TCONS_00064220 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00064220
Unique Name	TCONS_00064220
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3177

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_41:468622..481164-

transcript sequence

>TCONS_00064220 ID=TCONS_00064220|Name=TCONS_00064220|organism=Clytia hemisphaerica|type=transcript|length=3177bp
AAGAAACTcatacaaaaaagaaataatataaaacaaaaacttACAAGCAA
GTTGCAATGCTTTTGCCATCCCTCCTGACCACTTTCATCGTTATTTTGAC
GACGACATTCAGAAGACCAGTGAATACTTTTAACGTCGAAACAGAACGAC
TGGTTAACGAGTTTACCATCTCACAGAAACAATCGCTCTTCGGATACAGT
GTGGCTCTACAAAAAGAAGGAAATTTGTTGGTTGGTGCGCCATTAGCTTT
GAATTACGGTGGCAATAAAACAGGAGCGATTTATTCATGCGGTGGCAAGA
ACAATAATAACTGTGTAGTCATGGAATCCTCAGGTGTAAAGAATCAGTTC
CTGGGTGTGACCGTGACATCACTTAATGACCACACCTTTTTCGGTTCACC
GCGTTGGAACAAAGAAGGATCACAAGAGACCATCGGGCGAATCATTCTAG
TGGAAAAGGATAAAATTGTGTTAGAAAAAGTCCCCTGTGGCACTTtACCG
ACTACTCACATTGGGTATGGATATTGCCAATCAGGATTCAGCTCCAATGG
TCTCCTAGACAACGAGAAGCCGTTATTTGTATACGGGACACCCGGTGCGT
TGCGGTTCTCCGGCGCTCTTTTCGCCATTAATGACCAACACAAGACTGTC
ACCACTTTGAAAAATCGAGATAGTTTGAAATCATCGTCTTACATGGGTTA
TTCATCAGCAATTGGAAAGATTTCAGATTCTAATGAAGAAGGTTATATAG
CAGATGTAGTTGGTGGTGCGCCAAGAGCCAATAACATGACCGGTATGGTT
CTCATTTACAAATTGACCGATACAGGATCGTCAGTCTTGGAAAAATTTCA
GGCGCCCGGCGAAAAGGTGGGCACATATTTTGGAGCAGCAGTTTGTGCGG
TCGATCTGGACAATGATGGCAAAGATGATTTGGTGGTTGGAGCACCGCAA
TTCGCAAAAATCATCGACGAAGGACGAGTTTATGTTTATATGAACCGAAA
GGGATACAGATTCACTGGATTCGATCAAACTTCAGTTTTGGAAGGAGATA
ACCAACAAGGAGCACGTTTTGGAAGTTCAATTGCAAACATTGGTGATATT
AATAAAGATGGTTTCCAAGACATCGCCATCGGAGCACCATACGGAGGGGT
AGACGGTAAAGGCATGGTTTACATTTACAACGGTGGACAAAATGGATTAC
GTGTAAACCAACCTCAAAGAATTGCAGCCAGTGATGTTTCAAATACACCA
CCTCAAGGATTTGGGATCTCCCTGGCTGGTGGAGTTGATATCGATGGTAA
TGGATACACAGATCTTGCAATTGGTGCGTTCAAGAGCTCGCAAGCATATA
CTCTGAAaacacGGCCAGTGATTAATCTAGAGACAACGTTATCGACCAAC
TTGCGTGCCGTACCAAGTCAAATCAATGAACAATACAGATGCACCAAAGC
TGGATATACTTCCTTCAACTGCATTGAATTATACATCGACCTCAAATACA
CACAAAAATCAGCTTCACAATATATTGATATTTCATACACGATTGATTTG
GATGtcgaaaagcttgacaaaagaGCAGTTGCTATAGAAACTGGACGTAC
ACAGATCAAAGGTGTAGCAAAATTACAACTCAATGTTGATAAGAGAATCA
CTCAAGTCATTGCTGTATCTGTATCTCAAGACTTGTTAACAGCCATCGAG
TTTGTCAGTCGTTACCAATTACAAGAGGACGCAAGCACATGTATCAACAC
ACCTTGTCCGATTTTAGATCAATACGGAAGCTCCGTAGACAAACACCTTG
TTCCGTATTTCAAAGAATGTGCGTCGGAAACAGTGTGTAGACCGGATCTC
ATCTTGACCAGCGCTCTGGCTTATCCAAGGAACACAGGGTCAACCAAGAT
AACATACGGTGTAGTTGAGCGAGTAGATGTATTGGTGATGGTGGAGAATG
GTGGTGAAAATGCATACCAGTCCTCCATGACAATGAAATATCACAGTGAT
CTTCAAGTTATTGGTGTGGACATTGAAGAGAAGACAACCTTATGGAAGAC
AAAGCTCTTGGATTCATCAACTCGTCAACTTGAATTCATTCTTGGCAACC
CTGTCCGAACTAATTCAAAGTTACTTGTACGAGCAAGATTCGCTGTTTCA
ACAAAGCAAAGACCAACAGCCTCAAAATATGTGTTTGAAATGGGAGCCAC
AGCGTTTGGAGAAGAAATGAACAAGAAAGACAATAAAGCAATTGAAGAAG
TCGATGTCTCTGTACAAACATGCATTGACGTTATACCTGTAGCGAGACCA
TCAGAAGTCTTATACCAACTAGATACCGCCAAACATCCGCCTCCTTCACC
CAAAGAAACGCCCATCAATCAAACTGTGACTACAGAAGTTGTTGGTAGTA
AAGTCATCTATTCATTTACTGTCAAGAACACTGGTTCGATGCCGATGCCA
AAGATGGCAGCCCATATTCGAGTTCCCGTGCAAAAGAATGGAGAAGATAT
GGTCTACGTTGTCCATCTATCGgtcgATGGATCTGCGTGTCTGGAAGAAT
TTAACGAGCTCGGATATAGACTTGAAGACGGTATAGAGGACGAGATTGAG
ACGGAGATCACTCAATCAACCATCTCAAAGATCGACGCGAatgtcaacaa
caacaaaaagaagAGAAGACGTGTCACAAGAGAAACACACTCTACTGAAG
GCGAGtACTGCAAGGAAGGCTGTAAGACGTACACATGTCACATTAACAGT
ATCGAATCGAATAAACGAGTTATCATCACCATGGTTACACGGTTGTGGGA
TTACAATCTACCAAAGATCGACCCGAAAGAAATTAAGATGGAAATCAGTA
CAAATTTTGTTGGTCCACAGAAAGATATGTTTGAGCAGAAAATTGGATGT
AATGCTACTTCCATGATTACAGTCCCCCTTCAGAAGAATATCATTCAAGA
CACAAAACCAATCCCTTGGTGGATTATCTTAGTATCTGTCATCGCTGCTC
TTATACTTCTAGCTATTCTGGTCTTCATTTTATACAAGTGTGGCTTTTTC
AAACGTGATCGCAAGAAGAAAGATGCAGTAGATGGAGAACCAACAGAAGA
CTCCAAATTAAAAGATCTCGAATACGACGAAGATGatgaataaataatta
aaactactctcgggtacctaatagcNN

Run BLAST on NCBI

transcript from alignment at scaffold_41:468622..481164-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00064220 ID=TCONS_00064220|Name=TCONS_00064220|organism=Clytia hemisphaerica|type=transcript|length=12543bp|location=Sequence derived from alignment at scaffold_41:468622..481164- (Clytia hemisphaerica)
AAGAAACTCATACAAAAAAGAAATAATATAAAACAAAAACTTACAAGCAA
GTTGCAATGCTTTTGCCATCCCTCCTGACCACTTTCATCGTTATTTTGAC
GACGACATTCAGAAGACCAGTGAATACTTTTAACGTCGAAACAGAACGAC
TGGTTAACGAGTTTACCATCTCACAGAAACAATCGCTCTTCGGATACAGT
GTGGCTCTACAAAAAGAAGGGTGAGTGTGTGGAAAGATCAAACTTTAATA
TGTGATACTTTGATAATTCAACCCTGTTCTTTTTCTGAAAAGTCTCTTTC
AATGGGAAGAATGCACGATAAAATATCTTACTTCTTATCCTGACAGCCCT
GTTTCACTTCTCAAATGTTTTTGGTGTGTGGAAACACACTGGCAATTTTT
CGCTAAATCAAAACAAAACGATACAATGAGAAACAGTCTACTTAGACGGT
GCTTTTATTTACTCAATCATTTCAAACCCTACCGAAATCAAAAAGTCTTA
TTAAACCAACTTATTCAGAAAAAAAATATTAGTCAGCTCACCATTTTATC
TGCTCTTCTTCATCTAGAAATTTGTTGGTTGGTGCGCCATTAGCTTTGAA
TTACGGTGGCAATAAAACAGGAGCGATTTATTCATGCGGTGGCAAGAACA
ATAATAACTGTGTAGTCATGGAATCCTCAGGTATCTTTATAATAAAGCTT
AAAAAGATAAGAAAGGAAAGAATTCACATTTGCCTTAATTTTTAGTCTTG
TCTTGTACATAGTGTTTTGAAAAATATTCCTCTAAGACTAGGCTAGCGAA
AATGGCCTTTCTTCGCTACGACATAATCTAAAAACAAGAAAGTTAAATAG
ATATCAGACAGTATAACAGTAATACCTAGCTCAATTTGACTTATTCTTCC
ATGTTTCTAGGTGTAAAGAATCAGTTCCTGGGTGTGACCGTGACATCACT
TAATGACCACACCTTTTTCGGTTCACCGCGTTGGAACAAAGAAGGATCAC
AAGAGACCATCGGGCGAATCATTCTAGTGGAAAAGGATAAAATTGTGTTA
GAAAAAGTCCCCTGTGGCACTTGTAAGTGATAGCTAGTCCAGCTTGTACA
AAACGTTGTTTCAACGTTTATTGAGTATTCACTACGTCGAATAAACGTTA
AAGGAACGTTGAAACAACGTCGTGCGTCAGCTATGCACACCCCTGCTAAA
TTAAAACCATCTCAAACAAAAAATGAAAAAATTGCATTAGAACAAGATCT
GTGGTGGTACTTGCGATATCCGAATTTTTTATTGTTGTTCAATTATACTA
CCCACCCTGTATAAGGATTTAATCACTCACTTACCAGATGTAGGAGTTTA
TACTGTATTGAGGAGCTTTCAGATAGATTTATTCTACATGAATCCAAGTC
AATCCACAATGAAGGTTGGTTGGTATATACAGCTGACGCCCTCTTATTCG
ACGTTCTACTATTCGGTACGCTCCCTTATACGATGAAAATCCCATTACCC
ATGAAAATCGAATTAGAAAGCTTCCATCGTAATCTACAATTTGCAATTTC
ATTTCATTTAGTACCGACTACTCACATTGGGTATGGATATTGCCAATCAG
GATTCAGCTCCAATGGTCTCCTAGACAACGAGAAGCCGTTATTTGTATAC
GGGACACCCGGTGCGTTGCGGTTCTCCGGCGCTCTTTTCGCCATTAATGA
CCAACACAAGACTGTCACCACTTTGAAAAATCGAGATAGTTTGAAATCAT
CGTCTTACATGGGTGAGTATAATTTTTTTCCATTCTTCTCTAAAATACGA
GGGAAAAAAAGAAGTAATGATTTTAAATGACTATTGGTTTCGCCTTATTG
ATCAGTTAGGCAACATTTGTCCATTTATTTTCATACAATAGTACAAACAG
ATGCAGATTTATAAATGCAAAAGTATACTTAGACATACAGTTTATTAAGT
TTTCTTCCTTGTTCTTCTTATATAGGTTATTCATCAGCAATTGGAAAGAT
TTCAGATTCTAATGAAGAAGGTTATATAGCAGGTATGAAACAATTTGTTG
TGTATTTCCTTGTGATGCTTACAAAAATATATTGAATAAGGATGAAAATT
TACTCGTGCTCAGGAGGCAAAAAGTCATCATAAATTGAGGTTCACATTGA
NTTTCAATATTATCAATATTAACTAAAGATGAAAATTTACTCGTGCTCAG
GAGGCAAATAGTTATCATGAATTGAGGTTCACGTTGAAGGTTCTCTCTTT
TGATGGCGGGTTCGGCTCACCGCAGACCTTTATAGACATTTCCTATAAGA
GACTCTCTTTGCCAGAGGAAGATCAGAAGCCTAGGGGATCTTAGACACAT
TTTGATAAATGTTTTTTTCTATTCTCCATTAGATGTAGTTGGTGGTGCGC
CAAGAGCCAATAACATGACCGGTATGGTAAGTATCATATGTCTACTTTGC
ACCATAGTGTATCTCGCCTTTATCGTTGCGTAGTACTTCTACGGAAAACA
ATTTTGAAAGATCAGTAGATAGTGGTCGGGTCTGTTCACAGACAATGTAA
TAATCTGATTTGGAAATGGGTGGTTCTTTTTCGAAATAAATGTGTAGTGG
AGAAAAGGTAAACGGTGAACAGTATAATATGAGTTGTTGCAGAAAATTTT
CACAGTAAGTTTCAGTGGGTTACTCCTCACAGAATAAAGCTGTCTATAAT
CTTTAATTAATCTATAATTACCCCGTGTGCCTGCCTGTCTATTCAAATGT
TTTCATCTTTTAGGTTCTCATTTACAAATTGACCGATACAGGATCGTCAG
TCTTGGAAAAATTTCAGGCGCCCGGCGAAAAGGTAACGAACTTCAATGTG
CATCCATTGCCCCATGCTGACTGAAATTTTGAACATAAGCGCCTTATTTG
TCTTAGCCATAGAATCCCCAGAAAGCTTTAAAACCTTCGGAGTCACTTTT
AAAAACAAACTCTTTGCAAACTCTTATAAAGATTATTTGAATTTTATTAT
TTGAATAGAAATTCCTTCTGCTATATTTGAAAGATCATTGATAGTAAAGT
AATTAAACATTACACTTATAAACACAGCACTTTCCACAGGTCAAGGTAAT
AACATCCATATCTATAATGGTAGCTCATTGCATAAGCTCCTTTGCAAAAT
TTCTTCAATCGCGACCTCTACAACGGATCTGAAAAGTATCCATTTACGTT
TTAGGTGGGCACATATTTTGGAGCAGCAGTTTGTGCGGTCGATCTGGACA
ATGATGGCAAAGATGATTTGGTGGTTGGAGCACCGCAATTCGCAAAAATC
ATCGACGAAGGACGAGTTTATGTTTATATGAACCGAAAGGGATACAGATT
CGTAAGTCATTGTAACCTGGTTAACTGGTTTATTAATCATCATGTCAGAG
AGCGAGAGTCTAAAAGAGTGCTGGATAAAAGCACGAGGCACTAACAGATC
TTTCCTCTACGTTTATCAAGCTCCGACAATCATTTTCCTCGTGTGACATC
CTTCTGACATCCTTCAGCTCATCTGGCAAGACAGTGTACAGTAATTGTAA
AATTGTTGCTTTATCGGGTTTGTTAAAGGACCATCAGCTATAACATGAAG
CAAAAAGAAAATGGATGTTTTATTCTCAAGCTTCATCCTCCGAGCAAGAC
AAGCACTCGCTGAGACCTGAACCCTAGTCACTAGGCCTCGATCTCATCGT
ATTATGTTTTCATTAAACAGGTTATAATGTAAAAATTCCTGAAGAAATTA
TACACCAAATAATTTTTCCTATCAGACTGGATTCGATCAAACTTCAGTTT
TGGAAGGAGATAACCAACAAGGAGCACGTTTTGGAAGTTCAATTGCAAAC
ATTGGTGATATTAATAAAGATGGTTTCCAAGGTAAGGACTTGTGATATTG
TGTCCATACGATGAATGTCTCAGCGCTGGAGCCTCCGCAAGGGGATTAAT
TTTTTCGGTATCTCAGGGAAAATGGTTAACATTGGGGGATTCAACGCAGG
TTTTTTATTTGTTATTTGTCCCATTTTCCGTTTAGACATCGCCATCGGAG
CACCATACGGAGGGGTAGACGGTAAAGGCATGGTTTACATTTACAACGGT
GGACAAAATGGATTACGTGTAAACCAACCTCAAAGAATTGCAGCCAGTGA
TGTTTCAAATACACCACCTCAAGGATTTGGGATCTCCCTGGCTGGTGGAG
TTGATATCGATGGTAATGGATACACAGGTAAGTTTCTATTGTGTGACGAA
GACTGTTTATTGACACTCTATAATTCGATTTTTAAGGGAACAAACATTTA
TTCAAATTAGAAAAGATTCGAATCACAGAAAGTGATTTAAAGTGACAGAA
AGTGTTCCAGCTGTGGGGACCAGTAATTTAATTCGAGAAAGATTCGAATA
ATAGAGTTCTAACGGGAGTTCTAACGACTGGGATTGATTACTCTGTACCA
AAGATTTTCTTTGTATGTTTATCAAAGTGAAGTACGGAAATGAACTTTCG
TAGATATTTCTGGTATATTTACATAGATAAAAGGATTTATATTTAACTGA
ATGGTACTGATAGTGATACCAATTATTTTGATATATAATTTCGATGTATT
CTGACTCAGATTTCGAGTTCTCGACTCTGGATTGCACAGCTCCTTCATTT
CACTATCCTTTCTTTAGATCTTGCAATTGGTGCGTTCAAGAGCTCGCAAG
CATATACTCTGAAGTAAGTGATTGACCACAACGCTTTTGTGTCCGGGGAT
GGGGTTTATAAATCAAAATGTCCAAAAAGTTGCAAGTACCAAACGAACAA
GACTTTTTTCTCGACACCGTCCCTATTGTAGCTATTTACAAATACCCTCT
GGAATCGCGGGAGGAGATTGAGTGAATAATTGAGAAAATAAAATTCCTTC
ACCCTCCATTGGCAGACTTACTCGGGAAAATCCCAATAGAAGTTTCTCCT
CGGATATCATTAACTCCTGCAATTCTTATGGAGATGGGCTTTCTAGACGA
CCCACTAACACAAGAAGAGATGAAAGTAAAATGATAAATAAAGTTATTTT
CGTTTGAGTTTAAGAATAAGAAAATAATTATGGAGATGTTATACAAGATC
ATTAAAACGATATTAATCAAAATTGACAATCTCGTACCAAAAGCACCACT
TTCTAATTTTACTGATAGACGTAGGTACAATCGTGAGCGCTATTTGAATC
ATCAAAAATCAAACTAAGGGACTGGGTTCGAGTTTGCAAATTTTTATTTT
TTTCAGAACACGGCCAGTGATTAATCNGTTCGAGTTTGCAATTTTTTATT
TTTTTCAGAACACGGCCAGTGATTAATCTAGAGACAACGTTATCGACCAA
CTTGCGTGCCGTACCAAGTCAAATCAATGAACAATACAGATGCACCAAAG
CTGGATATACTTCCTTCAACTGGTATACTAAAGAGTCAAACACATTAAAA
AAATTTTCATTTTAAGAAAACGTAATCAGGCAATAATTTAGTGGTTGACT
GAATTTTTTTTTTTTTTTTAACGAAAGAAAACATTATATCAGTAAATTGC
TGCTAGTATTGAAACCGTTTTCTAGATCATTCGACTCCTGAGCTGCAGAA
TAGAAATATTTTCAATTTTCATCTTTCAGCATTGAATTATACATCGACCT
CAAATACACACAAAAATCAGCTTCACAATATATTGGTAAGGTTAAGCATC
ATATTATTTTCCCTAATTTCTCTAAAAAGACAAAAAATTAATCTTATTAA
AGGTGAAATCTTCGTCCTAATGTGCTTCTTTTGACGTACAAATGACAATG
TCTTAAGGCTCTCGATTTTTCGCGTTTTACTAAATGGCATTTTGGGACAT
GTAATAAGACTTTGTAAGATAATATAGCAAAAATTTTTAGAGGTTTTGCT
TAAGACCGTGGAATAAATAAACAACCCGAAAATGCCAAACCAACTGATTA
TCCCTCATTTCATTTGATAGATATTTCATACACGATTGATTTGGATGTCG
AAAAGCTTGACAAAAGAGCAGTTGCTATAGAAACTGGACGTACACAGATC
AAAGGTGTAGCAAAATTACAACTCAATGTTGATAAGAGAATCACTCAAGT
CATTGCTGTATCTGTAAGTCACGATTCGTCCTCGTCTTTAGAGAAAAGAA
TGATCAATTTGATAGATTCCAAGAAAATTTGCATTGGAATTGCTTTTTTG
CAGTACTACTGTTTCTTTTTGTACCGCTTAAATCTAACTAAGATAACTAT
ATAGTATGGGGAATTTTAAAATCTCTCTATTCATGTTATGCAATGCAATG
TCTTCCACGAACCCAACAGCTGATTGGCTGATTTTACGTCACTTGTAACC
AATCAGCTACTGGGTCCGTGATGTAATAAACATTCAGATTACATGTCCCT
TTTCAGGTATCTCAAGACTTGTTAACAGCCATCGAGTTTGTCAGTCGTTA
CCAATTACAAGAGGACGCAAGCACATGTATCAACACACCTTGTCCGATTT
TAGATCAATACGGAAGCTCCGTAGACAAACACCTTGTTCCGTATTTCAAA
GAATGTGCGTCGGAAACAGTGTGTAGACCGGATCTCATCTTGACCAGCGC
TCTGGCTTATCCAAGGTGAGAAATTTGACCAAGGAGTTGAGGAAATCAGA
AGCAACGCTTTGAAATTACAATAAAGGTCCCTCAAAAAAAATCTCAAGGC
AACCAAGGAGTCCCCTTCATAATTGTATGCATAATTGTAAAAATGGGATA
AAACGTTCAAAAGCAACTCACAATACTGTTTAGTTTAAGCTAAGGTTTTT
AAAAAGTAGCACCATGCTAGCTCACTTGTAATTAAAGAACACTCTCTCCT
TACTCATAGGAACACAGGGTCAACCAAGATAACATACGGTGTAGTTGAGC
GAGTAGATGTATTGGTGATGGTGGAGAATGGTGGTGAAAATGCATACCAG
TCCTCCATGACAATGAAATATCACAGTGATCTTCAAGTTATTGGTGTGGA
CATTGAAGAGGTCAGTAGTTCTGTGCTCTATGAGTCTAGATAGCCGGGTT
AGATAGCTAGATCAGGTGAATATTATTTTCTTATCTTGGTAGATATATCT
TAACCGGATCCGTTTAAATGCGTTTTTATATACATGGTGTTAATTTTCGT
GAGCTAATAGCTTGGTAAAGTCTTAACTTACATTCTTTTTAGATTAAATG
ATTGTACTTTCATAAAGTAAGGCTCATCTTTTGCTGATAAATAAAAAAGG
GCACATTTAAAATCAAAACAATTAGTCAATATCTACTCTTCGCTTTACAG
AAGACAACCTTATGGAAGACAAAGCTCTTGGATTCATCAACTCGTCAACT
TGAATTCATTCTTGGCAACCCTGTCCGAACTAATTCAAAGGTTTGACTTG
TAATATACGTATTATCTCAATTTCAAATAAGCAATGGGCTTTTCCAGAAA
AAAACCGTATTCTCCCTGTTGAGGAGGTCCATCCCTCTGTGGCTGGAAAT
GCTGTAATCCCCTGGAATTCCAGGCAATTTCAGGTTTGAACCCCTCTGGA
ATTCTGAATTTTAGTAGGATTTAAAAGACTACCCCCATGGAATTCCAGTT
ATTTTTGACAGATTTTGTATCTCCCTATGGAATTCCGCCACATATCAAAC
CTTACCCCCTTGGAACGGAAATTGACCTCCTCAAAAGGGGGGTATACGTT
TTTTTTTCTGGAAAAGCCCAATTTGTTTACATTAAATTTTTTTGCCAATT
TAATCATGAATATTCCTGAAGAGTATATTGTTATTTTAAAAATCCAAAGT
TGGGCAACCACCGTGTAACTGACACGTTACGAATTATACGTTATAGAGGA
AGCAACTTGCATGTTGATTCCTGAATGAAAAACAAGGTCTTAGGAAATTC
ATGACTCTACTTAATACTAATTACAATACTCCAAAATCCTTTTTTAGTTA
CTTGTACGAGCAAGATTCGCTGTTTCAACAAAGCAAAGACCAACAGCCTC
AAAATATGTGTTTGAAATGGGAGCCACAGCGTAAGAACATCGTTAACCTA
TGTTTATCCATCATATTAAACTAAGCTTTCTATCTGGAATAGATTCAATT
TTTAATATATTGCTTCAGTCTAAGTCTAAAATCGGTATTTTCCTAGTGTC
AAGATCAAGGTCAGGCTTTCATAGTCTGCTTTTTAACAGAAGAGTAAATT
GAACATCCTTGAACATCCTTGAACATCCATCTTGCCATCCTGTCAGTCAA
GGGGATATTTCACGGCAGTACTTTTGTAATTCTTACATAGGTTTGGAGAA
GAAATGAACAAGAAAGACAATAAAGCAATTGAAGAAGTCGATGTCTCTGT
ACAAACATGCATTGACGTTATACCGTAAGTTTTCTCAATGGTCTAGTCTC
GAATGATCTGGAAAAGCAACTTACTAAGGATAGTACCACTACCCCACCAC
TATCATTCGTATCATCCTGTCCGAGAAAATCTACCTGAAAGGGTTCGGTT
TAAGCCATATGAATGATATCATCTCAATGTATCTCAAGTCAAGATGCTGA
CATATACATATGGTTGACAATTTACCCTGTTAAGTAGGAGGGGGCTACAC
TTGATCCATAGCATACTATACCGACATAGTACGTCAGTCGGCATTAGTTG
GTACTCTGCTGACGATATTTATAACTTCAGAGGTGCCTTTTTCGGCACAT
GTACAGTCCAAAAGCTTTAGAATATTCTCCGTCGTACAACTTCCCCGAAC
ATTTCAATTACGTTAAGTGAAATCTTACTCATTTCTCATTCATAGTGTAG
CGAGACCATCAGAAGTCTTATACCAACTAGATACCGCCAAACATCCGCCT
CCTTCACCCAAAGAAACGCCCATCAATCAAACTGTGACTACAGAAGTTGT
TGGTAGTAAAGTCATCTATTCATTTACTGTAAGTAGAGAAACTGTTCTGG
ATTTTATAGCAAGATCAGACCTTTGAGAGCTTCATAAAGCTTTTTAGTGT
TTCTCCTTGAGCAGTATAAGATGGGTTCCTGAAATGTCACTGATTGACTT
TATGTATATTGTTGAGCCGAGGCAAATAATAATCAGATTTTTCCAAATTT
TACACACTAAGAGTGTGCACTTTTTCTCATCTTTGCTCATTTCGACCCTT
ACAGTGAATTTAAAGAAGCTTGGAAAAGGGACCCTTAAGGGCCGCACGTA
CGGAAGATAAGTGCTCTCCCCCAGGTATCGAGCCGTCTTCCTGAGAAAAT
TAAAAGTCACGAAAAAGTCTTGCTTGGCAATGACCCGATATTTGATGCAG
ATTTGATATGGTAAACTTCTTAAACTATTTTTTTCACAAGGTCAAGAACA
CTGGTTCGATGCCGATGCCAAAGATGGCAGCCCATATTCGAGTTCCCGTG
CAAAAGAATGGAGAAGATATGGTCTACGTTGTCCATCTATCGGTAAAATC
AAATTTTGTGTTTGTAAAGTTGGCCTATATATGGGTTTTGGGTCGCGGTG
CTCCTAGGTCCAGACTTAACCGATACAAGGCCTAAACTACTGAGCAATCG
CATATGATACCACTACATCACTTAAAATTCTCACCCGCTTCTCGTCCTGC
TTTTATGTCACACTTAATGTGATCTTTCATCTAATGCTGGTAGAAAAGTG
TTGTTTGAGAAACGTCAATCAATTCTCGAAAAAATTACATCAAACTAAAT
TTTTTTATTTTTCAGGTCGATGGATCTGCGTGTCTGGAAGAATTTAACGA
GCTCGGATATAGAGTAAGTGTGCGTTAGTTACTTGTTCTTGTCAATTTAT
ATAAGTATAGCAAGTAATGGCATCGAGCAGTGATTACCTAAGAAGAGTCT
AAATTCTCTTTGTGTCTGATAAAGAGTTCTTAGATATTAGATGAAAGATT
CCCAAGAAGAAACATGCCAAAAATCTGAATTATCAAAAGCAACAAAGAGC
GTACCCAATCAACAGCAATCTCGTACCCAACGCCACTTGTACCACTTTTG
ACTGATGGACGTGATACAATCGTCATCGCTATCAAAATTATCAAAAGCGA
GCTAAAGGGACTAGATACGAATACTTTAATCGTAGAAATTTTGGCGAGAA
TAATTTTAGCGTATATTAGAGAGTCAGGAAAATCTTGATTTTTTTTGGAT
TTATTTCAGCAAATCACGATTTCAAAAAATTTCGCGTGGATAAATTTTAG
CTAATATTCGTATTACATTATTGACTGAATTCGTTTTCTAGCATTTCTTT
GCACTGAAACCCTTCCAATTGATAAAAATGTATCAAGGCAATATAACCAG
AAATTTCGCGCGGATAAATTTTAGCGATCTGTCCATTCGGCATGTTTTAG
CGAGATTTATTATAGCGAAAATAGGGAAAACTCGCTAAAATGCTAAAAAT
AGTCAAGCTAAAATTTCTACGATTAAAGTATTTGGATATTCACGCTAAAA
AAAAATTACTAAATCGTGAACGTCTTTCATTAGCTTGAAGACGGTATAGA
GGACGAGATTGAGACGGAGATCACTCAATCAACCATCTCAAAGATCGACG
CGAATGTCAACAACAACAAAAAGAAGAGAAGACGTGTCACAAGAGAAACA
CACTCTACTGAAGGCGAGGTATGGGATTGTTTCCAGTGTAATTTTTAAAA
AGAATGAGGATGAATGGATTAGGAGACATTAATTCAATTTTCCAGCAGAC
GACAAATTTTAATCTCATGAATAATAGAGATGAAATGGAGTCTTTCGTCT
AGACGTTCGAGCTATTGAGACTTTGTTAAGTGAAGGGGTCTGAAAACTTG
TTCCAGTTACGGGGACTTTAATGTCAGAAATCCCTACGAGAAATGATGAC
TTATTTTATTATTAGGTCTCATGGGAATTTTTATAAAAGTACAATAGGAT
TTGTGAAGCCTAGAAAATTAGAACGGAAATTTTTCCATTTTTTCAAGTAC
TGCAAGGAAGGCTGTAAGACGTACACATGTCACATTAACAGTATCGAATC
GAATAAACGAGTTATCATCACCATGGTTACACGGTTGTGGGATTACAATC
TACCAAAGATCGACCCGAAAGAAATTAAGATGGAAATCAGTACAAATTTT
GTTGGTCCACAGAAAGATATGTTTGAGCAGAAAATTGGATGTAATGCTAC
TTCCATGGTAAGGATTTTTTCATCGATCCGTAGGATATGCAACCTCTCAT
TTCTGAAGTTATAGTCTGCTAGGATTAGCTCAGAATAGTAATAGTCCATG
AACTGAAGGTCAAAATGGGCTCAACGAGTGCACCAGACAAATTAGATATG
AAAAGTTTCCAAATTTTATGTAGAATAAGAACTTCGATGTTAGCAAGGTC
AAATTAAATGGAATAAGGATTTAGTGACTGAAATTTGGCACATAGGTCCT
TTATAATAGGTCTAAGAGCCACCAGAGCCACCGTAGTCAATTAGCTTCGT
TAAGTTTTGGCCCAATTAAGGATATATTGTGACGTCCGTCTTTTAGTAAA
ACCCTGGAAACATTTTGACCCTTAAAATGGTCCGAAATTGCCTAAAATCA
ACCATATTTTGTTGTGATGTTTTACTGCATTTTAGTTAGTCATTTAATTG
TTTTAGATTTTGAAATCGTTTTTAAGCTCAACTTTCTTTTACAGAAATCA
TTTGCCTGAATGATGTATATGATACTATACGAAATATANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNATGTCTTCAGCTGCCAAAGAAAATTTATGTTTTCGAACCAGACT
CAGAAGGAGGGCATTGAAAACGACCAAAAAACCTCCTTTAAAAAATCTTT
TTAAAGAAGACGAACTATGGGCAATATTGGACAAGTTTATTTTTTCTGTT
TAGATTACAGTCCCCCTTCAGAAGAATATCATTCAAGACACAAAACCAAT
CCCTTGGTGGATTATCTTAGTATCTGTCATCGCTGCTCTTATACTTCTAG
CTATTCTGGTCTTCATTTTATACAAGGTACATGTTAAGAAAGTTATTGGT
CATTTTTGCTATCCTTGCTACCCTCCTTTCATTAAAATTATGATTTTTTT
TTACCATCCCCTAATTTGACAGCCAAAACAGTCAAAGACTCAAGTTGGAC
AGAAATAAATGGCTTTATGCACATCGTGTTTACACTACCCCCTGTTTTTC
AATAACTGCATGACTTAGCTCGCTTTAACCATATTTTTCAACACATTTTT
TCAGTGTGGCTTTTTCAAACGTGATCGCAAGAAGAAAGATGCAGTAGATG
GAGAACCAACAGAAGACTCCAAATTAAAAGATCTCGAATACGACGAAGAT
GATGAATAAATAATTAAAACTACTCTCGGGTACCTAATAGCNN

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_040262	XLOC_040262	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_41	supercontig	scaffold_41:468622..481164 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.210286	0.143134	0.123064	0.114512	0.101233	0.0772752	0.688849	1.4307	0.870534	1.16865	0.261638	1.08892	4.08493	3.92882	0.588557	0.31461	14.6197	26.0064	8.32192	6.31671	25.8518	24.4098	10.3844	14.8718	20.6811	22.4818	6.26517	10.3272	16.455	24.9621

Blast

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BLAST of TCONS_00064220 vs. Swiss-Prot (Human)
Match: ITAV (Integrin alpha-V OS=Homo sapiens GN=ITGAV PE=1 SV=2)

HSP 1 Score: 258.455 bits (659), Expect = 1.624e-71
Identity = 276/1029 (26.82%), Postives = 457/1029 (44.41%), Query Frame = 3

Query:  183 SLFGYSV-----ALQKEGNLLVGAPLA--LNYGGNKTGAIYSCGGKNNNNCVVMESSGVKN--------------QFLGVTVTSLNDHTFFGSP--RWNKEGSQET--IGRIILVEKDKIVLEKVPCGTLPTTHIGYGYCQSGFSSNGLLDNEKP-LFVYGTPGALRFSGALFAINDQHKTVTT--------------LKNRDXXXXXXXXXXXXAIGKISDSNEEGYIADVVGGAPRANNMTGMVLIYKLTDTGSSVLEKFQAPGEKVGTYFGAAVCAVDLDNDGKDDLVVGAPQF------AKIIDEGRVYVYMNRKGYRFTGFDQTSVLEGDNQQGARFGSSIANIGDINKDGFQDIAIGAPYGGVDGKGMVYIYNGGQNGLRVNQPQRIAASDVSNTPPQGFGISLAGGVDIDGNGYTDLAIGAFKSSQAYTLKTRPVINLETTLSTNLRAVPSQINEQYR-CTKAGYT-SFNCIELYIDLKYTQKSASQYIDISYTIDLDVEKLD-----KRAVAIET---GRTQIKGVAKLQL-NVDKRITQVIAVSVSQDLLTAIEFVSRYQLQEDASTCINTPCPILDQYGSSVDKHLVPYFKECASETVCRPDLILTSALAYPRNTGSTKITYGXXXXXXXXXXXENGGENAYQSSMTMKYHSDLQVIGV--DIEEKTTLWKTKLLDSSTRQLEFILGNPVRTNSKLLVRARFAVSTK-QRPTASKYVFEMGATAFGEEMNKKDNKAIEEVDVSVQTCIDVIPVARPSEVLYQLDTAKHPPPSPKETPINQTVTTEVVGSKVIYSFTVKNTGSMPMPKMAAHIRVPVQKNGEDMVYVVHLSVDGSA-CLEEFNELGYRLXXXXXXXXXXXXXXXXXXXXDANVXXXXXXXXXVTRETHSTEGEYCKEGCKT-----YTCHINSIESNKRVIITMVTRLWDYNLPKIDPK----EIKMEISTNFVG-PQKDMFEQKIGCNATSMITVPLQKNIIQDTKPIPWWXXXXXXXXXXXXXXXXXXXXYKCGFFKR 3056
            S FG++V     +      LLVGAP A     G  + G +  C   +   C  +E     N              Q+ G +V S  D     +P   W  E  QE   +G   L +  K V E  PC +      G G+CQ GFS    +D  K    + G PG+  + G L  I+DQ   + +              L  R +           ++  + D N +G I D V G PRA    GMV IY     G ++   +   GE++  YFG +V A D++ D   D+ +GAP F       K+ + G+V V + R    F    QT+ L G  +  ARFGS+IA +GD+++DGF DIAI APYGG D KG+VYI+NG   GL     Q +     + + P  FG S+ G  DID NGY DL +GAF   +A   + RPVI    T++  L   PS +N+  + C+  G     +C  +   LK   K       +++ ++L ++KL      +RA+ + +     ++   +++  L   ++ I  +   S  +D LT I     Y+L    +       PIL+Q+  +          +C  + VC+P L ++       ++   KI  G    + ++V  +N GE AY++ + +        IGV  + E    L      ++ TRQ+   LGNP++  ++LL   RF+V  + +  T+ K+  ++ ++      +K       +VD++V   +++  V+ P  V   +   +H     KE P     T E VG  V + + ++N G     K   H++ P + N   ++Y++H  +DG   C  +      R++       E   T +   + D  +           R+   +EG+    GC         C +  ++  K  I+ + + LW       + +     +K   S N +  P K++  + I    ++++T  +   I     P+P W+I+++V+A L+LLA+LVF++Y+ GFFKR
Sbjct:   47 SYFGFAVDFFVPSASSRMFLLVGAPKANTTQPGIVEGGQVLKCDWSSTRRCQPIEFDATGNRDYAKDDPLEFKSHQWFGASVRSKQDKILACAPLYHWRTEMKQEREPVGTCFLQDGTKTV-EYAPCRSQDIDADGQGFCQGGFS----IDFTKADRVLLGGPGSFYWQGQL--ISDQVAEIVSKYDPNVYSIKYNNQLATRTAQAIFDDSYLGYSVA-VGDFNGDG-IDDFVSGVPRAARTLGMVYIYD----GKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVFIGAPLFMDRGSDGKLQEVGQVSVSLQRASGDF----QTTKLNG-FEVFARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEGQWAARSMPPSFGYSMKGATDIDKNGYPDLIVGAFGVDRAILYRARPVI----TVNAGLEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADGKGVLPR-KLNFQVELLLDKLKQKGAIRRALFLYSRSPSHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRLDYRTAADTTGLQPILNQFTPANISRQAHILLDCGEDNVCKPKLEVSV------DSDQKKIYIGDDNPLTLIVKAQNQGEGAYEAELIVSIPLQADFIGVVRNNEALARLSCAFKTENQTRQVVCDLGNPMKAGTQLLAGLRFSVHQQSEMDTSVKFDLQIQSSNL---FDKVSPVVSHKVDLAVLAAVEIRGVSSPDHVFLPIPNWEH-----KENP----ETEEDVGPVVQHIYELRNNGPSSFSKAMLHLQWPYKYNNNTLLYILHYDIDGPMNCTSDMEINPLRIKISSLQTTEKNDTVAGQGERDHLI---------TKRDLALSEGDIHTLGCGVAQCLKIVCQVGRLDRGKSAILYVKSLLWTETFMNKENQNHSYSLKSSASFNVIEFPYKNLPIEDI--TNSTLVTTNVTWGIQPAPMPVPVWVIILAVLAGLLLLAVLVFVMYRMGFFKR 1023

The following BLAST results are available for this feature:

BLAST of TCONS_00064220 vs. Swiss-Prot (Human)

BLAST of TCONS_00064220 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ITAV	1.624e-71	26.82	Integrin alpha-V OS=Homo sapiens GN=ITGAV PE=1 SV=...	[more]

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TCONS_00064220 (transcript) - C. hemisphaerica