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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064205 ID=TCONS_00064205|Name=TCONS_00064205|organism=Clytia hemisphaerica|type=transcript|length=2281bp
GTGCAACAACACTATGCAACTTGCCTGTCAACAGTATATGTTTTACTTCT
TTGCGGTTTTATTCCAATTAAAAtgcaatttcttgaaaattaaccGACTA
ATCGAAGTGTGAATTGCCCTTTAGATTCCTCATACAatctattttagttt
ttttcatgTTATAAGAATAGAATTATTAAActtataaaatatattatgCT
CCTTCAGTTATTGTGGTTTACACGatttatttaaaatctacacTTATATA
AACCGGTGTCCAAAGTTTCAGACAACAGGACAGCTATTAATACATGCATT
GCCCGAATAATTTACACAGAAAATAATTAAGTAGGGTCTTTTCAGATTTA
AAGTATCATAAGCACTTTAATTGTTTCCTTACAgagtttaaatttcttat
aaaaaataaaaattgtaaatttatttgcAAGGCTGGTCAAAGTAAAATTC
CAACCAATTTCACTTAAAATCGTTGTTTTTGTCTTCTGTATATAGGTAAA
cctcaaaaattttttgaattttcaaaccacaatttgaaatttgctaaGAC
AGGTTGATCATCACTACCTAGGCTCATTAGGAAAAACGAAGAGGACCAAG
CTTGCCGTCaaataatttttgaatgaaTAAGATAATTTATCTAATGGTTG
GATTTTATACCACACTCATCTCAATTTTGCTGACAATGCTTAATCTTCTT
TTCCAGATCAGCGTCTCAAGTCAAAACGTTGTTCCGCAAGTTATTCGCCG
GCAGAAAGGAACGCTACCTCCTGGTTTGAAAGTTCTCGGAAGACAAACTC
TACCACGTGTCACTAACGCACCGGTTTTCACCACACCAAAACCAGGGCCT
GGTCGTGAATGCAAGCAAGGAGCTGATCCAATTACTAAAAAATGTCCGCC
GCCACCTGATAACGCATTTCGTTTCTTTGGAAGGAAAGTTTACAAACCAC
GAAAGGTGAATTCAACGACTCTTACCGCCAAGAAATTGTTTGGGCGTATT
GCCGGGCGgttttggaaaatgaacttgagTATGTTAAGGAATCAACAACG
TAGTCAGAATTTAAAGTAAACAAAGAGATGAATAATTCAGTGATAGTAAC
AAGACATAACGAACCAGCCGGTAAATTGATAAGCTGGCGTCCAGATGCCC
CAAGATGTGTTGGTCGCCCTTATGTTACTCTGAAGTCGATTATTGAAGAG
GAAACTGGTTTTGCCGGTAAAGATTTGTTGACATCCATGTTAGATCgaaa
aaaatggaaagaaaacTTTGGTAATGCTTCACCACACGGATGAATCAAGG
CAAGGCGAGGTAAGTAACAAGAGAAAGCGGCGGATAACATACCCTCACTT
CTAGTGGAGCTGGGATATGAATGGCTGATATTGTTGTTATATCTGGCACC
TCGAAAAGATCTACAATGAATTAGTACGTGGCAAAATCGCTTGAAACGTT
TAAAAAACTGTTGGTTGTTAACACTGGTTTCAAAGCTGGCTACTGCATGT
TAGAATTCATTGCGGTAGGTCTATTTTTTATATCTGTTGgtttttttgat
tgattgaataTAATTAGACTCTATTCGATATTTAAAGAAATCACGAACCA
ATTTAAGTATAATCAATATACATATGGGGCAATGTATAATTCTTGTATGG
GTCCGCCTGTAGGCGTGTAAATTCCTTGCTATAAATAGTCTTTTTACAAC
AGTTTATAGACTTTGCTCAACATTTTTATCTCGGAATTATCATAGAACAC
AAGGAAATATAACGTTGATCAGAGGCTATTCCCTAAAAATACATGAGTTC
CAAAGCTTTTttacacctccttctcacagacccagtagggtATACTAGGA
TATATCCGGGGTGATATTTTGGacgatttttccagtgggaagggttccca
gtgggtttttgagaagggggtgtgttcTTAGCTCTGATATTAGTGCATAT
TGTTGTGAAAAGAGAGCAGAAAGGGTATAGTTTTTATTCTGCTGAACTCC
AGtcccaaaatatttgatttttttaaaacccCTTCTGACAATCCATCTGA
TTGGATTCGCTTTCACTTTGCACGCCTTTCATGGTAAATTCTGACCTTGG
TTGTTCAAATTGCCTTAGTCATTAGCCTCAGATTGTATTGCTCTTATCAA
GGGGAGCTGTTATTCTTTGATCTCGGTTATCATTTAACTTTGTACTAAAT
ATTATTTATGttgtaaatattgaaaatctaaagaaattttatttgtgcta
taattttagattttttttggtaaatttgtAN Run BLAST on NCBI transcript from alignment at scaffold_41:357919..360199- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064205 ID=TCONS_00064205|Name=TCONS_00064205|organism=Clytia hemisphaerica|type=transcript|length=2281bp|location=Sequence derived from alignment at scaffold_41:357919..360199- (Clytia hemisphaerica)
GTGCAACAACACTATGCAACTTGCCTGTCAACAGTATATGTTTTACTTCT
TTGCGGTTTTATTCCAATTAAAATGCAATTTCTTGAAAATTAACCGACTA
ATCGAAGTGTGAATTGCCCTTTAGATTCCTCATACAATCTATTTTAGTTT
TTTTCATGTTATAAGAATAGAATTATTAAACTTATAAAATATATTATGCT
CCTTCAGTTATTGTGGTTTACACGATTTATTTAAAATCTACACTTATATA
AACCGGTGTCCAAAGTTTCAGACAACAGGACAGCTATTAATACATGCATT
GCCCGAATAATTTACACAGAAAATAATTAAGTAGGGTCTTTTCAGATTTA
AAGTATCATAAGCACTTTAATTGTTTCCTTACAGAGTTTAAATTTCTTAT
AAAAAATAAAAATTGTAAATTTATTTGCAAGGCTGGTCAAAGTAAAATTC
CAACCAATTTCACTTAAAATCGTTGTTTTTGTCTTCTGTATATAGGTAAA
CCTCAAAAATTTTTTGAATTTTCAAACCACAATTTGAAATTTGCTAAGAC
AGGTTGATCATCACTACCTAGGCTCATTAGGAAAAACGAAGAGGACCAAG
CTTGCCGTCAAATAATTTTTGAATGAATAAGATAATTTATCTAATGGTTG
GATTTTATACCACACTCATCTCAATTTTGCTGACAATGCTTAATCTTCTT
TTCCAGATCAGCGTCTCAAGTCAAAACGTTGTTCCGCAAGTTATTCGCCG
GCAGAAAGGAACGCTACCTCCTGGTTTGAAAGTTCTCGGAAGACAAACTC
TACCACGTGTCACTAACGCACCGGTTTTCACCACACCAAAACCAGGGCCT
GGTCGTGAATGCAAGCAAGGAGCTGATCCAATTACTAAAAAATGTCCGCC
GCCACCTGATAACGCATTTCGTTTCTTTGGAAGGAAAGTTTACAAACCAC
GAAAGGTGAATTCAACGACTCTTACCGCCAAGAAATTGTTTGGGCGTATT
GCCGGGCGGTTTTGGAAAATGAACTTGAGTATGTTAAGGAATCAACAACG
TAGTCAGAATTTAAAGTAAACAAAGAGATGAATAATTCAGTGATAGTAAC
AAGACATAACGAACCAGCCGGTAAATTGATAAGCTGGCGTCCAGATGCCC
CAAGATGTGTTGGTCGCCCTTATGTTACTCTGAAGTCGATTATTGAAGAG
GAAACTGGTTTTGCCGGTAAAGATTTGTTGACATCCATGTTAGATCGAAA
AAAATGGAAAGAAAACTTTGGTAATGCTTCACCACACGGATGAATCAAGG
CAAGGCGAGGTAAGTAACAAGAGAAAGCGGCGGATAACATACCCTCACTT
CTAGTGGAGCTGGGATATGAATGGCTGATATTGTTGTTATATCTGGCACC
TCGAAAAGATCTACAATGAATTAGTACGTGGCAAAATCGCTTGAAACGTT
TAAAAAACTGTTGGTTGTTAACACTGGTTTCAAAGCTGGCTACTGCATGT
TAGAATTCATTGCGGTAGGTCTATTTTTTATATCTGTTGGTTTTTTTGAT
TGATTGAATATAATTAGACTCTATTCGATATTTAAAGAAATCACGAACCA
ATTTAAGTATAATCAATATACATATGGGGCAATGTATAATTCTTGTATGG
GTCCGCCTGTAGGCGTGTAAATTCCTTGCTATAAATAGTCTTTTTACAAC
AGTTTATAGACTTTGCTCAACATTTTTATCTCGGAATTATCATAGAACAC
AAGGAAATATAACGTTGATCAGAGGCTATTCCCTAAAAATACATGAGTTC
CAAAGCTTTTTTACACCTCCTTCTCACAGACCCAGTAGGGTATACTAGGA
TATATCCGGGGTGATATTTTGGACGATTTTTCCAGTGGGAAGGGTTCCCA
GTGGGTTTTTGAGAAGGGGGTGTGTTCTTAGCTCTGATATTAGTGCATAT
TGTTGTGAAAAGAGAGCAGAAAGGGTATAGTTTTTATTCTGCTGAACTCC
AGTCCCAAAATATTTGATTTTTTTAAAACCCCTTCTGACAATCCATCTGA
TTGGATTCGCTTTCACTTTGCACGCCTTTCATGGTAAATTCTGACCTTGG
TTGTTCAAATTGCCTTAGTCATTAGCCTCAGATTGTATTGCTCTTATCAA
GGGGAGCTGTTATTCTTTGATCTCGGTTATCATTTAACTTTGTACTAAAT
ATTATTTATGTTGTAAATATTGAAAATCTAAAGAAATTTTATTTGTGCTA
TAATTTTAGATTTTTTTTGGTAAATTTGTAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064205-exon-scaffold_41-1575043694:357919..360199 | TCONS_00064205-exon-scaffold_41-1575043694:357919..360199 | Clytia hemisphaerica | exon |
| TCONS_00064205-exon-scaffold_41-1510915933:357919..360199 | TCONS_00064205-exon-scaffold_41-1510915933:357919..360199 | Clytia hemisphaerica | exon |
| TCONS_00064205-exon-scaffold_41-1491911889:357919..360199 | TCONS_00064205-exon-scaffold_41-1491911889:357919..360199 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_41 | supercontig | scaffold_41:357919..360199 - |
Blast
The following BLAST results are available for this feature:
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