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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064165 ID=TCONS_00064165|Name=TCONS_00064165|organism=Clytia hemisphaerica|type=transcript|length=6462bpRun BLAST on NCBI protein sequence of TCONS_00064165-protein >TCONS_00064165-protein ID=TCONS_00064165-protein|Name=TCONS_00064165-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1127bp MALSHRLQVGDQDCLHGNWSPWSPCLKDGSHVMVRKQRRSRHLLAYPLGKRun BLAST on NCBI transcript from alignment at scaffold_41:293869..307832+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00064165 ID=TCONS_00064165|Name=TCONS_00064165|organism=Clytia hemisphaerica|type=transcript|length=13964bp|location=Sequence derived from alignment at scaffold_41:293869..307832+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_41:293869..307832+ >TCONS_00064165 ID=TCONS_00064165|Name=TCONS_00064165|organism=Clytia hemisphaerica|type=CDS|length=30429bp|location=Sequence derived from alignment at scaffold_41:293869..307832+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00064165 vs. Swiss-Prot (Human)
Match: THS7A (Thrombospondin type-1 domain-containing protein 7A OS=Homo sapiens GN=THSD7A PE=1 SV=4) HSP 1 Score: 325.094 bits (832), Expect = 1.199e-89 Identity = 341/1266 (26.94%), Postives = 519/1266 (41.00%), Query Frame = 2
Query: 2981 RDKKTFRTKFSIHHRNVSCVDNKGLICHVT---DSTMALSHRLQVGDQDCLHGNWSPWSPCLKDGSHVMVRK---QRRSRHLLAYPLGKGKPCNTTTEERSCNVNTRLVT--EHFVWFSGNWSSCYTDKSSNFVEEK-------CQIYKKNRPVFCTRLGDETLTPLS-----------NLKCASVVMPKEEELCHVVCSQVSCFYSDWSEWKNCSH----------GYIKRNRTLLH------GSSHACILTEQKRSCNSERAL-WERVTDGVCKLYGGDICGEGVIDSKVNC-KMEGKTVDESNCDRMTKPLTSSTCSVPCKPGHTLKCVLSTWSKWSICQN----GVKNRTRILLH----------GNQNCLKVSRTENKKCYTKEYFYIPPSWGVC------------EIMNQSIGCGKGEQTRNFQCVENLIGNVVNESYCLERLNYTQPIETRSCYVC--NDCIMTPWSQWEPDCSAICAPSRAQGSTSTQRRRYILSQHSAK----CNESLIETKTCPP---CLDYHWVTEKWELCTHDNAPMMGPQTEIMVMRN---GYQIRDVYC--SDGPNIVPDSLCHDEKPIES--RECHIDWLNTCQLEPWSEWKECDKPCGNGSQKRSRPVLNKGCKVDTSIKFNETRPCNTQKCFEYEINE---GDWTRCQLIGASVSCDKSFNVNF-------GIQYRNVTCFTTDGKIVPLKYCEE--YFEEEFPNKKRCVLPCSNDCQISQWSTFSECSAKCGIGMSARTRRIYQHASSDRPPCP--SSINGQFVMEQIPCKIRNCHDDQWVKGQWGPCT---VGNNATCGKGTKKRSVHCMQMSIERPSNS-----CLAEIKPRAQKQCKVPCDTDCLVSDWSPWTPCE---NESTNRKRE---VTRP---GNNCPGLYQERQCSNEK----YKWRISKWSSCFLN-KGFCGKGIRQRFVECIKTASDLVVPSSYC--LHIETTPSSXXXXXXXXXXXXRLTYWSTWTECDSKCGHVSYQTRQR------EGRGDCSGVKLKETLQCEVLPCYALTTGEWSSCQPDVPSSCGVGTQRRSAKCMRDDGNTMDLRHCVD---------FLTGRER--LERECNIPCWNDCILSPWSSWSFCFKTCSPPESQS-SSIQLRTRHVLQKPTIGGVQCSSNMEEQRTCNKGTCFRFDWTIN----SAGEYKCTRSDGLTVSTGC---KPKDGMYKCD--CSLVGNAICVQKEFCMCKKGYSANLNGEQRLVYC 6325
++ K + + R V C++ G ++ + ++ + V ++C WS WSPC K H MV + R+R + +P+G K C E+ C V + W + W+ C D + +++ C + R V+C + + L+ LS +LK + +P +LCH+ C C S WS W C++ G+ R R + + G + C + C W+ V G C+ G CG G +V C +G+ VD C P+ + C PC L + S C G + R R +L N + L+ R+ N+ T ++ P WG C N C G QTR CV +G V C E L +P R C + DCI+TP+S W C + C S Q R ++ Q A C + L E K C C Y W T KW C P Q G Q R + C DG P+ + + C I + CQL WS++ C+ CG + R R ++ K K + + TQ C + N G+W+ C L V V G +Y+ + C+ +G++V C Y EE C++PC +DC++S+WS +S CS CG G+ R++ + + + PCP +N V E +PC +C+ WV W C V CG+G + R V CMQ + + PS C E P + CK+PC DC++S+W PWT C N+S+ R+R + +P G +CP ++ C+ K Y + ++ WS+C L+ K CG GI+ R ++C+++ V YC L +E C C C+L+ WS W+EC CG R+R +G G + ++ C V PCY G+WS CQ + CG GT+ R+ C+ DG+ D VD + G + LE C+ PC DC L WSSWS C TC E IQ+R+R V+ + C M E ++C G C+ + W + S+ C RSDG+ V+ GC D C+ CS ++ C + + C C++GY+ ++ L C
Sbjct: 312 QENKYWDIQIGYQTREVMCINKTGKAADLSFCQQEKLPMTFQSCVITKECQVSEWSEWSPCSKT-CHDMVSPAGTRVRTRTIRQFPIGSEKECPEFEEKEPCLSQGDGVVPCATYGWRTTEWTECRVDPLLSQQDKRRGNQTALCGGGIQTREVYCVQANENLLSQLSTHKNKEASKPMDLKLCTGPIPNTTQLCHIPCP-TECEVSPWSAWGPCTYENCNDQQGKKGFKLRKRRITNEPTGGSGVTGNCPHLLEAIPCEEPACYDWKAVRLGNCEPDNGKECGPGTQVQEVVCINSDGEEVDRQLCRDAIFPIPVA-CDAPCPKDCVLSTWSTWSSCSHTCSGKTTEGKQIRARSILAYAGEEGGIRCPNSSALQEVRSCNEHPCTVYHWQTGP-WGQCIEDTSVSSFNTTTTWNGEASCSVGMQTRKVICVRVNVGQV-GPKKCPESL---RPETVRPCLLPCKKDCIVTPYSDWT-SCPSSC--KEGDSSIRKQSRHRVIIQLPANGGRDCTDPLYEEKACEAPQACQSYRWKTHKWRRCQL--VPWSVQQDSPGAQEGCGPGRQARAITCRKQDGGQAGIHECLQYAGPVPALTQACQIPCQDDCQLTSWSKFSSCNGDCG-AVRTRKRTLVGKSKKKEKCKNSHLYPLIETQYCPCDKYNAQPVGNWSDCILPEGKVEVLLGMKVQGDIKECGQGYRYQAMACYDQNGRLVETSRCNSHGYIEEA------CIIPCPSDCKLSEWSNWSRCSKSCGSGVKVRSKWLREKPYNGGRPCPKLDHVNQAQVYEVVPCH-SDCNQYLWVTEPWSICKVTFVNMRENCGEGVQTRKVRCMQNTADGPSEHVEDYLCDPEEMPLGSRVCKLPCPEDCVISEWGPWTQCVLPCNQSSFRQRSADPIRQPADEGRSCPNAVEKEPCNLNKNCYHYDYNVTDWSTCQLSEKAVCGNGIKTRMLDCVRSDGK-SVDLKYCEALGLEKNWQMNTSCMVECPVNCQLSDWSPWSECSQTCGLTGKMIRRRTVTQPFQGDGRPCPSLMDQSKPCPVKPCYRWQYGQWSPCQVQ-EAQCGEGTRTRNISCVVSDGSADDFSKVVDEEFCADIELIIDGNKNMVLEESCSQPCPGDCYLKDWSSWSLCQLTCVNGEDLGFGGIQVRSRPVIIQELENQHLCPEQMLETKSCYDGQCYEYKWMASAWKGSSRTVWCQRSDGINVTGGCLVMSQPDADRSCNPPCSQP-HSYCSETKTCHCEEGYTEVMSSNSTLEQC 1553 The following BLAST results are available for this feature:
BLAST of TCONS_00064165 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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