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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064183 ID=TCONS_00064183|Name=TCONS_00064183|organism=Clytia hemisphaerica|type=transcript|length=1735bpRun BLAST on NCBI protein sequence of TCONS_00064183-protein >TCONS_00064183-protein ID=TCONS_00064183-protein|Name=TCONS_00064183-protein|organism=Clytia hemisphaerica|type=polypeptide|length=297bp MLQYHQKHSPFITKAKDEIVLTDAIKEHLSKLQGTLNLAGQQSINSIEPFRun BLAST on NCBI transcript from alignment at scaffold_41:640990..655688+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064183 ID=TCONS_00064183|Name=TCONS_00064183|organism=Clytia hemisphaerica|type=transcript|length=14699bp|location=Sequence derived from alignment at scaffold_41:640990..655688+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_41:640990..655688+ >TCONS_00064183 ID=TCONS_00064183|Name=TCONS_00064183|organism=Clytia hemisphaerica|type=CDS|length=8046bp|location=Sequence derived from alignment at scaffold_41:640990..655688+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00064183 vs. Swiss-Prot (Human)
Match: METL4 (Methyltransferase-like protein 4 OS=Homo sapiens GN=METTL4 PE=2 SV=3) HSP 1 Score: 167.548 bits (423), Expect = 3.743e-45 Identity = 101/321 (31.46%), Postives = 167/321 (52.02%), Query Frame = 1
Query: 367 LNAGELKMLQYHQKHSPFITKAKDEIVLTDAIKEHLSKLQGTLNLAGQQSINSIEPFDELAEGCN-EEGCRKLKDCHILN------------DSNNILTSIFDRKIINRRNKSTIMKYNNKDYVIPKKSSFVVSEFRNWVFQCDSLGEKYDLIVMDPPWENKSAKRKKSYHYLPEHDLKKLPIDKILHNGGLAVVWVTNKQKYLEFVRDVLFPFWEVELFGHWHWVKIGVDGDYITNIYSTQRKPYEPVLIGRKVPKLT--------SCEKVPENRIICSVPLNQHSRKPPLNQILEPFLPRNPRCLEMFARSLTPEWDSW 1266
N GEL ++YH K I ++ I+E L G L ++ +P + C+ E C K LN D++ +F R + N + + ++ + Y++P KSSF++S+ + + + + +D+IV+DPPW+NKS KR Y YL ++++PI K+ L V WVTN+QK+L F+++ L+P W VE+ WHWVKI G+++ + S +KPYE +++GR K + +P++++I SVP HS KPPL ++L+ ++ + LE+FAR+L P W SW
Sbjct: 140 FNQGELDAMEYHTKIRELILDGSLQL-----IQEGLKS--GFLYPLFEKQDKGSKPITLPLDACSLSELCEMAKHLPSLNEMEHQTLQLVEEDTSVTEQDLFLRVVENNSSFTKVITLMGQKYLLPPKSSFLLSDI-SCMQPLLNYRKTFDVIVIDPPWQNKSVKRSNRYSYLSPLQIQQIPIPKLAAPNCLLVTWVTNRQKHLRFIKEELYPSWSVEVVAEWHWVKITNSGEFVFPLDSPHKKPYEGLILGRVQEKTALPLRNADVNVLPIPDHKLIVSVPCTLHSHKPPLAEVLKDYIKPDGEYLELFARNLQPGWTSW 452 The following BLAST results are available for this feature:
BLAST of TCONS_00064183 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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