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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064209 ID=TCONS_00064209|Name=TCONS_00064209|organism=Clytia hemisphaerica|type=transcript|length=1454bp
GTGAACCTTTTTTTGATGATGTTTTCTTTAGTCATCAACCTTGAACATAC
TAGTATAAAAGTGAGGCGTGTATGCGGAAATTGattaatattgaaaaaat
tttacttggAGGCAGTCGTTTGGAGAACTCTCATATTTAAAGAATCATGT
GGACTTCGACAGCAGTCATCTTAACATTATTCGCTTGGATTTGCAATTGT
GAAGtACAATGGGAGATGCTTGGCAACAATATCTGTTACGGCGCACGCCG
CGGAACATACGGAACAATCAAGCTTGAAAAAGAAGGATTTTTATTTGCAC
TTAAATTTGAACACGTAAGCGGTTACTTGACGTGCGATCGTGGACGTAAC
ACGTATTATGCAAGCAACTGGGGATGTCACGCTGACGGAGATCGTAACGG
GATCACGAACAAAGACATTGGTACGTTTCTGACGGACGAATCGGATGAAA
TCATTTTTCCCGCTGGAGCTAAAGAATTATCACAGTGGCAAGAAAATCCA
TACTACAGATTACCAGGATACAAAGGTGATTCCAAGGACCTCGTTATGGC
CTGTCATTGTTCACCGATGTACGCTCGTGTTGGTCAAGAATTAcgtatct
ggtacggcgaagcACTTTTCAATCGAATGATTCGTTCTCGACGATATGAC
GAACGAGATAATGGTGGTCAACATTGTATCAATATTTACGCCAAGTTTGG
TGGATTATAAGATGTGTGTCACTCCTTAATATTGAGTTTATGtatctgtg
tttttctgcgGCGGAGACGGTCAGCTTCTGCtttgtctacatcctgactg
actaaGGACGACGGTAAGTCAGTACTTTTACCGTCTTCGATTTTGCCGGT
CAAAGCTTTggttttttttccaaatcggCCCAGCCACTCAGCCGTCCTTA
ATGaagcaaatacataaactcgttaATATTTTTAGATGGATTTAGAAGCT
ATTTTGAACTCTCCATTTTCGTAGTTGAGCAAACCTCAATATTTGCTTGC
TTTGGAGCTgtaatatacacgtttttctttttttaagaaacacactttta
agaaacacgaggctcagaatgtctaaaaactaagaaacatctaagaaaca
tgctgaggctgagaatgagaaaataacattttttaattcggtttttttaa
gaaccttccaatccagcctttcatataaggctgattatgtcaaaaagttt
agaaacatgtaagaaacatttaaggctcaaaaggccgatttcttaagaaa
cattgaggctacttggtaaaactagtttcttaaaaaaaaacgtgtaactt
tGATACCAAACTCTAATACctattatttgttttttaatgattttttaatt
actttttatttttgttgattattttgtgatatatttttattttctcaaat
ataaataaattattaCCGCCGTAAGATTTTTCTTAAGAACGGCTTACCTA
TAAA Run BLAST on NCBI transcript from alignment at scaffold_41:374673..377332- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064209 ID=TCONS_00064209|Name=TCONS_00064209|organism=Clytia hemisphaerica|type=transcript|length=2660bp|location=Sequence derived from alignment at scaffold_41:374673..377332- (Clytia hemisphaerica)
GTGAACCTTTTTTTGATGATGTTTTCTTTAGTCATCAACCTTGAACATAC
TAGTATAAAAGTGAGGCGTGTATGCGGAAATTGATTAATATTGAAAAAAT
TTTACTTGGAGGCAGTCGTTTGGAGAACTCTCATATTTAAAGAATCATGT
GGACTTCGACAGCAGTCATCTTAACATTATTCGCTTGGATTTGCAATTGT
GAAGGTATGACTTACTCTTCTTCATAATGTATATTTTACTTAAAATGCCG
CGCAACTACCGGTTAATGGGTAACTGAGTAAGCAAGGGTGAAAAATAGAG
AAAAAATACGGACATGTACTGACACGGTTATACCCTTTTCTCGTTATTAT
TGGGACACGCAGTGGCAGCACCGTTGAGAACATATTGATAAGCCTGAAAA
TCACTCAAAAGCAAGAAAAGGAGAGTCTCAGCCGAAACTTTATAATGGTC
TTTATAATACTATCAATGAAAAAGTGTAACATAACTAGACTAGAAGAGTA
CCTATAGCAATAAAAATTTTTAAGCCACTCATACTGCGGTAGACAATATT
TTCGAAACGCGTGATCTACTTTTGTATTGATTTGTTAAAGTTGTGTCAAT
GCACCATAATTAAGGACCAGATCCAATACCGGGACCAGCCCCGAGCAACG
ATGTAAAAATAATAGATAACCAACTACCTCTAGAAGGCACTTCTCCCAAG
AGAACAACCATTGTTTTCCTATTGAAATGAGCACNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNGTGATGAAGTTTAAAGACAATGAACTGCATCTATCTACTTTCT
TTATTTTCAGTACAATGGGAGATGCTTGGCAACAATATCTGTTACGGCGC
ACGCCGCGGAACATACGGAACAATCAAGCTTGAAAAAGAAGGATTTTTAT
TTGCACTTAAATTTGAACACGTAAGCGGTTACTTGACGTGCGATCGTGGA
CGTAACACGTATTATGCAAGCAACTGGGGATGTCACGCTGACGGAGATCG
TAACGGGATCACGAACAAAGACATTGGTACGTTTCTGACGGACGAATCGG
ATGAAATCATTTTTCCCGCTGGAGCTAAAGAATTATCACAGTGGCAAGAA
AATCCATACTACAGATTACCAGGATACAAAGGTAATACATAGTCCGTCCC
TGAATTTATTTTGATATAGGGGATGCGTATCGTGTATGAAATTTCCGTCC
GAGAGTTACTTGGGGTAACAAAAAGTTGCATGAATTTACATAATTTCGTC
ATATCCTATGAAAATGAAGGAGGCCTGGAAAACCCAAGTTATGAAGCCCC
AAGTTATGAAAAACCCGAGACGTCATATTTAGCAATAGAAGACTTCCACT
TTCAAAACAATGTTTTCTGATTTATGTACAGGTGATTCCAAGGACCTCGT
TATGGCCTGTCATTGTTCACCGATGTACGCTCGTGTTGGTCAAGAATTAC
GTATCTGGTACGGCGAAGCACTTTTCAATCGAATGATTCGTTCTCGACGA
TATGACGAACGAGATAATGGTGGTCAACATTGTATCAATATTTACGCCAA
GTTTGGTGGATTATAAGATGTGTGTCACTCCTTAATATTGAGTTTATGTA
TCTGTGTTTTTCTGCGGCGGAGACGGTCAGCTTCTGCTTTGTCTACATCC
TGACTGACTAAGGACGACGGTAAGTCAGTACTTTTACCGTCTTCGATTTT
GCCGGTCAAAGCTTTGGTTTTTTTTCCAAATCGGCCCAGCCACTCAGCCG
TCCTTAATGAAGCAAATACATAAACTCGTTAATATTTTTAGATGGATTTA
GAAGCTATTTTGAACTCTCCATTTTCGTAGTTGAGCAAACCTCAATATTT
GCTTGCTTTGGAGCTGTAATATACACGTTTTTCTTTTTTTAAGAAACACA
CTTTTAAGAAACACGAGGCTCAGAATGTCTAAAAACTAAGAAACATCTAA
GAAACATGCTGAGGCTGAGAATGAGAAAATAACATTTTTTAATTCGGTTT
TTTTAAGAACCTTCCAATCCAGCCTTTCATATAAGGCTGATTATGTCAAA
AAGTTTAGAAACATGTAAGAAACATTTAAGGCTCAAAAGGCCGATTTCTT
AAGAAACATTGAGGCTACTTGGTAAAACTAGTTTCTTAAAAAAAAACGTG
TAACTTTGATACCAAACTCTAATACCTATTATTTGTTTTTTAATGATTTT
TTAATTACTTTTTATTTTTGTTGATTATTTTGTGATATATTTTTATTTTC
TCAAATATAAATAAATTATTACCGCCGTAAGATTTTTCTTAAGAACGGCT
TACCTATAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064209-exon-scaffold_41-1575043694:377129..377332 | TCONS_00064209-exon-scaffold_41-1575043694:377129..377332 | Clytia hemisphaerica | exon |
| TCONS_00064209-exon-scaffold_41-1575043694:375852..376172 | TCONS_00064209-exon-scaffold_41-1575043694:375852..376172 | Clytia hemisphaerica | exon |
| TCONS_00064209-exon-scaffold_41-1575043694:374673..375601 | TCONS_00064209-exon-scaffold_41-1575043694:374673..375601 | Clytia hemisphaerica | exon |
| TCONS_00064209-exon-scaffold_41-1510915933:377129..377332 | TCONS_00064209-exon-scaffold_41-1510915933:377129..377332 | Clytia hemisphaerica | exon |
| TCONS_00064209-exon-scaffold_41-1510915933:375852..376172 | TCONS_00064209-exon-scaffold_41-1510915933:375852..376172 | Clytia hemisphaerica | exon |
| TCONS_00064209-exon-scaffold_41-1510915933:374673..375601 | TCONS_00064209-exon-scaffold_41-1510915933:374673..375601 | Clytia hemisphaerica | exon |
| TCONS_00064209-exon-scaffold_41-1491911889:377129..377332 | TCONS_00064209-exon-scaffold_41-1491911889:377129..377332 | Clytia hemisphaerica | exon |
| TCONS_00064209-exon-scaffold_41-1491911889:375852..376172 | TCONS_00064209-exon-scaffold_41-1491911889:375852..376172 | Clytia hemisphaerica | exon |
| TCONS_00064209-exon-scaffold_41-1491911889:374673..375601 | TCONS_00064209-exon-scaffold_41-1491911889:374673..375601 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_41 | supercontig | scaffold_41:374673..377332 - |
Blast
The following BLAST results are available for this feature:
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