttgtgtaTTTCTGGACACCAAAGAAAAACAGAACAggtc
tttcttttaaaaagttcgtgttgaatgttgaaaaaaaaactttcagaaag
aGAGAAGGGAGAGAGAGAAAATTAACGAATCAGCTGCGCGCAAAACAAGC
GCGTGCTTTTCTCTTTGACCATATATGGTCAACAAAGAGAATTAATATCC
CGACATGCTTTGCGTTTCAGAAAATATGAAGTTTTACTGACAATCCGCTT
TAGATGTTGTGAACACAAAGAAAAGAACACTGAAAAAGAATTACTGAGAA
GGACGAAGTGGTATTTTCAAAAGGATTTGAACATTTGAATGTAGAAGGCT
TTACAagATGAAACAATAAAGAACATACAGACACGATAACAATGTTATCA
GAAGATACCAAAACAAATtcagagaactttttaaaaaacggTGAAGTTAA
AGAAATGAAGGATATCAAAGATGACCCATCAGCACTTCTTTCCTCTGTCG
attcaaaaaatctgaaaatcgaatCACTCAAAGAGCTATGTTCGACTGAA
ATGATGAAAGCTCcgaagaaagaagagaaagttGAATCTAAAGACATGGC
TGTCCAAACAGAAGATTGCTTGTGGCTCCAGGAACTTATCCAGAAAGTAG
TTACTGTACGCGTCAAAGCATACCAGAAAGCTGCAGAAAAATCTGAACGA
ATGGACGAAAAATTATCTCCTGTTTTGAAAAGGCTGAAGGAAGAAAATCG
GGATCTTCGAGAAAAAGCATCCGTTTTGAAACAGAAACTTCAAGCCATTG
AAAGATACCAAAATTCTGCTAAAAAGCGCCCATCCAGTAACCCGCAACCT
GTAGAAACTCCACCTAAACGCATTTGTACTACAACAAAGAGTCCTGTACC
AATAAATACGACGCCGCCAGCACAATCAAACATCGGAAACATCAATAAAG
TTCCAGTCACGTCACCTCAACCGGTTTCTTTCGCGTCTCCGGTGAGGTCT
GTTTATATTCCACCTGGACCAATTCAACACGCTCCTCAACAATTCTACCA
GATCCTTCCTAATGGGCAACGTATGTTATTACAATCGTTACCAACCCCGA
CAAACGATCCAGGATTTGTTATGATTGACCCGAACTCAAATAACGGACAT
TATAATATTGGAACTCAAGTAGTGGTCGCTAATCAAGGTCTACGCATGGC
GTCTTCCCATCCAAAGGACAATCGTGTGCAACAAATCGCTCAAGTCAATG
GGAAAAATTTCCCAGGAACATTAAACCCACTTCGACCGCCTATGAGTAGA
TTTCAAACGAACAATGTTCGTCTTCCTGTTAGTTGGTCAGCTCCGCCACA
ACAAGTCCGCCCTCAAATGATGGTCGCCCAAAGACAACCAGTTCCGATAC
AGCAACCACAGAAAGTACAAAAACCCGCCCTTCAGTCACTGCCAACTACA
AAAACTCCACCCCCTAAACCTCCCAATTCATCTGAAGCTCATATAGCACT
ACCATTTAACCCGTTACCAAAACTAAAAGCCAGTATTTCTGCTTCAGGAA
GTGGCATCATATTAACATGGGATTATGAAAAATCGGGTGAAAACCCAGAT
AAATATAAAGTTGAGTGTTATCAGCTGTTTGCACATCAGGCAAAAGGTAA
TATACGGCCGCCCGGCCCCAATGAGTCAAGACCGTGgaagaaaattggaa
atgtCAATGCTTTACCATTACCTATGGCATGCACTTTGACGCAATTTGCA
ACAGGTAATGTTTATTATTTTGCCGTTGTTGCAGTTGACATACATGGACG
TGAAGGAGAAATGTCTAATCCTTGCACTATAAGATTAAATCTAAATTCGT
AGTTTTGAAGTATTTAACCAAATGTTGTTGAtatgtaccttaaaggaaga
aattctggcggaaagaaaatttggcgaatttggcagattcggccagaatc
cgccaaattaagttcccgccaaaatttatttttttccgcaatccgccaaa
ttaaattcccgccaaattaaactttttgaaaatatgatctcttttaaggt
gtttttgcattttttttgctgtttttacgccattttaaggataacttttt
cagcaaacgccaaatttagttttttcgtcaatccgccaaattaaattccc
tctaaaaaactttttcggccatccgccaaattaaattcccgccaaaattt
cttcctttaaggtaggtAATTGTTGATTGTAAAACATTTGAAgagttttg
aattatttttcacttATACAACAAGAACAGCTCAAATATTACAAAATTGG
TTATGTTTGAGAAAATCTTCTTCGTCGTCACATCAAACCgattattttct
tttgaaaaaggaatttcttttgttttcctatGAATTTTCTGTTCCACTGA
AAAAGAGGaatcctttttttaaagaaaggcCACTTTGTCATTATATCTCT
GTAATTATTCCTAAAACTATTTATTATTTGtgtataatatttttaaaaac
atttttgcgtTCCCTTTTTTTTTACTCCATAGTGCATGCCATCATTAGTA
TATTGTTAATATTGTTATGGAAAGTTAAAATATATTTA
Run BLAST on NCBI

transcript from alignment at scaffold_41:584321..590401-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064233 ID=TCONS_00064233|Name=TCONS_00064233|organism=Clytia hemisphaerica|type=transcript|length=6081bp|location=Sequence derived from alignment at scaffold_41:584321..590401- (Clytia hemisphaerica)
GTTTGTTTATGAAAATCAGTAGCTAGGCGAATTTCCGGTAGGCAGGACAT
AAGACAATCCCCGGAGCCAATCAATTGTCATTCTTTTTACCTCTGTTATG
TTTTCCTTCTCAAGTGATTCGCAATGGAAAACGAGGAAACCGGACAACAA
TATCTAATAATTTAGGAAGTTTATAAGATTTGTCGTCTGGGTAGAGTTAT
TCGTTTATATACCAGAAAACGATATATTGTACTTTTTATTTTTGAGACAT
GGCAGAGTGGTACATGGTAGAAGAGAGATTTATTCGTGGTTGCAAAGAAT
TGCAAAATGTACAAAACCGAGTAGCGTCGAAGAAAAGTTTTAAATTAGTA
GCACACATACGAAGATATAAAAGAAAGAACAGAGAAGCTCGCTACATGTT
TAAACATATAACAGCGAGAAACTGGCGTGTTATCAAACACTCTCCTACAC
AAAAGAAATCTATTGTTGAGGATGTAAATCAATAACACACAGAACACACA
TTCCTACGTCATAATCTCTTTGTTATGATTTGATATGTAATAATGATGTG
ATGTTAGACGGCAAAAGAGAAAGAAAAAACCTTCTCTCTAGAGACTACGG
TTCGGTGCTCATGACAAAATAGAATAATATTTTTTTTTGTTGCGAAAGAA
AGCTTCTTTTGAAAATTGTTGATTTTCAGTTTGGCTTTCGTCTCTTTCTA
ATTTTTTATCTTTGTGTATTTCTGGACACCAAAGAAAAACAGAACAGGTC
TTTCTTTTAAAAAGTTCGTGTTGAATGTTGAAAAAAAAACTTTCAGAAAG
AGAGAAGGGAGAGAGAGAAAATTAACGAATCAGCTGCGCGCAAAACAAGC
GCGTGCTTTTCTCTTTGACCATATATGGTCAACAAAGAGAATTAATATCC
CGACATGCTTTGCGTTTCAGAAAATATGAAGTTTTACTGACAATCCGCTT
TAGATGTTGTGAACACAAAGAAAAGAACACTGAAAAAGAATTACTGAGAA
GGACGAAGTGGTATTTTCAAAAGGATTTGAACATTTGAATGTAGAAGGCT
TTACAGTAGGTCTTTTTGAACGGGATTTTTTATCTCTTAGAAAAAACTAA
TTTTCACAGATTTTCGAGGGTAAATTTGTTTTTTACTATGTATAAATGTG
AATGAAGAAATTCAAAGAATGTATTTNTATGATGTGATGTTAGACGGCAA
AAGAGAAAGAAAAAACCTTCTCTCTAGAGACTACGGTTCGGTGCTCATGA
CAAAATAGAATAGAATTTTTTTTTTGTTGCGAAAGAAAGCTTCTTTTGAA
AATTGTTGATTTTCAGTTTGGCTTTCGTCTCTTTCTAATTTTTTATCTTT
GTGTATTTCTGGACACCAAAGAAAAACAGAACAGGTCTTTCTTTTAAAAA
GTTCGTGTTGAATGTTGAAAAAAAAACTTTCAGAAAGAGAGAAGGGAGAG
AGAGAAAATTAACGAATCAGCTGCGCGCAAAACAAGCGCGTGCTTTTCTC
TTTGACCATATATGGTCAACAAAGAGAATTAATATCCCGACATGCTTTGC
GTTTCAGAAAATATGAAGTTTTACTGACAATCCGCTTTAGATGTTGTGAA
CACAAAGAAAAGAACACTGAAAAAGAATTACTGAGAAGGACGAAGTGGTA
TTTTCAAAAGGATTTGAACATTTGAATGTAGAAGGCTTTACAGTGGGTCT
TTTTGAACGGGATTTTTTATCTCTTAGTCTTAGAAAAAACTAATTTTCAC
AGATTTTCGAGGGTAAATTTGTTTTTTACTATGTATAAATGTGAATGAAG
AAATTCAAAGAATGTATTTGTGACTTTCTTTATTATAACTTTCAACTGTA
GGAATAATGACAGACAGTCTCGTGCAAACAAAACTGCAAATGAGATCCTC
GTTTCTGAAAAAGTATTCGAATGTTTTAACACACTCAACGTTCGAATTTG
ATTATTCAGAATATGAGTTCGAACAAAAAGCATGAAGAATTATTTTAAGA
TTTTGAGAGGTGATCACGTGTGCAATTTGGGAAGATGTTTGCGGGTTGTT
TAAGAAAGTACCAATAAATAAATCCGGATTAAAATCCTGACTACATTGGC
TGAACAAGGTGGGTTAGCTGAAACTTGAATTAGAAGATTGTCTGAAACCG
ACAAAGAATATCTCTCCATTGTTTTCTCCTTTCGTATTGGAATAACTTAG
CGATTCTTGAGTACATCCAGGATTGCAAATACTATAAATGAGAAAAGAGG
CCTGGAAAAGAAAGAGCATCGTCCGAGCCACGTCCGAGCCACGTCCGAGC
CACGTGCACATAATCAATTTTATGAATATACTCTGTCTCAACCCGATCTC
GACAGGGAGCAAGCAAGACCGATGATAATTCAACAACTCATTAGCTAAAT
TTAGCACCTAATGTCGTAACGTATCTCGACTACTATTTGCTAACATAGCA
TTGCATTTTTTTAATAAAGGAAAAGAACAAATTTTCCCTCTTCTGCGCCT
CCTCTCCTTCTCCTACACACATTTTGAGAAATTATTTTATTAATTCTGAT
TTGTCAGCATTAGAGGCGCGGCTCTTTCTATGCCATAAGAATAACTCCAG
CAAAGCGCCATAAGACGAGATACAGTAACACAGTTATCTTCATTCATAAA
TATTTTTAATTAACATCCTCAAATTACCTTCAATCGAGATTTCCTTTGAC
AAAAGTTACCGTAATTGCTCCGGGAATCAATGAAACTTTTTTTCCCGCGT
TTATTATATAATTTGTTATGCACAAGCTATAATGATTGGTTTATTGTTTG
TGCGCGCGTAAACATTTGAATTTAATTTCAATATCCAGGCAGGTATATTT
GTTTGCCTCAAGAAGCATTCCTTATTAACAGTTCTCATTTAATGCAATGG
AGTCTCGTTAATTCCAACACGCTTAGGGACCACAAACTTGTTCGAGTTAA
GGAAATTTCGAGTTATGGGGTAAGGTTTAAGAGTTTTTGTTAACTGAAGG
GACCATAAAACTTGTTCGAGTTAAGGAGATATTCGATTTATGGAGGTTTT
AGTTAAAGAGACTTTACTGATGTGTACTGTAACTATAAAAATGATTGATA
GTCTGAATCGCACAATCGATCGCAGGTAGTGTGTCTTTGACGAGTAACAA
GAATTCGTTAGTGGATGACAGCAGCCTAAATGGTTACTTTCTGAACTTGG
ACAAATTATCTCGTCGAATAATTTATTTTTTACGGATGACAAACAATTCC
GCGTGAAATCCGCGAAATTTAATCCCCGTGAAAATTAATCCCATTATAAA
GTAATGTCTTTTGGGACATCGAAATGTCGTGAAAACTGTCATCATTTTAG
ATTTTCTATGCCACTTTTGTGTGACAATATTTTTCCTTTTACACCTTGCT
TATAACAAAAACATCATCTTTGTTGATTGACATTACGTAATGAGGTCAAG
TTTTTTTTTCTTAGAGATGAAACAATAAAGAACATACAGACACGATAACA
ATGTTATCAGAAGATACCAAAACAAATTCAGAGAACTTTTTAAAAAACGG
TGAAGTTAAAGAAATGAAGGATATCAAAGATGACCCATCAGCACTTCTTT
CCTCTGTCGATTCAAAAAATCTGAAAATCGAATCACTCAAAGAGCTATGT
TCGACTGAAATGATGAAAGCTCCGAAGAAAGAAGAGAAAGTTGAATCTAA
AGACATGGCTGTCCAAACAGAAGATTGCTTGTGGCTCCAGGTAATTAACG
TTTGAATGGAATTAGCCTTGAAATTATATTACGTTTTTATTTTACGTTTT
CCGCCCTGTATCGTTTGCTTTTTATTCTAAATGAAACACTGCATATAACT
ACTAAGGGTAGTTAAACATTTTACTGTTTTATATGGTACCAATTGAATAG
GGAAAATAACAAATCAATAAGTCGTTATTCCATCGTTTAATTACGAACAA
TATATAATTTAGAAACTTTTTTCTTAAACTTCAGGAACTTATCCAGAAAG
TAGTTACTGTACGCGTCAAAGCATACCAGAAAGCTGCAGAAAAATCTGAA
CGAATGGACGAAAAATTATCTCCTGTTTTGAAAAGGCTGAAGGAAGAAAA
TCGGGATCTTCGAGAAAAAGCATCCGTTTTGAAACAGAAACTTCAAGCCA
TTGAAAGATACCAAAATTCTGCTAAAAAGGTAGGTTTTAAGACACGATGG
TGTTCGTAAGAACACTTAATTTACATTGCATTAATGTCTAGTTCTTTCTA
AAGAAAATTGCTAATGTGTTTGGAGGTATCAGTCTTATAAGGAAATCTTT
TGTATTACATTTCAATCAGCGCCCATCCAGTAACCCGCAACCTGTAGAAA
CTCCACCTAAACGCATTTGTACTACAACAAAGAGTCCTGTACCAATAAAT
ACGACGCCGCCAGCACAATCAAACATCGGAAACATCAATAAAGTTCCAGT
CACGTCACCTCAACCGGTTTCTTTCGCGTCTCCGGTGAGGTCTGTTTATA
TTCCACCTGGACCAATTCAACACGCTCCTCAACAATTCTACCAGATCCTT
CCTAATGGGCAACGTATGTTATTACAATCGTTACCAACCCCGACAAACGA
TCCAGGATTTGTTATGATTGACCCGAACTCAAATAACGGACATTATAATA
TTGGAACTCAAGTAGTGGTCGCTAATCAAGGTCTACGCATGGCGTCTTCC
CATCCAAAGGACAATCGTGTGCAACAAATCGCTCAAGTCAATGGGAAAAA
TTTCCCAGGAACATTAAACCCACTTCGACCGCCTATGAGTAGATTTCAAA
CGAACAATGTTCGTCTTCCTGTTAGTTGGTCAGCTCCGCCACAACAAGTC
CGCCCTCAAATGATGGTCGCCCAAAGACAACCAGTTCCGATACAGCAACC
ACAGAAAGTACAAAAACCCGCCCTTCAGTCACTGCCAACTACAAAAACTC
CACCCCCTAAACCTCCCAATTCATCTGAAGCTCATATAGCACTACCATTT
AACCCGTTACCAAAACTAAAAGCCAGTATTTCTGCTTCAGGAAGTGGCAT
CATATTAACATGGGATTATGAAAAATCGGGTGAAAACCCAGATAAATATA
AAGTTGAGTGTTATCAGCTGTTTGCACATCAGGCAAAAGGTAATATACGG
CCGCCCGGCCCCAATGAGTCAAGACCGTGGAAGAAAATTGGAAATGTCAA
TGCTTTACCATTACCTATGGCATGCACTTTGACGCAATTTGCAACAGGTA
ATGTTTATTATTTTGCCGTTGTTGCAGTTGACATACATGGACGTGAAGGA
GAAATGTCTAATCCTTGCACTATAAGATTAAATCTAAATTCGTAGTTTTG
AAGTATTTAACCAAATGTTGTTGATATGTACCTTAAAGGAAGAAATTCTG
GCGGAAAGAAAATTTGGCGAATTTGGCAGATTCGGCCAGAATCCGCCAAA
TTAAGTTCCCGCCAAAATTTATTTTTTTCCGCAATCCGCCAAATTAAATT
CCCGCCAAATTAAACTTTTTGAAAATATGATCTCTTTTAAGGTGTTTTTG
CATTTTTTTTGCTGTTTTTACGCCATTTTAAGGATAACTTTTTCAGCAAA
CGCCAAATTTAGTTTTTTCGTCAATCCGCCAAATTAAATTCCCTCTAAAA
AACTTTTTCGGCCATCCGCCAAATTAAATTCCCGCCAAAATTTCTTCCTT
TAAGGTAGGTAATTGTTGATTGTAAAACATTTGAAGAGTTTTGAATTATT
TTTCACTTATACAACAAGAACAGCTCAAATATTACAAAATTGGTTATGTT
TGAGAAAATCTTCTTCGTCGTCACATCAAACCGATTATTTTCTTTTGAAA
AAGGAATTTCTTTTGTTTTCCTATGAATTTTCTGTTCCACTGAAAAAGAG
GAATCCTTTTTTTAAAGAAAGGCCACTTTGTCATTATATCTCTGTAATTA
TTCCTAAAACTATTTATTATTTGTGTATAATATTTTTAAAAACATTTTTG
CGTTCCCTTTTTTTTTACTCCATAGTGCATGCCATCATTAGTATATTGTT
AATATTGTTATGGAAAGTTAAAATATATTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040264XLOC_040264Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064233-exon-scaffold_41-1575043694:589347..590401TCONS_00064233-exon-scaffold_41-1575043694:589347..590401Clytia hemisphaericaexon
TCONS_00064233-exon-scaffold_41-1575043694:586662..586937TCONS_00064233-exon-scaffold_41-1575043694:586662..586937Clytia hemisphaericaexon
TCONS_00064233-exon-scaffold_41-1575043694:586223..586417TCONS_00064233-exon-scaffold_41-1575043694:586223..586417Clytia hemisphaericaexon
TCONS_00064233-exon-scaffold_41-1575043694:584321..586082TCONS_00064233-exon-scaffold_41-1575043694:584321..586082Clytia hemisphaericaexon
TCONS_00064233-exon-scaffold_41-1510915933:589347..590401TCONS_00064233-exon-scaffold_41-1510915933:589347..590401Clytia hemisphaericaexon
TCONS_00064233-exon-scaffold_41-1510915933:586662..586937TCONS_00064233-exon-scaffold_41-1510915933:586662..586937Clytia hemisphaericaexon
TCONS_00064233-exon-scaffold_41-1510915933:586223..586417TCONS_00064233-exon-scaffold_41-1510915933:586223..586417Clytia hemisphaericaexon
TCONS_00064233-exon-scaffold_41-1510915933:584321..586082TCONS_00064233-exon-scaffold_41-1510915933:584321..586082Clytia hemisphaericaexon
TCONS_00064233-exon-scaffold_41-1491911889:589347..590401TCONS_00064233-exon-scaffold_41-1491911889:589347..590401Clytia hemisphaericaexon
TCONS_00064233-exon-scaffold_41-1491911889:586662..586937TCONS_00064233-exon-scaffold_41-1491911889:586662..586937Clytia hemisphaericaexon
TCONS_00064233-exon-scaffold_41-1491911889:586223..586417TCONS_00064233-exon-scaffold_41-1491911889:586223..586417Clytia hemisphaericaexon
TCONS_00064233-exon-scaffold_41-1491911889:584321..586082TCONS_00064233-exon-scaffold_41-1491911889:584321..586082Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_41supercontigscaffold_41:584321..590401 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.217922	0.127505	0.148046	0.289679	0.0587761	0.0928913	0.0560347	0.262295	0.110183	0.0454933	0	0.029027	0	0.150515	0	0.265591	0.130875	0.30182	0	0.0484823	0.463539	0.308316	0.149919	0.0454328	3.74358	2.83989	0.0597629	0.127561	0.0483753	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064233 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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