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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064164 ID=TCONS_00064164|Name=TCONS_00064164|organism=Clytia hemisphaerica|type=transcript|length=1717bp
AGAACAACAATGGAAGACGAAATGGTTACAAAGTTAAAACACGAGCATGC
CAAAGAGATCGAAAATCTGATTCGGAGTCATAAAATAGAAGTATTGGAGC
TGAagaatgaatttaaattaaagGAAATAGAGAAAGAGAATCAACAAAAG
GACAAAACAATAGAGCTAGAAAAAGAAGTGCAACGCTTAAGAAATGATAT
CGCATTGATGAAATTAAAAGCCAAGTATAAACAAATCGAGGCTGATGAAA
GAATCCAGGAGGTGAAGAACCAAATGGGTATGATGTCATTGGAAtgtgaa
aaagagaaaaatgagatACGAAAAGAACTCGAACAACAAGTTCAGAAAAT
GAAACTTCAAATTGAGCTTTTGGAAATGGATAAAGTGGAATCAAGAAAAG
AACCTGCCAAAAAAGGAGTATCCACCCAACGTGATGCACCAGCATTGAGT
AATGAAAGAGTTTCGGATCAACCAGACATACCAGTATTGGAAAGCAACAA
AACTTCAAAACAACAAGACAAATCAGCCCAAGGAATTGAAAGAGTTTCGA
GTCAAAGAGATTCAAAAGCATTGGGAAGCAGCAGAATGTCAATCCAACGA
GAACCAGCTATCGTAACCAACAAAGAAAATGCTGAACGATTTTTTGAAGG
AGCTAATCGTTTTTTCGGAACAGGACGAAGGAATTCTTATTCTGGAACAT
ATCAAGAATGGTATCAAGATTTATCAACTTCAACGGAAAACCATAGACAA
TATTTCAacgaaaagtttgttttgattcggaAAGAGGTCAAGAAATATAC
TGAATTTTTGTCATTGTTGTTGAAACGTGGGAAAGTAGAGGAACAGATGT
GCGATTTAGTGGTGGCAGGACTGAACGAAAAAGTGTTGAGTGAATCTGAA
GTCATGATCTTACATCCACAAGAATtaggaaaatatttgaaaataactGA
CTATCATAGACGAGATCATTATACATATTGGGCTTACAATGGCGTAACCA
AAGACTTTTATTTTGGTTCATCATACTCCGTTATTATTCTTGTGGCATTG
AAGCAAAAATAAATGTGACAAGAAAGGGCTTGAGTATCTAtttcttcatt
tgatttttatttgttaaagaCAATCTCAAGACACCATGCATACATATGAA
AATGATGTAGAAAGTGCATTATtgtttattcaaaatatttgtttattaTG
GACAGGTTAGCGATAAAAAGGGCCAATTTCGATATAATCAGTTGCCGTTT
TATCAGTGTATACAAATAGATTATTCTTTGTAAATTTCTAACCAGTACCA
TATATGAGCCTGCTATTAGAACCCAACTAttagatacacgcttttttata
agaatatactttattagaatgtccatgatgaaaatagccaaaatattaag
aatctCGTAAGAATATTACCATCATGGAATAGGCAactgaagctaagaat
gtcatatCTATAGCCTTTTACTTGTATATTGCCATTTAATCCCAAGCAAT
GCTAAGAAGTTTCACAAAAATCCGAAATTCTTGCTTGAGGTATATGTTGC
ATGCTAGATTCAGGCTTGGTTTTCACCTTAatctaagaatactgtaagaa
tatttcaggataatTTCGACCAAagagttaagaatatccatgatgaaatg
gatttacaccattcttataaaaaaagcgtgtattttgaataaaatccACT
ATTTATTATTGTAAATT Run BLAST on NCBI protein sequence of TCONS_00064164-protein >TCONS_00064164-protein ID=TCONS_00064164-protein|Name=TCONS_00064164-protein|organism=Clytia hemisphaerica|type=polypeptide|length=353bp
RTTMEDEMVTKLKHEHAKEIENLIRSHKIEVLELKNEFKLKEIEKENQQK
DKTIELEKEVQRLRNDIALMKLKAKYKQIEADERIQEVKNQMGMMSLECE
KEKNEIRKELEQQVQKMKLQIELLEMDKVESRKEPAKKGVSTQRDAPALS
NERVSDQPDIPVLESNKTSKQQDKSAQGIERVSSQRDSKALGSSRMSIQR
EPAIVTNKENAERFFEGANRFFGTGRRNSYSGTYQEWYQDLSTSTENHRQ
YFNEKFVLIRKEVKKYTEFLSLLLKRGKVEEQMCDLVVAGLNEKVLSESE
VMILHPQELGKYLKITDYHRRDHYTYWAYNGVTKDFYFGSSYSVIILVAL
KQK Run BLAST on NCBI transcript from alignment at scaffold_41:233328..235128+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064164 ID=TCONS_00064164|Name=TCONS_00064164|organism=Clytia hemisphaerica|type=transcript|length=1801bp|location=Sequence derived from alignment at scaffold_41:233328..235128+ (Clytia hemisphaerica)
AGAACAACAATGGAAGACGAAATGGTTACAAAGTTAAAACACGAGCATGC
CAAAGAGATCGAAAATCTGATTCGGAGTCATAAAATAGAAGTATTGGAGC
TGAagaatgaatttaaattaaagGAAATAGAGAAAGAGAATCAACAAAAG
GACAAAACAATAGAGCTAGAAAAAGAAGTGCAACGCTTAAGAAATGATAT
CGCATTGATGAAATTAAAAGCCAAGTATAAACAAATCGAGGCTGATGAAA
GAATCCAGGAGGTGAAGAACCAAATGGGTATGATGTCATTGGAAtgtgaa
aaagagaaaaatgagatACGAAAAGAACTCGAACAACAAGTTCAGAAAAT
GAAACTTCAAATTGAGCTTTTGGAAATGGATAAAGTGGAATCAAGAAAAG
AACCTGCCAAAAAAGGAGTATCCACCCAACGTGATGCACCAGCATTGAGT
AATGAAAGAGTTTCGGATCAACCAGACATACCAGTATTGAGTAATAAAAG
AGTTTCGGATCAACCAGACATACCAGTATTGAATAATAAAAGAGTTTCGG
ATCAACCAGACATACCAGTATTGGAAAGCAACAAAACTTCAAAACAACAA
GACAAATCAGCCCAAGGAATTGAAAGAGTTTCGAGTCAAAGAGATTCAAA
AGCATTGGGAAGCAGCAGAATGTCAATCCAACGAGAACCAGCTATCGTAA
CCAACAAAGAAAATGCTGAACGATTTTTTGAAGGAGCTAATCGTTTTTTC
GGAACAGGACGAAGGAATTCTTATTCTGGAACATATCAAGAATGGTATCA
AGATTTATCAACTTCAACGGAAAACCATAGACAATATTTCAacgaaaagt
ttgttttgattcggaAAGAGGTCAAGAAATATACTGAATTTTTGTCATTG
TTGTTGAAACGTGGGAAAGTAGAGGAACAGATGTGCGATTTAGTGGTGGC
AGGACTGAACGAAAAAGTGTTGAGTGAATCTGAAGTCATGATCTTACATC
CACAAGAATtaggaaaatatttgaaaataactGACTATCATAGACGAGAT
CATTATACATATTGGGCTTACAATGGCGTAACCAAAGACTTTTATTTTGG
TTCATCATACTCCGTTATTATTCTTGTGGCATTGAAGCAAAAATAAATGT
GACAAGAAAGGGCTTGAGTATCTAtttcttcatttgatttttatttgtta
aagaCAATCTCAAGACACCATGCATACATATGAAAATGATGTAGAAAGTG
CATTATtgtttattcaaaatatttgtttattaTGGACAGGTTAGCGATAA
AAAGGGCCAATTTCGATATAATCAGTTGCCGTTTTATCAGTGTATACAAA
TAGATTATTCTTTGTAAATTTCTAACCAGTACCATATATGAGCCTGCTAT
TAGAACCCAACTAttagatacacgcttttttataagaatatactttatta
gaatgtccatgatgaaaatagccaaaatattaagaatctCGTAAGAATAT
TACCATCATGGAATAGGCAactgaagctaagaatgtcatatCTATAGCCT
TTTACTTGTATATTGCCATTTAATCCCAAGCAATGCTAAGAAGTTTCACA
AAAATCCGAAATTCTTGCTTGAGGTATATGTTGCATGCTAGATTCAGGCT
TGGTTTTCACCTTAatctaagaatactgtaagaatatttcaggataatTT
CGACCAAagagttaagaatatccatgatgaaatggatttacaccattctt
ataaaaaaagcgtgtattttgaataaaatccACTATTTATTATTGTAAAT
T Coding sequence (CDS) from alignment at scaffold_41:233328..235128+ >TCONS_00064164 ID=TCONS_00064164|Name=TCONS_00064164|organism=Clytia hemisphaerica|type=CDS|length=2124bp|location=Sequence derived from alignment at scaffold_41:233328..235128+ (Clytia hemisphaerica)
AGAACAACAATGGAAGACGAAATGGTTACAAAGTTAAAACACGAGCATGC
CAAAGAGATCGAAAATCTGATTCGGAGTCATAAAATAGAAGTATTGGAGC
TGAagaatgaatttaaattaaagGAAATAGAGAAAGAGAATCAACAAAAG
GACAAAACAATAGAGCTAGAAAAAGAAGTGCAACGCTTAAGAAATGATAT
CGCATTGATGAAATTAAAAGCCAAGTATAAACAAATCGAGGCTGATGAAA
GAATCCAGGAGGTGAAGAACCAAATGGGTATGATGTCATTGGAAtgtgaa
aaagagaaaaatgagatACGAAAAGAACTCGAACAACAAGTTCAGAAAAT
GAAACTTCAAATTGAGCTTTTGGAAATGGATAAAGTGGAATCAAGAAAAG
AACCTGCCAAAAAAGGAGTATCCACCCAACGTGATGCACCAGCATTGAGT
AATGAAAGAGTTTCGGATCAACCAGACATACCAGTATTGGAAAGCAACAA
AACTTCAAAACAACAAGACAAATCAGCCCAAGGAATTGAAAGAGTTTCGA
GTCAAAGAGATTCAAAAGCATTGGGAAGCAGCAGAATGTCAATCCAACGA
GAACCAGCTATCGTAACCAACAAAGAAAATGCTGAACGATTTTTTGAAGG
AGCTAATCGTTTTTTCGGAACAGGACGAAGGAATTCTTATTCTGGAACAT
ATCAAGAATGGTATCAAGATTTATCAACTTCAACGGAAAACCATAGACAA
TATTTCAacgaaaagtttgttttgattcggaAAGAGGTCAAGAAATATAC
TGAATTTTTGTCATTGTTGTTGAAACGTGGGAAAGTAGAGGAACAGATGT
GCGATTTAGTGGTGGCAGGACTGAACGAAAAAGTGTTGAGTGAATCTGAA
GTCATGATCTTACATCCACAAGAATtaggaaaatatttgaaaataactGA
CTATCATAGACGAGATCATTATACATATTGGGCTTACAATGGCGTAACCA
AAGACTTTTATTTTGGTTCATCATACTCCGTTATTATTCTTGTGGCATTG
AAGCAAAAATAAAGAACAACAATGGAAGACGAAATGGTTACAAAGTTAAA
ACACGAGCATGCCAAAGAGATCGAAAATCTGATTCGGAGTCATAAAATAG
AAGTATTGGAGCTGAagaatgaatttaaattaaagGAAATAGAGAAAGAG
AATCAACAAAAGGACAAAACAATAGAGCTAGAAAAAGAAGTGCAACGCTT
AAGAAATGATATCGCATTGATGAAATTAAAAGCCAAGTATAAACAAATCG
AGGCTGATGAAAGAATCCAGGAGGTGAAGAACCAAATGGGTATGATGTCA
TTGGAAtgtgaaaaagagaaaaatgagatACGAAAAGAACTCGAACAACA
AGTTCAGAAAATGAAACTTCAAATTGAGCTTTTGGAAATGGATAAAGTGG
AATCAAGAAAAGAACCTGCCAAAAAAGGAGTATCCACCCAACGTGATGCA
CCAGCATTGAGTAATGAAAGAGTTTCGGATCAACCAGACATACCAGTATT
GGAAAGCAACAAAACTTCAAAACAACAAGACAAATCAGCCCAAGGAATTG
AAAGAGTTTCGAGTCAAAGAGATTCAAAAGCATTGGGAAGCAGCAGAATG
TCAATCCAACGAGAACCAGCTATCGTAACCAACAAAGAAAATGCTGAACG
ATTTTTTGAAGGAGCTAATCGTTTTTTCGGAACAGGACGAAGGAATTCTT
ATTCTGGAACATATCAAGAATGGTATCAAGATTTATCAACTTCAACGGAA
AACCATAGACAATATTTCAacgaaaagtttgttttgattcggaAAGAGGT
CAAGAAATATACTGAATTTTTGTCATTGTTGTTGAAACGTGGGAAAGTAG
AGGAACAGATGTGCGATTTAGTGGTGGCAGGACTGAACGAAAAAGTGTTG
AGTGAATCTGAAGTCATGATCTTACATCCACAAGAATtaggaaaatattt
gaaaataactGACTATCATAGACGAGATCATTATACATATTGGGCTTACA
ATGGCGTAACCAAAGACTTTTATTTTGGTTCATCATACTCCGTTATTATT
CTTGTGGCATTGAAGCAAAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064164-exon-scaffold_41-1491911889:233328..233804 | TCONS_00064164-exon-scaffold_41-1491911889:233328..233804 | Clytia hemisphaerica | exon |
| TCONS_00064164-exon-scaffold_41-1510915933:233328..233804 | TCONS_00064164-exon-scaffold_41-1510915933:233328..233804 | Clytia hemisphaerica | exon |
| TCONS_00064164-exon-scaffold_41-1575043694:233328..233804 | TCONS_00064164-exon-scaffold_41-1575043694:233328..233804 | Clytia hemisphaerica | exon |
| TCONS_00064164-exon-scaffold_41-1491911889:233889..235128 | TCONS_00064164-exon-scaffold_41-1491911889:233889..235128 | Clytia hemisphaerica | exon |
| TCONS_00064164-exon-scaffold_41-1510915933:233889..235128 | TCONS_00064164-exon-scaffold_41-1510915933:233889..235128 | Clytia hemisphaerica | exon |
| TCONS_00064164-exon-scaffold_41-1575043694:233889..235128 | TCONS_00064164-exon-scaffold_41-1575043694:233889..235128 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_41 | supercontig | scaffold_41:233328..235128 + |
Blast
The following BLAST results are available for this feature:
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