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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064200 ID=TCONS_00064200|Name=TCONS_00064200|organism=Clytia hemisphaerica|type=transcript|length=2097bpRun BLAST on NCBI protein sequence of TCONS_00064200-protein >TCONS_00064200-protein ID=TCONS_00064200-protein|Name=TCONS_00064200-protein|organism=Clytia hemisphaerica|type=polypeptide|length=496bp PPGLTTEKTNNSILSDLDQVVASFTSVHTTSQENQQKEQVVRSISHSLQARun BLAST on NCBI transcript from alignment at scaffold_41:224473..230653- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064200 ID=TCONS_00064200|Name=TCONS_00064200|organism=Clytia hemisphaerica|type=transcript|length=6181bp|location=Sequence derived from alignment at scaffold_41:224473..230653- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_41:224473..230653- >TCONS_00064200 ID=TCONS_00064200|Name=TCONS_00064200|organism=Clytia hemisphaerica|type=CDS|length=5964bp|location=Sequence derived from alignment at scaffold_41:224473..230653- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00064200 vs. Swiss-Prot (Human)
Match: OZF (Zinc finger protein OZF OS=Homo sapiens GN=ZNF146 PE=1 SV=2) HSP 1 Score: 162.155 bits (409), Expect = 2.199e-44 Identity = 81/191 (42.41%), Postives = 108/191 (56.54%), Query Frame = 2
Query: 332 PGTCDICGKQFKSTTNIAAHRKLHTEEKKFECPQCGKKFRRKLHLTRHVKSHAGIKGFSCEICDAKFSSKWYMQAHAVIHTGDKPFQCTICEKRFNNKANLKKHKLTHGNQRPYVCNVCGQTYRQSYDLKRHMASHTDPVISFTCLQCGKIFARKSYLRRHLLIHTSERKYECTHCGRKFLQRGQLNFHVK 904
P C +CGK F +N+ H HT EK FEC +CGK F +K ++ +H +H G K F C C FS K + H IHTG+KPF+C C K F K+NL +H+ TH ++P+VC CG+T+ +L H H F C +CG F +K YL +H IHT E+ YEC CG+ F QR L HV+
Sbjct: 15 PFACKVCGKVFSHKSNLTEHEHFHTREKPFECNECGKAFSQKQYVIKHQNTHTGEKLFECNECGKSFSQKENLLTHQKIHTGEKPFECKDCGKAFIQKSNLIRHQRTHTGEKPFVCKECGKTFSGKSNLTEHEKIHIGEK-PFKCSECGTAFGQKKYLIKHQNIHTGEKPYECNECGKAFSQRTSLIVHVR 204 HSP 2 Score: 152.14 bits (383), Expect = 7.657e-41 Identity = 80/193 (41.45%), Postives = 110/193 (56.99%), Query Frame = 2
Query: 332 PGTCDICGKQFKSTTNIAAHRKLHTEEKKFECPQCGKKFRRKLHLTRHVKSHAGIKGFSCEICDAKFSSKWYMQAHAVIHTGDKPFQCTICEKRFNNKANLKKHKLTHGNQRPYVCNVCGQTYRQSYDLKRHMASHTDPVISFTCLQCGKIFARKSYLRRHLLIHTSERKYECTHCGRKFLQRGQLNFHVKNQ 910
P C CGK F +N+ H++ HT EK F C +CGK F K +LT H K H G K F C C F K Y+ H IHTG+KP++C C K F+ + +L H H +PY CNVCG+ + QS L H+ SHT + C +CGK F++ S L HL IHT ++ Y+C+ CG+ F Q+ H+++Q
Sbjct: 99 PFECKDCGKAFIQKSNLIRHQRTHTGEKPFVCKECGKTFSGKSNLTEHEKIHIGEKPFKCSECGTAFGQKKYLIKHQNIHTGEKPYECNECGKAFSQRTSLIVHVRIHSGDKPYECNVCGKAFSQSSSLTVHVRSHTGEK-PYGCNECGKAFSQFSTLALHLRIHTGKKPYQCSECGKAFSQKSH---HIRHQ 287 HSP 3 Score: 144.05 bits (362), Expect = 5.064e-38 Identity = 76/188 (40.43%), Postives = 104/188 (55.32%), Query Frame = 2
Query: 341 CDICGKQFKSTTNIAAHRKLHTEEKKFECPQCGKKFRRKLHLTRHVKSHAGIKGFSCEICDAKFSSKWYMQAHAVIHTGDKPFQCTICEKRFNNKANLKKHKLTHGNQRPYVCNVCGQTYRQSYDLKRHMASHTDPVISFTCLQCGKIFARKSYLRRHLLIHTSERKYECTHCGRKFLQRGQLNFHVK 904
C+ CGK F N+ H+K+HT EK FEC CGK F +K +L RH ++H G K F C+ C FS K + H IH G+KPF+C+ C F K L KH+ H ++PY CN CG+ + Q L H+ H+ + C CGK F++ S L H+ HT E+ Y C CG+ F Q L H++
Sbjct: 74 CNECGKSFSQKENLLTHQKIHTGEKPFECKDCGKAFIQKSNLIRHQRTHTGEKPFVCKECGKTFSGKSNLTEHEKIHIGEKPFKCSECGTAFGQKKYLIKHQNIHTGEKPYECNECGKAFSQRTSLIVHVRIHSGDK-PYECNVCGKAFSQSSSLTVHVRSHTGEKPYGCNECGKAFSQFSTLALHLR 260 HSP 4 Score: 138.272 bits (347), Expect = 5.999e-36 Identity = 75/196 (38.27%), Postives = 108/196 (55.10%), Query Frame = 2
Query: 323 RKIPGTCDICGKQFKSTTNIAAHRKLHTEEKKFECPQCGKKFRRKLHLTRHVKSHAGIKGFSCEICDAKFSSKWYMQAHAVIHTGDKPFQCTICEKRFNNKANLKKHKLTHGNQRPYVCNVCGQTYRQSYDLKRHMASHTDPVISFTCLQCGKIFARKSYLRRHLLIHTSERKYECTHCGRKFLQRGQLNFHVKNQ 910
R+ P C+ CGK F + H+ HT EK FEC +CGK F +K +L H K H G K F C+ C F K + H HTG+KPF C C K F+ K+NL +H+ H ++P+ C+ CG + Q L +H HT + C +CGK F++++ L H+ IH+ ++ YEC CG+ F Q L HV++
Sbjct: 40 REKPFECNECGKAFSQKQYVIKHQNTHTGEKLFECNECGKSFSQKENLLTHQKIHTGEKPFECKDCGKAFIQKSNLIRHQRTHTGEKPFVCKECGKTFSGKSNLTEHEKIHIGEKPFKCSECGTAFGQKKYLIKHQNIHTGEK-PYECNECGKAFSQRTSLIVHVRIHSGDKPYECNVCGKAFSQSSSLTVHVRSH 234 HSP 5 Score: 130.183 bits (326), Expect = 4.142e-33 Identity = 64/166 (38.55%), Postives = 93/166 (56.02%), Query Frame = 2
Query: 332 PGTCDICGKQFKSTTNIAAHRKLHTEEKKFECPQCGKKFRRKLHLTRHVKSHAGIKGFSCEICDAKFSSKWYMQAHAVIHTGDKPFQCTICEKRFNNKANLKKHKLTHGNQRPYVCNVCGQTYRQSYDLKRHMASHTDPVISFTCLQCGKIFARKSYLRRHLLIHT 829
P C CGK F +N+ H K+H EK F+C +CG F +K +L +H H G K + C C FS + + H IH+GDKP++C +C K F+ ++L H +H ++PY CN CG+ + Q L H+ HT + C +CGK F++KS+ RH IHT
Sbjct: 127 PFVCKECGKTFSGKSNLTEHEKIHIGEKPFKCSECGTAFGQKKYLIKHQNIHTGEKPYECNECGKAFSQRTSLIVHVRIHSGDKPYECNVCGKAFSQSSSLTVHVRSHTGEKPYGCNECGKAFSQFSTLALHLRIHTGKK-PYQCSECGKAFSQKSHHIRHQKIHT 291 The following BLAST results are available for this feature:
BLAST of TCONS_00064200 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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