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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064170 ID=TCONS_00064170|Name=TCONS_00064170|organism=Clytia hemisphaerica|type=transcript|length=1580bp
ATTAAGGAAGGTGAGCATAGAGAAGGTCTAGCTAACATCAAATTTTCAGT
GTAAACCATACGCCACTAAGGTTTGATAGGTGTATACTGTTTAGGGTCAA
CATAAAGTGAACATGAATAAAAAATCCTATCCCAAACTATGAAACTTCTT
ATGCACGCACGTCGAAATTAAAAAGATATACTAAGCAAGTTGTTTTCAAT
GTTTTACCATTTTATAACAATAAAAATCCATGACGTTCGCAGAAAAATAC
GCGAAAGCTTGGCAATACTTAGCGTATCGAGCACctaaacaaacaacaaa
aaccGAGATTTCTCATTctgtgacgtctagtatagttACCTAGTGATAAA
TAATAACATCTTGTCATAAAattaaattgacgtcaaatataaaaaatcaa
taacaaaTTCGTCTTCTTTCGAATCAATAGAAATCATAGTATCACTTACC
ATCTCAAAGAACGGTACTATAATCTCTACTCATCTCTCGGCTTGTCAACG
GCTCTACACCATCTGCTCTTCTCATCCCACTCAAAATGTCttctgaaatt
tcaaattactcCAGTGCATTGGGACATATTCCACGTCAAAGTATTGTTGA
TCGCTCCACGTATTTCCGTGTTGGTAATTCTGAATCGAAAAGACAACAAT
ATGTTGAAACGGAAGCCGTACAAGATTTCCGTCACGGCGAACGATTGGTT
GGCGTTCATTCTGAACTGCAACATGTATTCAGAGCTAGCGAGGTTAATAA
CTCAGTTACCAAAGAAAATGCTATACACAAACATAAACAAGCCATTCAAT
GCGTGCACGAAGAAATGCGACGAACATCCATCGATCAGCGTGTTAAACGA
GAATTGAGCCGAGCCACCGAGTTCGAACGAAAGCGACGAATCTCCATTGT
CGAGGATGCTTTGGAGAATCCTTGTAGTGAGACTTGTAAAAATATGCAAG
CCACAAATAATCGATTGATTGAAGTACATCAAAGTTTAAAAGAAATCTTT
AAGAGAAGGGAGTCCATCAAAGCAGCGAAAGAGAGAGAAGTAAGGATCGG
AGTGGAAGAATCCAAAGAAATGTTACTACAACAATTACGTAGACGATCAG
CGTATACGTCCTTAAAAGATGACATCGAAAATGAACATGTCCAACAGATC
AGAGACTTTCATGAAAGATATCAGAATGAAGATTTTTGTCGCACTGATCA
ACAGTTAATGGATGTACAAGAAGAAATGATTAAACTTTACAGGAAAAACG
AGGGTATGCGACAAGAAAAGGAAAGACAACAAATGGAGAATGCCAAACAA
AGGAAATCAATTGTGGAAGAAGAATTGGTACGTCATTTCAACAGAAAATG
TGCTAAAACCATGTCAAACATTGAATGGGGAAGTGTGCGCAGAAGTAACA
CTGACTCGATGGCACTGGCTCGAGGTCAAGGTcgccaaataaaaaagaac
aaaaagactGCCGTCGGTTTTCGAAAACTTCAAGCCATACATTCGGCATT
GATTTTAAGAACCATTGTAAGAAACAAAACCAAAGAatgatttcttttat
attttctgaaagatcgtgacaaagaaatta Run BLAST on NCBI protein sequence of TCONS_00064170-protein >TCONS_00064170-protein ID=TCONS_00064170-protein|Name=TCONS_00064170-protein|organism=Clytia hemisphaerica|type=polypeptide|length=334bp
MSSEISNYSSALGHIPRQSIVDRSTYFRVGNSESKRQQYVETEAVQDFRH
GERLVGVHSELQHVFRASEVNNSVTKENAIHKHKQAIQCVHEEMRRTSID
QRVKRELSRATEFERKRRISIVEDALENPCSETCKNMQATNNRLIEVHQS
LKEIFKRRESIKAAKEREVRIGVEESKEMLLQQLRRRSAYTSLKDDIENE
HVQQIRDFHERYQNEDFCRTDQQLMDVQEEMIKLYRKNEGMRQEKERQQM
ENAKQRKSIVEEELVRHFNRKCAKTMSNIEWGSVRRSNTDSMALARGQGR
QIKKNKKTAVGFRKLQAIHSALILRTIVRNKTKE Run BLAST on NCBI transcript from alignment at scaffold_41:437356..440878+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064170 ID=TCONS_00064170|Name=TCONS_00064170|organism=Clytia hemisphaerica|type=transcript|length=3523bp|location=Sequence derived from alignment at scaffold_41:437356..440878+ (Clytia hemisphaerica)
ATTAAGGAAGGTGAGCATAGAGAAGGTCTAGCTAACATCAAATTTTCAGT
GTAAACCATACGCCACTAAGGTTTGATAGGTGTATACTGTTTAGGGTCAA
CATAAAGTGAACATGAATAAAAAATCCTATCCCAAACTATGAAACTTCTT
ATGCACGCACGTCGAAATTAAAAAGATATACTAAGCAAGTTGTTTTCAAT
GTTTTACCATTTTATAACAATAAAAATCCATGACGTTCGCAGAAAAATAC
GCGAAAGCTTGGCAATACTTAGCGTATCGAGCACctaaacaaacaacaaa
aaccGAGATTTCTCATTctgtgacgtctagtatagttACCTAGTGATAAA
TAATAACATCTTGTCATAAAattaaattgacgtcaaatataaaaaatcaa
taacaaaTTCGTCTTCTTTCGAATCAATAGAAATCATAGTATCACTTACC
ATCTCAAAGAACGGTACTATAATCTCTACTCATCTCTCGGCTTGTCAACG
GCTCTACACCATCTGCTCTTCTCATCCCACTCAAAATGTCttctgaaatt
tcaaattactcCAGTGCATTGGGACATATTCCACGTCAAAGTATTGTTGA
TCGCTCCACGTATTTCCGTGTTGGTAATTCTGAATCGAAAAGACAACAAT
ATGTTGAAACGGAAGCCGTACAAGATTTCCGTCACGGCGAACGATTGGTT
GGCGTTCATTCTGAACTGCAACATGTATTCAGAGCTAGCGAGGTAAAATT
GGAAATAAATTTTGTGTATGTAAATGTTTAGTTATATGCAAATTCCGCCA
GTCATTATTGATTTCAACTGATGCGCAAATTATTTAGCTCATTTAGCAAT
TTTCTGTTTTGGATCTAGGGTCTTGAGACCACAAGGTTTAAAGATATGTA
ATAATGCAATGCATATCCATGAGAATAGAATATAGTTAACTATCTATAAC
GATCTTCTCGGCATTTGAATTATGGCAAATTTACAGGGTGTTCCATTCTC
TAAATATATCAAACAGTAAGATATCTATATAAATTATGACGCCGCTCTGC
AAAATTTGGTATTTAGCACTCTGCTGAATCTAAAGTCAATTGCACAATAT
TATATAACATATCTAAATGTCATATGTTTACCAAAGGTTAATAACTCAGT
TACCAAAGAAAATGCTATACACAAACATAAACAAGCCATTCAATGCGTGC
ACGAAGAAATGCGACGAACATCCATCGATCAGCGTGTTAAACGAGAATTG
AGCCGAGCCACCGAGTTCGAACGAAAGCGACGAATCTCCATTGTCGAGGA
TGCTTTGGAGAATCCTTGTAGTGAGACTTGTAAAAATATGCAAGCCACAA
ATAATCGATTGATTGAAGTACATCAAAGTTTAAAAGAAATCTTTAAGAGA
AGGGAGGTAAGTTTTTAATCAAGTTTTCTGGGTATAGGAATGAATCTgaa
caaccctgtctcacagccccggtggaagttttttttcttcaatcattggg
gataaaaatccctattgaaatctcaatggggatagagattttttgtttca
aggttaaaaaatccagtgtggatggttttggagcgcaatttttagacaaa
gattttcgagtggggatgagattaaagtcaatttcccagtggggctgaaa
ttccagggtatttttcccaccggggaccaaatatttaccaaattttccag
tgggactggGGTGTATCTGAGGTTTCTTTGCACTACGTGTGTATGAAAAA
AGCTTCTATAAGAGATCattgtgatttttaaaagacACGCCTGAGAGCTG
CTAATAGAAAGATGGAACAAATTTGACTTCACGAgatgtgattttgaaat
ttgcttTCAAGATGTGTTAGCTCTGTTAGCCATCATTTTTCCAAATAGCT
TTAtaatatacaccttttcgaccgtagtcatgcagtcaggcgcgtgccac
tacaccctaaactcgatccaattcttattttagacttttttctaTTGCTG
TTAGGCGCGAGAAAAAAAACTgtgacggttttagggtggtaaaatagaca
aaaaaatgcccgcgcggcaatcgGCGACGGTTTTAGGGttgtaaaatgga
caaaaaagtgcccgcgcggcaatcggcggctacggtcgaaagggtgtatt
gtaaaaaaaatgaaacaaatttaCTTGACTTATTCAATTCTAGTCCATCA
AAGCAGCGAAAGAGAGAGAAGTAAGGATCGGAGTGGAAGAATCCAAAGAA
ATGTTACTACAACAATTACGTAGACGATCAGCGTATACGTCCTTAAAAGA
TGACATCGAAAATGAACATGTCCAACAGATCAGAGACTTTCATGAAAGAT
ATCAGAATGAAGATTTTTGTCGCACTGATCAACAGTTAATGGATGTACAA
GAAGAAATGATTAAACTTTACAGGAAAAACGAGGTAATGTTCTGCATTCT
TTGGCTACTTTTGGTGGAGCAACAGAGTCTGAccccttttctatttgttt
tAAATCAGGCCTCATCCATAACGTACGCAAgaatttccaaatatttgaca
cccaTTTCCCTCTTGCATTCAGAGAAGAATATGAGTtacgtcatttaaac
aatagatgtatgCGTTTGctaaccccctctcccccttcatCGCGTACGTA
TTATATGTATGCCTCGTCAGGGAGATTGAATGCCGATAGGGCGGAGCGTC
TCAAATTGTCTCAATAATCTAAGTAATTCATTGGCTGAATTGGATGCAGC
AGGGGGATAAAACCCACAATTCATGGTTTGAAAGGCAAATACTCGAACAC
CAGCTATCAGCAGTGGATACTTTtatcggattaaatttcacgaaattaaa
tttcgcgaataagcttgaaaacagctgaaaaatagcTATTTTTGGCCACA
AATAGAGACTTTTTCCGCCGAAAAtgcgaattaaaaaattttatggtgga
tttaatttcgcgagtcagaaaTCTCACGtgttttcgcgagttttaatttc
acgaaaatggcaaaaaattcgcgaaatttaatctcgcgaaagttaatccg
ttTCAAGTAGTAGGGTTAAGCTGTCTTTTAAAGTCATACAGATAGAAAAC
CAATCGGTGTAGTGGATTTTACTTTGAATTGAACATTGTGAGAAACCTAG
CCATGGTTACTGtattttaattcaaaatgttCTTTCAACAACCAGGGTAT
GCGACAAGAAAAGGAAAGACAACAAATGGAGAATGCCAAACAAAGGAAAT
CAATTGTGGAAGAAGAATTGGTACGTCATTTCAACAGAAAATGTGCTAAA
ACCATGTCAAACATTGAATGGGGAAGTGTGCGCAGAAGTAACACTGACTC
GATGGCACTGGCTCGAGGTCAAGGTcgccaaataaaaaagaacaaaaaga
ctGCCGTCGGTTTTCGAAAACTTCAAGCCATACATTCGGCATTGATTTTA
AGAACCATTGTAAGAAACAAAACCAAAGAatgatttcttttatattttct
gaaagatcgtgacaaagaaatta Coding sequence (CDS) from alignment at scaffold_41:437356..440878+ >TCONS_00064170 ID=TCONS_00064170|Name=TCONS_00064170|organism=Clytia hemisphaerica|type=CDS|length=4020bp|location=Sequence derived from alignment at scaffold_41:437356..440878+ (Clytia hemisphaerica)
ATGTCttctgaaatttcaaattactcCAGTGCATTGGGACATATTCCACG
TCAAAGTATTGTTGATCGCTCCACGTATTTCCGTGTTGGTAATTCTGAAT
CGAAAAGACAACAATATGTTGAAACGGAAGCCGTACAAGATTTCCGTCAC
GGCGAACGATTGGTTGGCGTTCATTCTGAACTGCAACATGTATTCAGAGC
TAGCGAGGTTAATAACTCAGTTACCAAAGAAAATGCTATACACAAACATA
AACAAGCCATTCAATGCGTGCACGAAGAAATGCGACGAACATCCATCGAT
CAGCGTGTTAAACGAGAATTGAGCCGAGCCACCGAGTTCGAACGAAAGCG
ACGAATCTCCATTGTCGAGGATGCTTTGGAGAATCCTTGTAGTGAGACTT
GTAAAAATATGCAAGCCACAAATAATCGATTGATTGAAGTACATCAAAGT
TTAAAAGAAATCTTTAAGAGAAGGGAGTCCATCAAAGCAGCGAAAGAGAG
AGAAGTAAGGATCGGAGTGGAAGAATCCAAAGAAATGTTACTACAACAAT
TACGTAGACGATCAGCGTATACGTCCTTAAAAGATGACATCGAAAATGAA
CATGTCCAACAGATCAGAGACTTTCATGAAAGATATCAGAATGAAGATTT
TTGTCGCACTGATCAACAGTTAATGGATGTACAAGAAGAAATGATTAAAC
TTTACAGGAAAAACGAGGGTATGCGACAAGAAAAGGAAAGACAACAAATG
GAGAATGCCAAACAAAGGAAATCAATTGTGGAAGAAGAATTGGTACGTCA
TTTCAACAGAAAATGTGCTAAAACCATGTCAAACATTGAATGGGGAAGTG
TGCGCAGAAGTAACACTGACTCGATGGCACTGGCTCGAGGTCAAGGTcgc
caaataaaaaagaacaaaaagactGCCGTCGGTTTTCGAAAACTTCAAGC
CATACATTCGGCATTGATTTTAAGAACCATTGTAAGAAACAAAACCAAAG
AatgaATGTCttctgaaatttcaaattactcCAGTGCATTGGGACATATT
CCACGTCAAAGTATTGTTGATCGCTCCACGTATTTCCGTGTTGGTAATTC
TGAATCGAAAAGACAACAATATGTTGAAACGGAAGCCGTACAAGATTTCC
GTCACGGCGAACGATTGGTTGGCGTTCATTCTGAACTGCAACATGTATTC
AGAGCTAGCGAGGTTAATAACTCAGTTACCAAAGAAAATGCTATACACAA
ACATAAACAAGCCATTCAATGCGTGCACGAAGAAATGCGACGAACATCCA
TCGATCAGCGTGTTAAACGAGAATTGAGCCGAGCCACCGAGTTCGAACGA
AAGCGACGAATCTCCATTGTCGAGGATGCTTTGGAGAATCCTTGTAGTGA
GACTTGTAAAAATATGCAAGCCACAAATAATCGATTGATTGAAGTACATC
AAAGTTTAAAAGAAATCTTTAAGAGAAGGGAGTCCATCAAAGCAGCGAAA
GAGAGAGAAGTAAGGATCGGAGTGGAAGAATCCAAAGAAATGTTACTACA
ACAATTACGTAGACGATCAGCGTATACGTCCTTAAAAGATGACATCGAAA
ATGAACATGTCCAACAGATCAGAGACTTTCATGAAAGATATCAGAATGAA
GATTTTTGTCGCACTGATCAACAGTTAATGGATGTACAAGAAGAAATGAT
TAAACTTTACAGGAAAAACGAGGGTATGCGACAAGAAAAGGAAAGACAAC
AAATGGAGAATGCCAAACAAAGGAAATCAATTGTGGAAGAAGAATTGGTA
CGTCATTTCAACAGAAAATGTGCTAAAACCATGTCAAACATTGAATGGGG
AAGTGTGCGCAGAAGTAACACTGACTCGATGGCACTGGCTCGAGGTCAAG
GTcgccaaataaaaaagaacaaaaagactGCCGTCGGTTTTCGAAAACTT
CAAGCCATACATTCGGCATTGATTTTAAGAACCATTGTAAGAAACAAAAC
CAAAGAatgaATGTCttctgaaatttcaaattactcCAGTGCATTGGGAC
ATATTCCACGTCAAAGTATTGTTGATCGCTCCACGTATTTCCGTGTTGGT
AATTCTGAATCGAAAAGACAACAATATGTTGAAACGGAAGCCGTACAAGA
TTTCCGTCACGGCGAACGATTGGTTGGCGTTCATTCTGAACTGCAACATG
TATTCAGAGCTAGCGAGGTTAATAACTCAGTTACCAAAGAAAATGCTATA
CACAAACATAAACAAGCCATTCAATGCGTGCACGAAGAAATGCGACGAAC
ATCCATCGATCAGCGTGTTAAACGAGAATTGAGCCGAGCCACCGAGTTCG
AACGAAAGCGACGAATCTCCATTGTCGAGGATGCTTTGGAGAATCCTTGT
AGTGAGACTTGTAAAAATATGCAAGCCACAAATAATCGATTGATTGAAGT
ACATCAAAGTTTAAAAGAAATCTTTAAGAGAAGGGAGTCCATCAAAGCAG
CGAAAGAGAGAGAAGTAAGGATCGGAGTGGAAGAATCCAAAGAAATGTTA
CTACAACAATTACGTAGACGATCAGCGTATACGTCCTTAAAAGATGACAT
CGAAAATGAACATGTCCAACAGATCAGAGACTTTCATGAAAGATATCAGA
ATGAAGATTTTTGTCGCACTGATCAACAGTTAATGGATGTACAAGAAGAA
ATGATTAAACTTTACAGGAAAAACGAGGGTATGCGACAAGAAAAGGAAAG
ACAACAAATGGAGAATGCCAAACAAAGGAAATCAATTGTGGAAGAAGAAT
TGGTACGTCATTTCAACAGAAAATGTGCTAAAACCATGTCAAACATTGAA
TGGGGAAGTGTGCGCAGAAGTAACACTGACTCGATGGCACTGGCTCGAGG
TCAAGGTcgccaaataaaaaagaacaaaaagactGCCGTCGGTTTTCGAA
AACTTCAAGCCATACATTCGGCATTGATTTTAAGAACCATTGTAAGAAAC
AAAACCAAAGAatgaATGTCttctgaaatttcaaattactcCAGTGCATT
GGGACATATTCCACGTCAAAGTATTGTTGATCGCTCCACGTATTTCCGTG
TTGGTAATTCTGAATCGAAAAGACAACAATATGTTGAAACGGAAGCCGTA
CAAGATTTCCGTCACGGCGAACGATTGGTTGGCGTTCATTCTGAACTGCA
ACATGTATTCAGAGCTAGCGAGGTTAATAACTCAGTTACCAAAGAAAATG
CTATACACAAACATAAACAAGCCATTCAATGCGTGCACGAAGAAATGCGA
CGAACATCCATCGATCAGCGTGTTAAACGAGAATTGAGCCGAGCCACCGA
GTTCGAACGAAAGCGACGAATCTCCATTGTCGAGGATGCTTTGGAGAATC
CTTGTAGTGAGACTTGTAAAAATATGCAAGCCACAAATAATCGATTGATT
GAAGTACATCAAAGTTTAAAAGAAATCTTTAAGAGAAGGGAGTCCATCAA
AGCAGCGAAAGAGAGAGAAGTAAGGATCGGAGTGGAAGAATCCAAAGAAA
TGTTACTACAACAATTACGTAGACGATCAGCGTATACGTCCTTAAAAGAT
GACATCGAAAATGAACATGTCCAACAGATCAGAGACTTTCATGAAAGATA
TCAGAATGAAGATTTTTGTCGCACTGATCAACAGTTAATGGATGTACAAG
AAGAAATGATTAAACTTTACAGGAAAAACGAGGGTATGCGACAAGAAAAG
GAAAGACAACAAATGGAGAATGCCAAACAAAGGAAATCAATTGTGGAAGA
AGAATTGGTACGTCATTTCAACAGAAAATGTGCTAAAACCATGTCAAACA
TTGAATGGGGAAGTGTGCGCAGAAGTAACACTGACTCGATGGCACTGGCT
CGAGGTCAAGGTcgccaaataaaaaagaacaaaaagactGCCGTCGGTTT
TCGAAAACTTCAAGCCATACATTCGGCATTGATTTTAAGAACCATTGTAA
GAAACAAAACCAAAGAatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064170-exon-scaffold_41-1491911889:437356..438097 | TCONS_00064170-exon-scaffold_41-1491911889:437356..438097 | Clytia hemisphaerica | exon |
| TCONS_00064170-exon-scaffold_41-1510915933:437356..438097 | TCONS_00064170-exon-scaffold_41-1510915933:437356..438097 | Clytia hemisphaerica | exon |
| TCONS_00064170-exon-scaffold_41-1575043694:437356..438097 | TCONS_00064170-exon-scaffold_41-1575043694:437356..438097 | Clytia hemisphaerica | exon |
| TCONS_00064170-exon-scaffold_41-1491911889:438492..438761 | TCONS_00064170-exon-scaffold_41-1491911889:438492..438761 | Clytia hemisphaerica | exon |
| TCONS_00064170-exon-scaffold_41-1510915933:438492..438761 | TCONS_00064170-exon-scaffold_41-1510915933:438492..438761 | Clytia hemisphaerica | exon |
| TCONS_00064170-exon-scaffold_41-1575043694:438492..438761 | TCONS_00064170-exon-scaffold_41-1575043694:438492..438761 | Clytia hemisphaerica | exon |
| TCONS_00064170-exon-scaffold_41-1491911889:439549..439788 | TCONS_00064170-exon-scaffold_41-1491911889:439549..439788 | Clytia hemisphaerica | exon |
| TCONS_00064170-exon-scaffold_41-1510915933:439549..439788 | TCONS_00064170-exon-scaffold_41-1510915933:439549..439788 | Clytia hemisphaerica | exon |
| TCONS_00064170-exon-scaffold_41-1575043694:439549..439788 | TCONS_00064170-exon-scaffold_41-1575043694:439549..439788 | Clytia hemisphaerica | exon |
| TCONS_00064170-exon-scaffold_41-1491911889:440551..440878 | TCONS_00064170-exon-scaffold_41-1491911889:440551..440878 | Clytia hemisphaerica | exon |
| TCONS_00064170-exon-scaffold_41-1510915933:440551..440878 | TCONS_00064170-exon-scaffold_41-1510915933:440551..440878 | Clytia hemisphaerica | exon |
| TCONS_00064170-exon-scaffold_41-1575043694:440551..440878 | TCONS_00064170-exon-scaffold_41-1575043694:440551..440878 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_41 | supercontig | scaffold_41:437356..440878 + |
Blast
The following BLAST results are available for this feature:
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