TCONS_00064172 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064172
Unique NameTCONS_00064172
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2245

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064172 ID=TCONS_00064172|Name=TCONS_00064172|organism=Clytia hemisphaerica|type=transcript|length=2245bp
catgggttgacccgggcgaaggttcattcacttgccaagtgaaccgctgc
gagtgggaatcgaacctcagtcgcctgtgcagtaaccaaggtcaatgacc
actattaTACCACAGCACCTGGTACTGTAAGAAcgcacctgataaatttt
ggcCAGGACAAAAGGCACACCTATACCTCGGAAATTCacccaaaaaggca
aaaaagtgCTAAAATTAGCTGCACTTGACGAGGAAACAATAGCTGGACTC
TGCACTTGAGGTTAAAAAACCGTCTGAActtgaaaacctcaaattttgca
cctgcACTCGACTTTTTCCGAGTTGTGCGCTCTAGATCCCGAGCAAACGT
GAcacactctgcaaactggtTTTCCCCTGACCAGTGGGAACCCTGCTATA
ATCATAAAAACATGTGCAGGCCAGTTCAAACGCAGAGTGGCTTGAAAAAG
TTCTTTGTTGATGAGTTTCATGGTTACATTTAAACAACATAAGATAGTCG
AAAAATTAATACCTTAGGGCCCAATGTGACAGCGACAGTATCAGCAAGAA
GATCAACACCTTTCAACATCAAAGCTCTTGCTTCGGTACctgttttaatt
tcttttggtGCATTTTGAGAGTAAGTGGTACTAAAACAGGCCTGTGCAAA
TCTTGTAGGGGTCTTGGTAGAGCGAAGTAACGGTCTTGCAAGTCTTGTAA
TTCCAGACATTTCAAGGTTAAAGCGATGAGTCGAGAGGATGCCTCCTTTG
TCCTTTGCAGTTTCTGTTCCAAAAGTATTTTGTTCGAAATGACTTGCAGC
CCTGTGAGCATGTGCACATTGTTATTTAAACCCAGGACCAGAACATACCG
GTTTTTTAATGACGCAATGAGAATTGTTAAGGGCAAAACCTATTgaagaa
agcaaaaaggttCTGGTCTGTGAAATTACTTCTAGCGAATATTATGAGGC
AACATTTCTCCAGAAGGTTCTGCCATTAACCCACGTGCTCACTTTTAATC
AAGCTAGAATTTGCTGaccaggtttgttttgattttcccttTGTTAATTA
TGCCGACAGCCATTGTTTCTGTCGTATTCGGTAATTTGGTACAGGTCAGT
AATTTTTACTAACAATGAAAGATTACGCAATTGAAACAAATTCATCAATG
AACTTGAAACTTTTGCAAGAAAAATCGAGGAGAGCTCACAAAAGCAGAAC
GTTTGGGGAAACTATCAGCAGACTTTTATTCTCCTAGGAAAATAATATAT
TCGTCAACGAAAATGTCTGCCTTGAGAAAGTTCATCCCATTGTTCGACAG
AGTACTGGTTCAAAGATTTGTACCTGAAACAtCAACCAAAGGGGGTATCC
TATTGCCAGAGACGAGTGTCAATAAAATTCCAGAAGGTACTGTCGTTGCA
GTTGGACCAGGAGTAAGAAATGAGAACGGTTCAGTCACACCAGTAGCTGT
TCAAGAAGGCGATAAAGTTGCTCTTCCAGAATTTGGCGGAACCAAAATCG
AACTCAATAGCCAGGAATACTTCATTTTCCGTGAACACGAAATCCTTGGA
AAACTCGAAAATTAAAATCCAAAACAAATCACACACTGCATTCACGCTCA
AGGTAGAAAGTTCAGGGTAAAACATGCAAGATTCGCTAAGAAGGAGATAA
CGTTATGACAACCTCGTGTAAGATATACAGAACCagtttttataccaatt
tttaATGAAAGAGAGACTCTTTATTCGAACACTTAAACTCAAATTTATCA
AGACTATTTTTTTCTATGCTTTACAGAttgtaaattttataaaataaaat
tgaaaaataaactaaaaaaatacaaaaatataatatttactACAGCTTGT
TTGTTACTTTCTGTATGCTCTTGCAGGTGTTGCTTTGGATtcaattcaaa
ttctttttaaatattttataaagtatagatatttacaattttcgaaaaaa
tatagtCAAATAATATGGCAACACCCTACTCGATATCTCTGTACTGTATC
GAGAGCGCCTGATCTACTTTTCTTTAAACTCTCCCAATGTAGCTTCTTTT
GATGTTAGGCGAAAATTTTATTACTGCGATGACTTTGCGAGTACCActtc
aaaaaaagattgatcAAAGATGGCTGCTATAGCTGTGTCCAGGGTTTATG
AAGAATGGTTCCTGCACTGTAGTCATTCGAAATTGAGCTAAAATCGGGGT
TGACTTTGTttgttactctcgggtacctaatagccgggggggggg
Run BLAST on NCBI

protein sequence of TCONS_00064172-protein

>TCONS_00064172-protein ID=TCONS_00064172-protein|Name=TCONS_00064172-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
MSALRKFIPLFDRVLVQRFVPETSTKGGILLPETSVNKIPEGTVVAVGPG
VRNENGSVTPVAVQEGDKVALPEFGGTKIELNSQEYFIFREHEILGKLEN
Run BLAST on NCBI

transcript from alignment at scaffold_41:461545..468071+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064172 ID=TCONS_00064172|Name=TCONS_00064172|organism=Clytia hemisphaerica|type=transcript|length=6527bp|location=Sequence derived from alignment at scaffold_41:461545..468071+ (Clytia hemisphaerica)
catgggttgacccgggcgaaggttcattcacttgccaagtgaaccgctgc
gagtgggaatcgaacctcagtcgcctgtgcagtaaccaaggtcaatgacc
actattaTACCACAGCACCTGGTACTGTAAGAAcgcacctgataaatttt
ggcCAGGACAAAAGGCACACCTATACCTCGGAAATTCacccaaaaaggca
aaaaagtgCTAAAATTAGCTGCACTTGACGAGGAAACAATAGCTGGACTC
TGCACTTGAGGTTAAAAAACCGTCTGAActtgaaaacctcaaattttgca
cctgcACTCGACTTTTTCCGAGTTGTGCGCTCTAGATCCCGAGCAAACGT
GAcacactctgcaaactggtTTTCCCCTGACCAGTGGGAACCCTGCTATA
ATCATAAAAACATGTGCAGGCCAGTTCAAACGCAGAGTGGCTTGAAAAAG
TTCTTTGTTGATGAGTTTCATGGTTACATTTAAACAACATAAGATAGTCG
AAAAATTAATACCTTAGGGCCCAATGTGACAGCGACAGTATCAGCAAGAA
GATCAACACCTTTCAACATCAAAGCTCTTGCTTCGGTACctgttttaatt
tcttttggtGCATTTTGAGAGTAAGTGGTACTAAAACAGGCCTGTGCAAA
TCTTGTAGGGGTCTTGGTAGAGCGAAGTAACGGTCTTGCAAGTCTTGTAA
TTCCAGACATTTCAAGGTTAAAGCGATGAGTCGAGAGGATGCCTCCTTTG
TCCTTTGCAGTTTCTGTTCCAAAAGTATTTTGTTCGAAATGACTTGCAGC
CCTGTGAGCATGTGCACATTGTTATTTAAACCCAGGACCAGAACATACCG
GTTTTTTAATGACGCAATGAGAATTGTTAAGGGCAAAACCTATTgaagaa
agcaaaaaggttCTGGTCTGTGAAATTACTTCTAGCGAATATTATGAGGC
AACATTTCTCCAGAAGGTTCTGCCATTAACCCACGTGCTCACTTTTAATC
AAGCTAGAATTTGCTGaccaggtttgttttgattttcccttTGTTAATTA
TGCCGACAGCCATTGTTTCTGTCGTATTCGGTAATTTGGTACAGGTCAGT
AATTTTTACTAACAATGAAAGATTACGCAATTGAAACAAATTCATCAATG
AACTTGAAACTTTTGCAAGAAAAATCGAGGAGAGCTCACAAAAGCAGAAC
GTTTGGGGAAACTATCAGCAGACTTTTATTCTCCTAGGAAAATAATATAT
TCGTCAACGAAAATGGTATGTTTTTTCAAATTAACAGTGATTTTTATCTT
AGTTCTTTACCTGTTTTGGGATACACGAGCATGtagcttttgaatttatt
ttcttgaaaaatccaaCAGCAAAGCCTGCAGACCCAGTATgataatgggc
cattccagaatttgtctgtaacaggggtcGGATGACACAGGATTTcagag
ggcaaaagttttcaccaaattcgaaatttctataaggtgagagaagaaaa
tgtatgaatttccaaggcaattgaatttaaaaaaggcaagaaagagtgga
atttccgatgcattttgcaaaagtacatggattttcatcggaatttccga
ccaccactggaaaagaaaaattatttctgaggctagaaaaaatttaaaag
tgcaaattgtgaataaaattttggatagtagtaaaagtttgaaaatacac
cgtttaggagtctcgctatctccACCGTGTTCCACCGTAAAAAcagtagg
taaaaatgcgctcTTTAGtatactgtggaaggttagaggaatgtaaacat
tgtcaatttttttctttcctttaaagagaataatagtttagatatttgaa
catgatatcaatgataattttatggatctcctgaaaatttcacaaaaatt
catctagaggaaaagaagttatgattaaaagaaGTTCTTTACCTACCTTT
TCTCTGCTAGGTTTCCTTACGAGAACCGGAATTTTGCCTAGCGTTTATTT
TTACGAGAAAGAGCGGTcgtttaaatcaaaacaatggaaaattgtttgga
cgtgtgcgcagtcgacactactaAATGGTGTATTACCgagagattgggta
acttgcattagtggaggctaacatgcatagccctcaaatgaaggACCttg
ctggtcattaaaatacaaagttaaataaaaacaaacatggTAATGGTAGA
GTAAAgatgcgagcggagctgcgtagttgtattttaatgaccagtcaggt
cattcatttgagggctatgcatgttagcctccactgatgcaagttaccca
atctcacggtagatCAGTGATGGAGGTAAAAGATTAAGCTTGTTACATTC
TCTGTAAATACACCTTTCCGGTCAAACAACTTTCCTGTAATTCCAACTTC
TCAGTTGTGGCCTGGGAAGACGCGTGCTCCACTGCCGTGTATCGtgagtt
ggtctaatgttgacattcCTAATTCCGgaacccttctttagagataggaa
taattggAAGGTCGAAATCGCTGCCAATAGAAACTATTTTCTTTGCTAGG
TTATCAGAGAGGAAAAAACCTTTCGTCTATGACTAGAGGGTGTCAATCAG
GTGAGGATTATACTCTAAATAAAAGAATACCCAAATTAGAAGACTACctt
ttttaggagatttttagTCTCCTACTTAAGAGAATCATACCTAAACTAGG
AGAATTTGGCACATTTGACTGATTTGCTTTAAGGTTAACTATTTgcgtaa
tatgaaaatgtgaCGACATGAAAGATATGTTTCACTGACTCCAATGactc
aaaaaccaaaaaaacaccTTTTTATTCGTTTTCAATTGTCAAAAAACCAC
AAAATTTGACTTATTACTGCTGacaaaaccaaatcaaaatgaaagatagt
gaCCTCCACAACACCTTTTTCTAAACATAAGCAGAATTCAACCAAATTTT
ATCATGAATAGAAAAAAACACATTAAAATTTGAGTGGATTCTGTTCAACA
TAACTTAAGGAAAGCTAAAAAACAACTTTCCTTAAGGAAACACAGCCGAA
AACAGGTTTGTTTACCTACCCACAGACCAAACAGTGGAGAGCAACAAAAT
ATGTGGGAGCATTTTGTTGCTCATCACTGTTGGACTCGTGAGGTAAATAA
ACCTGGTGTGTATAACTATAGATCATCAGGTCTGGGAAGgttagtttttt
ttaacttttctttaATAAGCTTGTCAAACAGAATCATCCTAAATTAGATC
ACTTTTCATGCAAGCATCCAGTacttaaaatcactaaaattgtTTTGGTA
AAAACAACCCTTTTTGGAAGGAAACATTATAGAAAGTACTATTTTTCGCG
CACTGCTGCTCTACCTTAAAAAATATGGttttcaaatcttattttggTAA
AGAACTTTGGTCATACGCACAATAACTTTGGTCATACGCATGTTCCACAA
CCAAGTCAAGTCTAATTGACTAACTACCTGATTCCTCATCGCACGATTTA
GTAGTTGGGAATTagagggggttggaaattttggggtTGGGTTCCCTGAC
CAAAGACAATGGGACTAAAGTTCCCATACCAAGAGATCAACTGAAATTAC
AAGGTAATCAATCTGCTTTCCATCTAGGTCCCAGGATACTGTTGTTTTAC
ATAAGATCTCCTTTCCTGCACTAAGATTCCACTGCCACTTTTCTACCAGA
AAAAGACCATAACTCAGGGTAGTTGAAGAATGAGACTCGGAAAATTGGGC
TGTTTTgtaagtaaacacaagattttccgtacctttagaaGATGACTCCA
ATCTCTTGCCAGCTTTCtcgggaaaaatagaaaaaaatcctGGTAAAGTC
AGTAGAATCTTAGTACGGGAAAGGGAATATCATGCAAAACTTATCTACTT
AACTACTTAGAGATTTTAAGAGTTTTGCATATATAAGGTCAAAAAAGAGA
ACCTGAGAACAAGAGGAGGGTTGAATAAAAAAGAGGGTTGCCATTTTTAA
GGGGGGCTTGATACCTTTGCCCACTATGCATTTGGCAACTGATGTAAAAA
TTCATATACATTTTCTACCTTTTAGGTATTTCTGAAACTtgtaaaaacaa
atttaataaCATTTCATTATTTACTGTATTTTATATTAGTATAAAAGAAT
TATGTAGCCTTTTTATGCAGGACCTCTAAGATAACAGTTTTAAAAAATAC
AAGGTTctgatttccaaaatttaaaggattttgtCGTGTTTTCCAAAATT
CAGAGTAAAAAATGTTTTANAAGGTTctgatttccaaaatttaaaggatt
ttgtCGTGTTTTCCAAAATTCAGagtaaaaaatgttttagtttcattttt
cacccatccatatttttctattgtctttgaGCCATTCATTTTGCCCGAAA
TTAAGATTATCTCCGTTTCAAAGATTTCAATGTAAAAATAGGACTCAGAT
ACCGAACCaattttaaaatctcaaaaaactgAATAGATTTTGTATGAGAT
CACTATATCACACTTACTATATGTATGTATATTATTTATGCTACAGCTGT
TGAATTATCCGgtttaaaaatgcttaaaaaaacTTCTTTCGTATAATAGT
AACATTTCTCTTGTTATTTTAGTCTGCCTTGAGAAAGTTCATCCCATTGT
TCGACAGAGTACTGGTTCAAAGATTTGTACCTGAAACAGTAAGTTATTAT
GAGATGAGTAAATGCTACTTGGTCGAGCTTTCTTGGTTTAATTTCAATTC
TACCTCTCTCATCTTCTCTCCCTGGTTTTAAAATTGATATGAATTTAGGG
TTTCTGGTATTGTATTCTTATCTTCTtgcaattttcgggtcagggatCAT
TTTGgatcattttctgaaaaaagttgCTTTGACTACCCCTAATATTATAC
CTACTTTACACTATTTGGGTAAAGGGCCATCATCTACCATGGTTATGAGG
TAGTGAAGAAAATTAGCCAATTTGAAGGATCCATCGTTAGCAATTTGGTT
ActtattgaaaaacttttgctCGTGAATTCttattgtataattttttttc
tccatagtCAACCAAAGGGGGTATCCTATTGCCAGAGACGAGTGTCAATA
AAATTCCAGAAGGTACTGTCGTTGCAGTTGGACCAGGAGTAAGAAATGAG
GTGAGTCTTTATTTATGTGATGTCTAAACAGCAGAAAATtgcagcaaaaa
tattttatggtTTTCCGTAACTGAATTCAATTTGAAGAAGTTAAGACACT
TAAGAATTTTAATTTGCAAAGTtacattatttttgttttgggtTATGCTT
CAATTTCGAATATTCTATCATTTGTGCTTCTTTACAGAACGGTTCAGTCA
CACCAGTAGCTGTTCAAGAAGGCGATAAAGTTGCTCTTCCAGAATTTGGC
GGAACCAAAATCGAACTCAATAGCCAGGTAAATATTGTCAGAAATGTGAT
AAGAATCGGCAATAGCtcgtcttttttttcttctcgcTTTTCCGTTTTCT
CTGTAACTTTTGAAAAGTCAAGGTTTTTTGAAATGCCTCTTTGTGTGGCT
ATGCAATTTAAATTACGATTTTATCAAAGATTAGGTTCTCTCTgacaatt
ttttgactttcgGGACTCTATATTAACATTAAGTCATTTGCTTATGCCAC
GGTCGAATTGAATTATCGGTATTCAATACTAGTTGTGCTTTTGATAAcga
cttcaaaaactttgacaaTCAATTTGATCACCTATCATttatttagaatt
tagaaagttGCCCAACATATTTTATCCTTTTGTTTTTCCTCGTCAGGAAT
ACTTCATTTTCCGTGAACACGAAATCCTTGGAAAACTCGAAAATTAAAAT
CCAAAACAAATCACACACTGCATTCACGCTCAAGGTAGAAAGTTCAGGGT
AAAACATGCAAGATTCGCTAAGAAGGAGATAACGTTATGACAACCTCGTG
TAAGATATACAGAACCagtttttataccaatttttaATGAAAGAGAGACT
CTTTATTCGAACACTTAAACTCAAATTTATCAAGACTATTTTTTTCTATG
CTTTACAGAttgtaaattttataaaataaaattgaaaaataaactaaaaa
aatacaaaaatataatatttactACAGCTTGTTTGTTACTTTCTGTATGC
TCTTGCAGGTGTTGCTTTGGATtcaattcaaattctttttaaatatttta
taaagtatagatatttacaattttcgaaaaaatatagtCAAATAATATGG
CAACACCCTACTCGATATCTCTGTACTGTATCGAGAGCGCCTGATCTACT
TTTCTTTAAACTCTCCCAATGTAGCTTCTTTTGATGTTAGGCGAAAATTT
TATTACTGCGATGACTTTGCGAGTACCActtcaaaaaaagattgatcAAA
GATGGCTGCTATAGCTGTGTCCAGGGTTTATGAAGAATGGTTCCTGCACT
GTAGTCATTCGAAATTGAGCTAAAATCGGGGTTGACTTTGTttgttactc
tcgggtacctaatagccgggggggggg

Coding sequence (CDS) from alignment at scaffold_41:461545..468071+

>TCONS_00064172 ID=TCONS_00064172|Name=TCONS_00064172|organism=Clytia hemisphaerica|type=CDS|length=1515bp|location=Sequence derived from alignment at scaffold_41:461545..468071+ (Clytia hemisphaerica)
ATGTCTGCCTTGAGAAAGTTCATCCCATTGTTCGACAGAGTACTGGTTCA
AAGATTTGTACCTGAAACAtCAACCAAAGGGGGTATCCTATTGCCAGAGA
CGAGTGTCAATAAAATTCCAGAAGGTACTGTCGTTGCAGTTGGACCAGGA
GTAAGAAATGAGAACGGTTCAGTCACACCAGTAGCTGTTCAAGAAGGCGA
TAAAGTTGCTCTTCCAGAATTTGGCGGAACCAAAATCGAACTCAATAGCC
AGGAATACTTCATTTTCCGTGAACACGAAATCCTTGGAAAACTCGAAAAT
TAAATGTCTGCCTTGAGAAAGTTCATCCCATTGTTCGACAGAGTACTGGT
TCAAAGATTTGTACCTGAAACAtCAACCAAAGGGGGTATCCTATTGCCAG
AGACGAGTGTCAATAAAATTCCAGAAGGTACTGTCGTTGCAGTTGGACCA
GGAGTAAGAAATGAGAACGGTTCAGTCACACCAGTAGCTGTTCAAGAAGG
CGATAAAGTTGCTCTTCCAGAATTTGGCGGAACCAAAATCGAACTCAATA
GCCAGGAATACTTCATTTTCCGTGAACACGAAATCCTTGGAAAACTCGAA
AATTAAATGTCTGCCTTGAGAAAGTTCATCCCATTGTTCGACAGAGTACT
GGTTCAAAGATTTGTACCTGAAACAtCAACCAAAGGGGGTATCCTATTGC
CAGAGACGAGTGTCAATAAAATTCCAGAAGGTACTGTCGTTGCAGTTGGA
CCAGGAGTAAGAAATGAGAACGGTTCAGTCACACCAGTAGCTGTTCAAGA
AGGCGATAAAGTTGCTCTTCCAGAATTTGGCGGAACCAAAATCGAACTCA
ATAGCCAGGAATACTTCATTTTCCGTGAACACGAAATCCTTGGAAAACTC
GAAAATTAAATGTCTGCCTTGAGAAAGTTCATCCCATTGTTCGACAGAGT
ACTGGTTCAAAGATTTGTACCTGAAACAtCAACCAAAGGGGGTATCCTAT
TGCCAGAGACGAGTGTCAATAAAATTCCAGAAGGTACTGTCGTTGCAGTT
GGACCAGGAGTAAGAAATGAGAACGGTTCAGTCACACCAGTAGCTGTTCA
AGAAGGCGATAAAGTTGCTCTTCCAGAATTTGGCGGAACCAAAATCGAAC
TCAATAGCCAGGAATACTTCATTTTCCGTGAACACGAAATCCTTGGAAAA
CTCGAAAATTAAATGTCTGCCTTGAGAAAGTTCATCCCATTGTTCGACAG
AGTACTGGTTCAAAGATTTGTACCTGAAACAtCAACCAAAGGGGGTATCC
TATTGCCAGAGACGAGTGTCAATAAAATTCCAGAAGGTACTGTCGTTGCA
GTTGGACCAGGAGTAAGAAATGAGAACGGTTCAGTCACACCAGTAGCTGT
TCAAGAAGGCGATAAAGTTGCTCTTCCAGAATTTGGCGGAACCAAAATCG
AACTCAATAGCCAGGAATACTTCATTTTCCGTGAACACGAAATCCTTGGA
AAACTCGAAAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040238XLOC_040238Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064172-exon-scaffold_41-1491911889:461545..462809TCONS_00064172-exon-scaffold_41-1491911889:461545..462809Clytia hemisphaericaexon
TCONS_00064172-exon-scaffold_41-1510915933:461545..462809TCONS_00064172-exon-scaffold_41-1510915933:461545..462809Clytia hemisphaericaexon
TCONS_00064172-exon-scaffold_41-1575043694:461545..462809TCONS_00064172-exon-scaffold_41-1575043694:461545..462809Clytia hemisphaericaexon
TCONS_00064172-exon-scaffold_41-1491911889:466167..466232TCONS_00064172-exon-scaffold_41-1491911889:466167..466232Clytia hemisphaericaexon
TCONS_00064172-exon-scaffold_41-1510915933:466167..466232TCONS_00064172-exon-scaffold_41-1510915933:466167..466232Clytia hemisphaericaexon
TCONS_00064172-exon-scaffold_41-1575043694:466167..466232TCONS_00064172-exon-scaffold_41-1575043694:466167..466232Clytia hemisphaericaexon
TCONS_00064172-exon-scaffold_41-1491911889:466602..466694TCONS_00064172-exon-scaffold_41-1491911889:466602..466694Clytia hemisphaericaexon
TCONS_00064172-exon-scaffold_41-1510915933:466602..466694TCONS_00064172-exon-scaffold_41-1510915933:466602..466694Clytia hemisphaericaexon
TCONS_00064172-exon-scaffold_41-1575043694:466602..466694TCONS_00064172-exon-scaffold_41-1575043694:466602..466694Clytia hemisphaericaexon
TCONS_00064172-exon-scaffold_41-1491911889:466882..466971TCONS_00064172-exon-scaffold_41-1491911889:466882..466971Clytia hemisphaericaexon
TCONS_00064172-exon-scaffold_41-1510915933:466882..466971TCONS_00064172-exon-scaffold_41-1510915933:466882..466971Clytia hemisphaericaexon
TCONS_00064172-exon-scaffold_41-1575043694:466882..466971TCONS_00064172-exon-scaffold_41-1575043694:466882..466971Clytia hemisphaericaexon
TCONS_00064172-exon-scaffold_41-1491911889:467341..468071TCONS_00064172-exon-scaffold_41-1491911889:467341..468071Clytia hemisphaericaexon
TCONS_00064172-exon-scaffold_41-1510915933:467341..468071TCONS_00064172-exon-scaffold_41-1510915933:467341..468071Clytia hemisphaericaexon
TCONS_00064172-exon-scaffold_41-1575043694:467341..468071TCONS_00064172-exon-scaffold_41-1575043694:467341..468071Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064172-proteinTCONS_00064172-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_41supercontigscaffold_41:461545..468071 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
146.879	144.968	37.6837	28.3832	165.542	126.565	104.224	112.302	79.7775	61.7692	53.7248	76.0077	79.9515	94.3534	88.7049	100.893	133.299	102.905	18.2115	21.125	79.2103	82.4674	120.191	104.735	59.7175	67.4665	68.166	44.5942	91.0919	77.937
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020818Chaperonin_GroES
IPR018369Chaprnonin_Cpn10_CS
IPR011032GroES-like
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0006457protein folding
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006457 protein folding
cellular_component GO:0005737 cytoplasm
molecular_function GO:0005524 ATP binding
Blast
[Close]
BLAST of TCONS_00064172 vs. Swiss-Prot (Human)
Match: CH10 (10 kDa heat shock protein, mitochondrial OS=Homo sapiens GN=HSPE1 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 9.848e-28
Identity = 56/96 (58.33%), Postives = 74/96 (77.08%), Query Frame = 3 
Query: 1266 SALRKFIPLFDRVLVQRFVPETSTKGGILLPETSVNKIPEGTVVAVGPGVRNENGSVTPVAVQEGDKVALPEFGGTKIELNSQEYFIFREHEILGK 1553
             A RKF+PLFDRVLV+R   ET TKGGI+LPE S  K+ + TVVAVG G + + G + PV+V+ GDKV LPE+GGTK+ L+ ++YF+FR+ +ILGK
Sbjct:    4 QAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDKVLLPEYGGTKVVLDDKDYFLFRDGDILGK 99
The following BLAST results are available for this feature:
BLAST of TCONS_00064172 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CH109.848e-2858.3310 kDa heat shock protein, mitochondrial OS=Homo s... [more]
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