TCONS_00064159 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064159
Unique NameTCONS_00064159
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1065

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064159 ID=TCONS_00064159|Name=TCONS_00064159|organism=Clytia hemisphaerica|type=transcript|length=1065bp
TTTAAAAGGTGTGCTTTATTTAAGATTAAACAAGACAAAAAAGATGGATA
AATCAATCATTCAAAAGACACATGACACACTTGGAAAAGCCATTAAGAAA
CCACCCTTAACTGAGAAGTTACTGAATAAACCACCATTTAGATTCATTCA
TGATATTGCGACAGAAGTTATAAGGACTGGAGTTTTTAAAGGATTGTATA
CTGAACATGAGCTGAATTCCTCAAATGTCAGCgaAAGGGATGCAAAAGTT
GCATTTTTACAGAAATTGGTTGATTGTGTTGGTCATGTTAGAGGTGAACC
AATGTCAGTGCGACCTTCAAAATGTGTCGCTGGTCATGAACCAGAGAAAA
CGAATGAATTGTTGCAATTTATTGGAAAGTTATGTTTAGACAAGGCTGAT
ACAACAGATGCTGTTCAGAAAACTCTGAGCGGTGAAAAGCCTGGTGGCAA
AAAGAAAAGTAGCAGTAAAAAGAAGGAGgatacaaaagaaaaagatggcA
GCGCAAAAGACCGAaagaaagaagataaaaaagatGGCGAGAAGGAAAAG
GATAGAGACAAACGGAAAGACAAGGAAAAAGAGAAGAGTAAAGATCGTTC
TAGTGATCGTAAATCAAGAGAAAGCAGTggtaaaaataaagaagaaaaac
cgCTCAAAGAGGATAAAGGGAGAAAGGACAGAGATGGATCTTCCAAAGAT
AAAGACAAGGATAAAAAACGTGAAACTAGTTCTTCTAAAGATCGTGAAGG
AAGCTCTAAACACAGAGACGGTAGTTCCAAAGATAGGAAAGGAAGCTCCA
AGGATCGTGAATCTAGTTCTAAAGACAGAGAAGGGAGCTCTAAAGATCGT
AAAAAGGATCGGGATCgtgaaaaagataaagaaagacGATCAAAATCTAA
GGAAGAAAGAGATATTGAATCAGCGAAAAAAGATCggagtgaaaaagaaa
aagaaaaggagaAATCACGTGATAAGGAGCGCAcgtcaaaagaaaaagat
cCTTCTTCTTCATCACGcagtaaagaaaaagaaaaagttgaaaagatcGT
GCTTGATTCTGAAGA
Run BLAST on NCBI

transcript from alignment at scaffold_41:73999..81014+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064159 ID=TCONS_00064159|Name=TCONS_00064159|organism=Clytia hemisphaerica|type=transcript|length=7016bp|location=Sequence derived from alignment at scaffold_41:73999..81014+ (Clytia hemisphaerica)
TTTAAAAGGTGTGCTTTATTTAAGATTAAACAAGACAAAAAAGATGGATA
AATCAATCATTCAAAAGACACATGACACACTTGGAAAAGCCATTAAGAAA
CCACCCTTAACTGAGAAGTTACTGAATAAACCACCATTTAGATTCATTCA
TGATATTGCGACAGAAGTTATAAGGACTGGAGTTTTTAAAGGATTGTATA
CTGAACATGAGCTGAATTCCTCAAATGTCAGCGTAAGTTGTATTTTCATT
CTGATTATTTAACTaagatttttctttcttctttgaaGTCTTTTAATTAT
TACCATGTTATTAGCCACTTGAAGTATGAAatccagatgagatggagttt
ttataagacttTAAtatttggtcatttgaagtaataaatcgttctttaga
aaaagtaacaaaattgttttatttctggttaacgaccaatcaaatcaaat
aagagcttgtaaaaactccatctcgtcccttGAAATCGCTATAAAATTAA
CAGAGGTATCATAATGAAAAGGGACAATAGACTAAAATTACACAACCGTT
TAtttagaaatatttattttgaataaatattttcggCATTAcaatataaa
accatttcattattttttatgtttaggaAAGGGATGCAAAAGTTGCATTT
TTACAGAAATTGGTTGATTGTGTTGGTAGGTGTAATTTATATCTTGATGG
ACAGCCAAGAAACCGCTTAGATTTGCTAAGTTCCATTTCATGGTGGCGTT
ATTATCTTCATAACATCTGCTATAATCTCAATAAATTTAGTTTTATCGAG
TTAATGAATATGAATGACTAGAAAATCTCTATTCTTTGACTAGCTTTAAG
GGGCTGATGTTGTGACCACTGACCACTTATTTTTGCCTTTCCTTAACCAG
TCAGCAGTtaataaattcattttatttCCAGGTCATGTTAGAGGTGAACC
AATGTCAGTGCGACCTTCAAAATGTGTCGCTGGTCATGAACCAGAGAAAA
CGAATGAATTGTTGCAATTTATTGGAAAGTTATGTTTAGACAAGGTAACA
TAGATTTTATTCTGTTTATACACTCTATAACGATCTCGGCGTAGTGAtat
agtggttatcatccttgactcccGCCTAAGAGGCCTGTTTTTGATACCCA
CCGTGTCTCTACGATTCACNTTAAATACACTCTATAACGATCTcggcgta
gtggtatagtggttatacTCCCGCCTAAGATACCCACCGtgtctctacga
ttcacttggcaagtgaatatacTTTCgaccgggtcaacccatgccatgct
AGGGGAATTGGGTACTATTACTCTGATACAATAGTGTGGGTAGATGAGAC
AGACATTGTTACATGCCGTGGTactcataaggttcggcctcgcttcagtg
tcgttcgagtgtcattGTATAAGCTATGGCTATCAGtgccgtgattccta
ctccttcgtgggtaggacccattccgaatgcattcggagggctcatGTCT
ATCTATATCTTTAAGGATTGTGACATTTCATTAATATGAATGAAGTAATG
TCCCTTTTTAAAGCCCTTTTCATACTCCCTTACATTTAAATTGTGATTTT
ACTTTAAGTCTTTTAACAACTTTGATTAAGAACAACACGACCAAACATAA
AAATTTCATCACACATTTTGTGAAATTCAATTTGGCTTTTACAattattt
catcatcagatttgaaatttttaacattttatatTACTTTTTTCAGGCTG
ATACAACAGATGCTGTTCAGAAAACTCTGAGCGGTGAAAAGCCTGGTGGC
AAAAAGTAAGATACATGTTTTACTAAAATACTAtgtattatttatttttt
attttctatgatAATATAATATCCATTGCACACCCCGTTCTCCTATTTGC
AGGGGGAGGTAAAAGAAAGGGGCTCATTTCAACTGGGGTGGAACATCACT
GACTGTTAATGAATTAGGTCCAACTTAAAGATCAAATGGGAATTCTTAAA
TTAGAGTGCCTTCCCCATTGGGAATGAAAGAAAGTTCAGTATAGTTTTCA
GTGGTCAAGGGCCTCATAAGTTAATAGGTACAGAGGTGCCATAGACATTG
CCAGATGTAGGATATAGTGGAATAATGaggatttttatctttttctatCT
ATTGTTTCAGGAAAAGTAGCAGTAAAAAGAAGGAGgatacaaaagaaaaa
gatggcAGCGCAAAAGACCGAaagaaagaagataaaaaagatGGCGAGAA
GGAAAAGGATAGAGACAAACGGAAAGACAAGGAAAAAGAGAAGAGTAAAG
ATCGTTCTAGTGATCGTAAATCAAGAGAAAGCAGTggtaaaaataaagaa
gaaaaaccgGTATGTTTACTTCAATTCGAAAGGGGTTATTTAAGCTTCCT
TATAAATTTCAATAGAAGAGCCTACTAGGCTAGGAGCGGGTGaatatgaa
acttttctattgcTCTACTTTATTGCACGGGGATGATAATggtagatttt
ttttgttttggataGCCAGTTGTGAATCTTCAGATGCGATTCTCGCGAAG
ATGTTGTATAAGGAGCttgggttttgtttttgaattttttattatgGTCA
CTCCGCATTATTGTTGATTGAACATTTTTGAGTATCATGTTTTCTTTTCT
CGAATCTTGAtcggtgtttttttttactttacagCTCAAAGAGGATAAAG
GGAGAAAGGACAGAGATGGATCTTCCAAAGATAAAGACAAGGATAAAAAA
CGTGAAACTAGTTCTTCTAAAGATCGTGAAGGAAGCTCTAAACACAGAGA
CGGTAGTTCCAAAGATAGGAAAGGAAGCTCCAAGGATCGTGAATCTAGTT
CTAAAGACAGAGAAGGGAGCTCTAAAGATCGTAAAAAGGATCGGGATCgt
gaaaaagataaagaaagacGATCAAAATCTAAGGAAGAAAGAGATATTGA
ATCAGCGAAAAAAGATCggagtgaaaaagaaaaagaaaaggagaAATCAC
GTGATAAGGAGCGCAcgtcaaaagaaaaagatcCTTCTTCTTCATCACGc
agtaaagaaaaagaaaaagttgaaaagatcGTGGTAAGAATGTCCTCtgc
ttgtctgtacacagacccagtatctacggctaatttaaaaattcattgcc
gtagagagtctgttgtcattgtcttttctcatttgagatttttcaaaccg
actgctgcgatggagtgttggtgagagaggggaggcgacgagagaagtgt
tgctatttataaaccatacttcatcgcagaggtctccgcacgggattttt
ttatcaaacagacaaagcgcacagagtgtactactaGGAATAAACATCTG
GTGAAAAAAGTCCTCTGCACTTATATTTCAATAATGCAGTGTTcaaaaaa
tagggtttttcaGCAATATCCTGCAAATATTTGAAGAATCTTGCCTTGTA
ATTTGTTGTTTAAAGTCTCTTTCCGTCTGAGACAAAAACGTTTGCCTTGA
CTTCTGATAATGTGCATGCATCCCCACCCTAAAGTGCATAAGATTACCTT
AAATGAAAAATCagcttttgaaatttaattttccgTCGTTAGATAGAAAA
TTTAAGATTCAGCCAATGATCATGAGACACAGATTGCGCTTTATTTAAGA
GTCCTTTAGTTTACTTTTAAAATGGTATACAGATCAGAACTGAATCTATT
TATTtgtaaatgaaataaatttcaaGCCATTACAGTGTAACGAATACCAT
AAAATAAAGAGTTGTTTTCGACGTTTTAGTTTCAAAATTATTTCCTTGCT
TGGTCTCAGTCTTAACCATAaccttttaaaaatcaaaagtttcgATTTAG
ATatgcgttttttataagaacaaactatataacaaCATAAGGCTTGGATG
GCCAANTTGAAAAGATCGTGGTAAGAATGTCCTCtgcttgtctgtacaca
gacccagtatctacggctaatttaaaaattcattgccgtagagagtctgt
tgtcattgtcttttctcatttgagatttttcaaaccgactgctgcgatgg
agtgttggtgagagaggggaggcgacgagagaagtgttgctatttataaa
ccatacttcatcgcagaggtctccgcacgggatttttttatcaaacagac
aaagcgcacagagtgtactactaGGAATAAACATCTGGTGAAAAAAGTCC
TCTGCACTTATATTTCAATAATGCAGCGTTcaaaaaatagggtttttcaG
CAATATCCTGCAAATATTTGAAGAATCTTGCCTTGTAATTTGTTGTTTAA
AGTCTCTTTCCGTCTGAGACAAAAACGTTTGCCTTGACTTCTGATAATGT
GCATGCATCCCCACCCTAAAGTGCATAAGATTACCTTAAATGAAAAATca
gcttttaaaatttaattttccgtCGTTAGATAGAAAATTTAAGATTCAGC
CAATGATCATGAGACACAGATTGCGCTTTATTTAAGAGTCCTTTAGTTTA
CTTTTAAAATGGTATACATATCAGAACTGAATCTATTTATTtgtaaatga
aataaatttcaaGCCATTACAGTGTAACGAATACCATAAAATAAAGAGTT
GTTTTCGACGTTTTAGTTTCAAAATTATTTCGTTGCTTGGTCTCAGTCTT
AACCATAaccttttaaaaatcaaaagtttcgATTTAGATatgcgtttttt
ataagaacaaactatataacaaCATAAGGCTtggatggccaaaatatcag
gGGGGGTACATGTTCAGTGTAGTGACCCATGGCCGGTGGGGTGGTGGTTT
TTCGAAGTTATCTTAATTTAGTACATGGTagtaaaaagggtggtccccta
aaaaaaatcccagaaaaaatTACTACCATGTACTAAATTGGGTGGTACCA
AAgtaaactttaattttaaaggatAGTACAATGTAGTATATTCAGCTAGA
TttgatcaaaccaaatcgaaaaaCTGACAGTTGTATTATCGTACTGCATG
TGCCATaactaaaatctttctttcttctttctttctttgtttatttttct
ctttctttctttttgttatgttcaaatttcaatttcgaatgtttgaaata
ttcgaatttcaaatgtttACATAAATCGGTATACCGTGtgtatttttgtt
attgtttttcatgATGGTAGCCAAAGAAGTGGAGAAATATAttgatatac
cttatcggggaaaacttcgtcatggcttggcagcaggttttaggtgcccc
ctaagaattcaagtgacccctaagatttaggtaacccctggttgccaaat
attttaggtgacccctaaGCCAATGACACCTCAAATTTTTTCGAAAATCC
TTTTCATTCAGACAATCAAACAAATACAATAGTTAGTTTAGCTTATTGCT
AAATAGAATAAATGCCCTAATAAGAAATAAGAGATAAGCTAAGTACTGAA
GGTTCATGCcagattatcaaggttttgtaagtcagggtgcaaatcccttg
ccagacagattttttatctaagtaatgcaacagaattaaaaaatttttac
agataatatattagataccacattttcagtttttgagcattgcttagaTT
GGGCGGTTCAAGCTATAGTCCGTTATAGCCCCATGTGAACGACATGGATT
TTTcgtaacaatttacttttgaaaaacttcaggatttccgtaacattcaa
gattttttacgggaaaatcttggattttccgaaatttggcaagaaaatag
agcaaattttatggattttccaaTACATATGACTATTCTCaggatttcca
agtgaaaaaaaaaatcccaaaaaccCTGTCGTCCACAACTGtggaaatgg
tttttttctggaactgcccaATAAGGTATAAGATAAGAAAGTGCCAACCT
ATGGTCTGGTAGGCTGCTTATGATGAAAAGCAAGTTCAGAAAAATatcac
caaacatagaatctagcccccaggcagatccatctgaaaaaatttaggtg
acccctaacatggttagtcccccctagccacaggccAAAATTGGGTACCA
ATCGCTGTTTGACCTTTTAGCAGGTCAGATATACACACTTTTAATGAGCT
TTTGAAGTCATTAACAAATGTGAAAAGACGAGAGAATGGTAAATGGCTTG
GGAAATTGAGTTTAGATTCAGACTTGTAAACAAACGAAATTATCTATGTA
ACTCAAAAAAACTCTATATCGATataacaaaacttttttcaaactctgTT
CATTGCTTAGTAAACTACCTGGCAAGGGAGTTGCACCCCAACTTACAATA
ACTTACTATTCTTTTTTATCCTCCCCAATTCCCCTTAAACTTTAGTAAGA
AACAATAGGTTTAAGTAGGTTCAAGGAGCCAGCGAAAGCTTTTCTAtccc
aaaattttagaaaaaaatcatggtTAGTATCAATGGCTGTATTTGTTATT
GCTTTTcagtactttttcaaaagaaccagaaagaatGGTTGATTGTGTTA
AAATAAAGACAAAGTAAATGGTACAGGTGTGGTTAGTTTCCTGCAGCGTA
TTAAAAGGGTGTTGTAAAGAATCAAAATAGGTGATGGTAGCCACTACAAG
GTACTAAAGGGTGGTATAAGTATTCGAATTGGTGGTAATAGCTACTACAT
GGTAGTAAAAGGGGTGGTCCCCtaaaaaaatcccagaaaaaactagtacc
atgtactaaaaaagggtggtggtcccaGATTTTTTCTAAATTACTGAAAA
TCAGGTTATTACCCCATGGGTTACTACACTGAACATGTACCCCCCtgaaa
atactaagatttttagaccgattttttaggaaaatggctAAAAGTGCTCA
cataatggtgaaaataagattaTGCTAAGAATATATATAAGAATACAATA
ATAAGAATACACTCGAAATcacaaggcttcaaaatttttggatgttctta
taaaaaaacgtgtattcttttgattttatgttttttttatttccgtTTAC
AGCTTGATTCTGAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040228XLOC_040228Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064159-exon-scaffold_41-1491911889:73999..74230TCONS_00064159-exon-scaffold_41-1491911889:73999..74230Clytia hemisphaericaexon
TCONS_00064159-exon-scaffold_41-1510915933:73999..74230TCONS_00064159-exon-scaffold_41-1510915933:73999..74230Clytia hemisphaericaexon
TCONS_00064159-exon-scaffold_41-1575043694:73999..74230TCONS_00064159-exon-scaffold_41-1575043694:73999..74230Clytia hemisphaericaexon
TCONS_00064159-exon-scaffold_41-1491911889:74625..74673TCONS_00064159-exon-scaffold_41-1491911889:74625..74673Clytia hemisphaericaexon
TCONS_00064159-exon-scaffold_41-1510915933:74625..74673TCONS_00064159-exon-scaffold_41-1510915933:74625..74673Clytia hemisphaericaexon
TCONS_00064159-exon-scaffold_41-1575043694:74625..74673TCONS_00064159-exon-scaffold_41-1575043694:74625..74673Clytia hemisphaericaexon
TCONS_00064159-exon-scaffold_41-1491911889:74930..75042TCONS_00064159-exon-scaffold_41-1491911889:74930..75042Clytia hemisphaericaexon
TCONS_00064159-exon-scaffold_41-1510915933:74930..75042TCONS_00064159-exon-scaffold_41-1510915933:74930..75042Clytia hemisphaericaexon
TCONS_00064159-exon-scaffold_41-1575043694:74930..75042TCONS_00064159-exon-scaffold_41-1575043694:74930..75042Clytia hemisphaericaexon
TCONS_00064159-exon-scaffold_41-1491911889:75745..75803TCONS_00064159-exon-scaffold_41-1491911889:75745..75803Clytia hemisphaericaexon
TCONS_00064159-exon-scaffold_41-1510915933:75745..75803TCONS_00064159-exon-scaffold_41-1510915933:75745..75803Clytia hemisphaericaexon
TCONS_00064159-exon-scaffold_41-1575043694:75745..75803TCONS_00064159-exon-scaffold_41-1575043694:75745..75803Clytia hemisphaericaexon
TCONS_00064159-exon-scaffold_41-1491911889:76159..76357TCONS_00064159-exon-scaffold_41-1491911889:76159..76357Clytia hemisphaericaexon
TCONS_00064159-exon-scaffold_41-1510915933:76159..76357TCONS_00064159-exon-scaffold_41-1510915933:76159..76357Clytia hemisphaericaexon
TCONS_00064159-exon-scaffold_41-1575043694:76159..76357TCONS_00064159-exon-scaffold_41-1575043694:76159..76357Clytia hemisphaericaexon
TCONS_00064159-exon-scaffold_41-1491911889:76683..77081TCONS_00064159-exon-scaffold_41-1491911889:76683..77081Clytia hemisphaericaexon
TCONS_00064159-exon-scaffold_41-1510915933:76683..77081TCONS_00064159-exon-scaffold_41-1510915933:76683..77081Clytia hemisphaericaexon
TCONS_00064159-exon-scaffold_41-1575043694:76683..77081TCONS_00064159-exon-scaffold_41-1575043694:76683..77081Clytia hemisphaericaexon
TCONS_00064159-exon-scaffold_41-1491911889:81001..81014TCONS_00064159-exon-scaffold_41-1491911889:81001..81014Clytia hemisphaericaexon
TCONS_00064159-exon-scaffold_41-1510915933:81001..81014TCONS_00064159-exon-scaffold_41-1510915933:81001..81014Clytia hemisphaericaexon
TCONS_00064159-exon-scaffold_41-1575043694:81001..81014TCONS_00064159-exon-scaffold_41-1575043694:81001..81014Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_41supercontigscaffold_41:73999..81014 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
41.9706	40.9894	91.2027	92.7443	65.0049	50.623	36.8504	35.0578	29.5386	19.7793	19.3162	18.3734	3.19481	1.99628	10.5972	11.8405	2.66938	0.860359	3.91148	6.44465	2.39493	2.1609	16.3986	16.6756	60.8335	52.5211	5.76525	4.58549	11.1502	10.9877
Blast
[Close]
BLAST of TCONS_00064159 vs. Swiss-Prot (Human)
Match: MIPT3 (TRAF3-interacting protein 1 OS=Homo sapiens GN=TRAF3IP1 PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 6.076e-47
Identity = 75/129 (58.14%), Postives = 103/129 (79.84%), Query Frame = 2 
Query:   44 MDKSIIQKTHDTLGKAIKKPPLTEKLLNKPPFRFIHDIATEVIR-TGVFKGLYTEHELNSSNVSERDAKVAFLQKLVDCVGHVRGEPMSVRPSKCVAGHEPEKTNELLQFIGKLCLDKADTTDAVQKTL 427
            M+ +++++T + LGK I++PPLTEKLL+KPPFR++HDI TEVIR TG  KGLYT+ E+ S NV ++DAK++FLQK +D V  V GEP+  +P++ VAGHEPE+TNELLQ IGK CL+K  + DAV++ L
Sbjct:    1 MNAAVVRRTQEALGKVIRRPPLTEKLLSKPPFRYLHDIITEVIRMTGFMKGLYTDAEMKSDNVKDKDAKISFLQKAIDVVVMVSGEPLLAKPARIVAGHEPERTNELLQIIGKCCLNKLSSDDAVRRVL 129
The following BLAST results are available for this feature:
BLAST of TCONS_00064159 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MIPT36.076e-4758.14TRAF3-interacting protein 1 OS=Homo sapiens GN=TRA... [more]
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