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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064216 ID=TCONS_00064216|Name=TCONS_00064216|organism=Clytia hemisphaerica|type=transcript|length=1212bp
AGGATATTGAGTTCGGTCATGTAATTACTTTCAATGACCTTTCAAAACAA
TTCATCACTACTGAAGAAGTACCAACCATTATCAGCTTCTGGTGGTACTC
AACAATCTCTTGCAATGGAAGTGACCTATCTACCCTCTGAAATCCTCAAC
ATCATCGCCCTTGTTATTCCATGTCTTTTAGGAACATTTGGTAATCTACT
TGTCACCTATGTATTCATGTGGAAGAAACGTAGAATGCGGAAACCGTTCG
AATCTTTACTATCAATACTAGCTGTAGTTGACATGTTTGCATCAATGGTT
GTTCCTGTATTATTCATCTATGGTGCTATTACGAAATACCGACGTTGGCA
TTTCGGATATATTGGATGTAAAATGATTTCAAGTTTTTTCCCAATCAGCG
TGACTTTATCTCAAGGGATACTCGTTTTAATTTCATACGAACGTTACAAA
TCGATTAAAGCTCCATTCGAGCGCTCGCTGCGACAAAGTTTCATTCTAGT
TTGGATGCTCATCACTTTTGTCATAGGTTTGATATTGGTATCTCCTTATG
TATACGTTCTGGAGTTGGTAACTTCTGACCAGTACGGTATCAACACTTGT
ATTCCGTCGGAGAAAGAAACAAGCATAATGTTGTTGTATAGCATTGGGAA
TGTCATCAGAGACTTTGGAGCTACTTTTGTTATGATAACATTGGGCCGAA
TGTCGAATAATGTTTTAAAGCGAAGCAATACGCAATTGAATGCGGACATG
ACACAATTTACGGACGGCCCTAGATGTCGTAACATGGAAAAAGCTCGTAA
AATGTTGATAGTGGTTGTCATAGTATTTTCCACGTGTGTCATCCCACTGG
ATGTATTTCAGtttattgtttacattttgtatCATGTTGGAGTGACATTC
AGTAAACGTGCTTACGAGACTGTTCTAACGTTCAATTCAGTGTTGAGTGT
TCTACAAATTATGAACAGTGCGACTAATGTTGTTATTTATTCGAGGATGC
ACAAAGACTTTACGCGCTCCTTGTTTTCTAATGCTCGTAAAACGCTTCGA
AATTTCTCGCAAATTGTTCGAGAGTTTCGTATGAGTGACCAGAAGAAAGA
ACAATCAACGGAACTTTTAGATTTATCTTTGTAAACGACTTGGAAAGGGc
tccaaaaatatatttgaaatcttagaggttttattttgaaagatgaaaaa
agtgaagctttC Run BLAST on NCBI transcript from alignment at scaffold_41:426183..427564- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064216 ID=TCONS_00064216|Name=TCONS_00064216|organism=Clytia hemisphaerica|type=transcript|length=1382bp|location=Sequence derived from alignment at scaffold_41:426183..427564- (Clytia hemisphaerica)
AGGATATTGAGTTCGGTCATGTAATTACTTTGTAAGTGACTATTCCTTGG
CATCTATTATTGAATTTATTTAATTTCAGCTATACAGAGGTCATAGTCGG
GGAAACGTCCGTTCGGTCCCGTCCGGTAATTGTAATTTTATCTTCAGAAT
AACTAGAAACTAGATCTTATTCATGCAACATTTATTTTATTTTATTTACA
GCAATGACCTTTCAAAACAATTCATCACTACTGAAGAAGTACCAACCATT
ATCAGCTTCTGGTGGTACTCAACAATCTCTTGCAATGGAAGTGACCTATC
TACCCTCTGAAATCCTCAACATCATCGCCCTTGTTATTCCATGTCTTTTA
GGAACATTTGGTAATCTACTTGTCACCTATGTATTCATGTGGAAGAAACG
TAGAATGCGGAAACCGTTCGAATCTTTACTATCAATACTAGCTGTAGTTG
ACATGTTTGCATCAATGGTTGTTCCTGTATTATTCATCTATGGTGCTATT
ACGAAATACCGACGTTGGCATTTCGGATATATTGGATGTAAAATGATTTC
AAGTTTTTTCCCAATCAGCGTGACTTTATCTCAAGGGATACTCGTTTTAA
TTTCATACGAACGTTACAAATCGATTAAAGCTCCATTCGAGCGCTCGCTG
CGACAAAGTTTCATTCTAGTTTGGATGCTCATCACTTTTGTCATAGGTTT
GATATTGGTATCTCCTTATGTATACGTTCTGGAGTTGGTAACTTCTGACC
AGTACGGTATCAACACTTGTATTCCGTCGGAGAAAGAAACAAGCATAATG
TTGTTGTATAGCATTGGGAATGTCATCAGAGACTTTGGAGCTACTTTTGT
TATGATAACATTGGGCCGAATGTCGAATAATGTTTTAAAGCGAAGCAATA
CGCAATTGAATGCGGACATGACACAATTTACGGACGGCCCTAGATGTCGT
AACATGGAAAAAGCTCGTAAAATGTTGATAGTGGTTGTCATAGTATTTTC
CACGTGTGTCATCCCACTGGATGTATTTCAGTTTATTGTTTACATTTTGT
ATCATGTTGGAGTGACATTCAGTAAACGTGCTTACGAGACTGTTCTAACG
TTCAATTCAGTGTTGAGTGTTCTACAAATTATGAACAGTGCGACTAATGT
TGTTATTTATTCGAGGATGCACAAAGACTTTACGCGCTCCTTGTTTTCTA
ATGCTCGTAAAACGCTTCGAAATTTCTCGCAAATTGTTCGAGAGTTTCGT
ATGAGTGACCAGAAGAAAGAACAATCAACGGAACTTTTAGATTTATCTTT
GTAAACGACTTGGAAAGGGCTCCAAAAATATATTTGAAATCTTAGAGGTT
TTATTTTGAAAGATGAAAAAAGTGAAGCTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064216-exon-scaffold_41-1575043694:427534..427564 | TCONS_00064216-exon-scaffold_41-1575043694:427534..427564 | Clytia hemisphaerica | exon |
| TCONS_00064216-exon-scaffold_41-1575043694:426183..427363 | TCONS_00064216-exon-scaffold_41-1575043694:426183..427363 | Clytia hemisphaerica | exon |
| TCONS_00064216-exon-scaffold_41-1510915933:427534..427564 | TCONS_00064216-exon-scaffold_41-1510915933:427534..427564 | Clytia hemisphaerica | exon |
| TCONS_00064216-exon-scaffold_41-1510915933:426183..427363 | TCONS_00064216-exon-scaffold_41-1510915933:426183..427363 | Clytia hemisphaerica | exon |
| TCONS_00064216-exon-scaffold_41-1491911889:427534..427564 | TCONS_00064216-exon-scaffold_41-1491911889:427534..427564 | Clytia hemisphaerica | exon |
| TCONS_00064216-exon-scaffold_41-1491911889:426183..427363 | TCONS_00064216-exon-scaffold_41-1491911889:426183..427363 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_41 | supercontig | scaffold_41:426183..427564 - |
Blast
The following BLAST results are available for this feature:
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