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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064158 ID=TCONS_00064158|Name=TCONS_00064158|organism=Clytia hemisphaerica|type=transcript|length=4132bp ATTTTTTCTAAAAGGTTATTTCTTGTTACTTACTGTGACCTTCACTTCAC ATTGtggtttttcttcttctttacgTTCAGAcgaaaaaaagtgaaagaaa aaagttttgtcGAAATCTTCATGTTATAAACATTGAGAAGCTCTGTTGGG ATGACATAGAATTTTCAACTTGTAATGACAATCGAATAAAGTGATTTACT TGCTTATTATCTGCTGAATTGCTATGAATAGTAAAGTGACAATAAGGACA CGCTCTCCACGGTATAAGCCTTTTGTTGTACCAAATCGTTTAAAACCTCT TCCTGCTATTGAATCTCATCCTAGGAAGACGACAAGAAGAATGAACGATT TGCCATCGGTTTCTCAAGAATACATCAAGCCAAAAGTTGTTCGTTTCTAC AAAAATGGAGACCGTAATTTCAGAGGATCCCATGTCACGGTCACTCCTAG ACGTTTTCGTAACTTTGATAATTTATTGAATGAACTTACAAGGATTACAA ATCTTGCCTCTGGAGCACGCTATATTTTCACACCAGAATCCGGCTCGAGG GTAGAATCACTTGATCAACTTTCTGACGGTAAATCATATGTTTGTGGCTC ACATCCTAGATTGAAGAAAATCAATTATAACCATGCTCCTGATGGTTCAC AGCATATAAAGCATCCAAATAAAAACTTTGTTCCAGTACCTCCTGCTACA AATAAACTAAATGTAGAGAGCCGTCTCAATACAACAAACGTGAAACCAAA AGTGGTAAAGATCATAAGAAATGGAGTGGGTATTAACAAACAAACTGTTA AACTTTTACTTAACAAAAGAACAGCCCAAAGTTATGAACAGGTTATGGAT GATATAACTTCGATGGTTGGGGCCCAAGGTGGGTTTGTTAAGAAAATATA TGATACACAAGGAAACTTAGTGCAAAATTTGTCCACCTTGTTTGGTTCAG AGGATGTATTTATTGCAGTTGGTAGTGAAAAATTCAAATCTTCAGACATt cctaaaattttgaaagaatcaGGAGTTTCCTCCGAAATTAAAGAGCCCTT AGTACCATCACCTCCAAAATCGACACCAAGTAAAAAGAGAAACAaacatt tcattcaaaattcaccATACAACAAAAAGAAAGCATTCTCAAGTCATTCA AAACTACCTTCTATTAAAAAACGAAACGAACCAGAGGGGGCTTCATCAAG AGACACGTCTCCCGTAGAAAATGAAAACCACATTATCTATGAGGAAAAAG ATCTTCCTAAGGCAAAATCAGATAGTGAACGAGAGTCATCAAACGAATCG ATTAAAAGTTCAAAGCATGGATCAAAAACTAATACTCCACttccaaaaat tgaaagtgaaactAGCAAAGATTCAATTTCTCAACCATCTACTAGATCAA ATTCATCAGCTTCTagcaaaaatgaagaaaattttcatGTTGCTCTAAGC GATGTTGAATCTGACACTTCACCTCAGAGCAAAGAAAGCACCATGGTTAA AGATGAAAAGAGCCCCAGAAAGGATTCTCTTATCAGAAATGATACAAAGG AggaaaaagatgaagaaaataatgaagaaactTTGAAAGATGAAATAAAT GATTTACTTTCTTCTGATCAACCTGGAACAGAAATTGAACCTGAGAACAA GATTGTTTACAACGAAAGAAAAACTAAAGTTTTTGACAATAAATCAGAAA TTGAAAAGTATTACGACATCGGCAAAAAGCTAGGAGATGGTAACTTTGCT GTTGTGAAAGAAGTTACTGATAAAGAAAATGACATGAAATTTGCTTTGAA GATTATAGACGCTTCAAAAATGGAGGGTAAACTACCCATGTtacaaaatg aaatcaaaattcaaagagATTGTCGTCATCCAAACATTGTGCGTTTATTC CATGATATGCATTCACCGACAGAGATTTTTCTAGTTATGGAATTGATTTC AGGTGGTGATTTCTTTGATTTAGTTTCTACAAATGTCAGCTTTGAAGAGG AAGAAGCCAGTGGTTACATGAGAGATTTATGCAGTGGATTGGATTATCTT CACCAAAGGGGGATCGTGCATCGAGATATCAAACCtgaaaatctgatgGT ATATGAGCACAGTGGACAAATGTCACTGAAAATTGCAGACTTTGGTTTAG CAATGAAAGTGACCTCCCCAATTTTCACTATCTGTGGTACACCAACTTAT GTTGCTCCTGAAATCTTATCTGAAGAAGGATATGGCTTGGAAGTTGATGT ATGGGCTGCAGGTGTCATTCTTTACATTATGCTTTGCGGTTTTCCACCAT TCAGAAGTACAAAGCGTAAACAAACAGaattatttgatttgattgagaAG TGCGAATATGAATTCTTAGAACCATACTGGGATGATATTTCAAATGATGC CAAGGATTTGATTTCGAAAATTCTTGTCGCCGATAAAGATGATAGATTGA CTGCTAAGAAAGTGTTTGAACACCCTTGGCTCACTCAATATGGTTTGGGT CGAAATAATACCATATTAAAGTTATCACCTCGTAGGACCAATCGCTTCAA GACTGCTGCTCGTAGCATTCAATCCATTGAgagaatgaaaatgattttaa agttaGAGAGGGAAAAATTTATTGATGTTCATCAGGATGAGCATTTAATA TCAGAGGACAAAATGAGCCGCCAAAGCTCTATCGCGTCCAACAAAAGCAC ACCAATCACCAGTCGAGCAGGTACACCAGCCGTCTCTGCTGTGGAAAGTG AATCTGAAGATAGTGATTCTAGTCGAGAATCAACAAAGGATTCTATCCCT GCCAAGAAGGAAAAGGAGCCATCAGCAGTCAATTTACGCCAAGATTCTGA TCTCAAAGAGAAACTACCAGAACCTGAAAAAGAGACTTCATCTCATAACA TTCGTGAACATTCAGAGTTAAAGAGCGATCTACCAGAAGAAAGACTACCC GAAAAGGAGAAATCTATTGCCAATTTACGTGAAGACTCAGATCTCAAAGG AAAATTACCAGATGTTTCCGATACTGAGAGTTCTGATGAGGATACACCAA GAGAAAAGTCATCTCAGAACCTTAGCGAAGATTCGAACGTTAAAGAAAAA CTCACTGTAAAAGAACACTCTATTGCCAATCTACGTGAGGACTCAAGCGT CAAAGAAAAACTCTCTGAGAAAGAACCCTCTATTGCTAATCTACGTGAGG ACTCAACCGTCAAAGAAAAACTCTCTGAGAAAGAACCCTCTATTGCTAAT CTACGCGAGGACTCAAGTGTCAAAGAAAAACTCTCTGAAAAGGAGCTTTC TACTGTCAACTTACGTGAGGATTCAATTGTTAAAGAAAAACTCTCTAAAA AGGAGTACTCTATTGCAAATCTACGTGAGGATTCTGGTATTAAACAACAC TTGCCAGAAAAAGAGAAGTCCGTTGCAAATATGCGGGAAGACTCTGAAAT TAAGGACAAATTAACAGACAGTGAAAATTCAAAGTCTTCGTTAAATTTGA GAGAGAATTCAAAAGATGAAGAGAAGCTACCTAATGAACATGAGAGATCT ATTGTCAATCTTCGTGAGGACTCTCAAATTAAAGATGAGCTTCCGGATGG AAATGAAAATCCTGATCGATCGATGGTGAACCTTCGAGAAGACTCTGAGA TCAAGGATAATATACCTAATGAGAACAAAGAGAGTTCTGTTCTCAATTTA CGAGAACATTCTACTGTAAAGGAATCTTTACCGAAAAATGACAAGAGCTA ATTCAATAGCTCGTAAATTATTTGTatgaatatctttttattgaaggaGA ATCAAGTTTGCGCGAAAGtgaaaatttacataatttgagTTTTTGGGGTT TTTGAGTTATACTAATACCGTTTTTGGGTTCCTCTTTTTCTACGatctga aatattttatttaagtTCCTTTATTATCTTCaataaaaagacaacttttA AATGGTGACCTTCATTTATCAATATAAATGTAGATAATGAAAATCATAGC TGAAGCATATATATAacagatttattttttatattgacatttCGTAATAG CTTATATTATGATCAATATGCACAATTTTATACCTAATTATATAGGGAAT TTTATAATTGACACATTCTATTGGCTAATTTT Run BLAST on NCBI transcript from alignment at scaffold_41:55259..59640+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064158 ID=TCONS_00064158|Name=TCONS_00064158|organism=Clytia hemisphaerica|type=transcript|length=4382bp|location=Sequence derived from alignment at scaffold_41:55259..59640+ (Clytia hemisphaerica) ATTTTTTCTAAAAGGTTATTTCTTGTTACTTACTGTGACCTTCACTTCAC
ATTGtggtttttcttcttctttacgTTCAGAcgaaaaaaagtgaaagaaa
aaagttttgtcGAAATCTTCATGTTATAAACATTGAGAAGCTCTGTTGGG
ATGACATAGAATTTTCAACTTGTAATGACAATCGAATAAAGTGATTTACT
TGCTTATTATCTGCTGAATTGCTATGAATAGTAAAGTGACAATAAGGACA
CGCTCTCCACGGTATAAGCCTTTTGTTGTACCAAATCGTTTAAAACCTCT
TCCTGCTATTGAATCTCATCCTAGGAAGACGACAAGAAGAATGAACGATT
TGCCATCGGTTTCTCAAGAATACATCAAGCCAAAAGTTGTTCGTTTCTAC
AAAAATGGAGACCGTAATTTCAGAGGATCCCATGTCACGGTCACTCCTAG
ACGTTTTCGTAACTTTGATAATTTATTGAATGAACTTACAAGGATTACAA
ATCTTGCCTCTGGAGCACGCTATATTTTCACACCAGAATCCGGCTCGAGG
GTAGAATCACTTGATCAACTTTCTGACGGTAAATCATATGTTTGTGGCTC
ACATCCTAGATTGAAGAAAATCAATTATAACCATGCTCCTGATGGTTCAC
AGCATATAAAGCATCCAAATAAAAACTTTGTTCCAGTACCTCCTGCTACA
AATAAACTAAATGTAGAGAGCCGTCTCAATACAACAAACGTGAAACCAAA
AGTGGTAAAGATCATAAGAAATGGAGTGGGTATTAACAAACAAACTGTTA
AACTTTTACTTAACAAAAGAACAGCCCAAAGTTATGAACAGGTTATGGAT
GATATAACTTCGATGGTTGGGGCCCAAGGTGGGTTTGTTAAGAAAATATA
TGATACACAAGGAAACTTAGTGCAAAATTTGTCCACCTTGTTTGGTTCAG
AGGATGTATTTATTGCAGTTGGTAGTGAAAAATTCAAATCTTCAGACATt
cctaaaattttgaaagaatcaGGAGTTTCCTCCGAAATTAAAGAGCCCTT
AGTACCATCACCTCCAAAATCGACACCAAGTAAAAAGAGAAACAaacatt
tcattcaaaattcaccATACAACAAAAAGAAAGCATTCTCAAGTCATTCA
AAACTACCTTCTATTAAAAAACGAAACGAACCAGAGGGGGCTTCATCAAG
AGACACGTCTCCCGTAGAAAATGAAAACCACATTATCTATGAGGAAAAAG
ATCTTCCTAAGGCAAAATCAGATAGTGAACGAGAGTCATCAAACGAATCG
ATTAAAAGTTCAAAGCATGGATCAAAAACTAATACTCCACttccaaaaat
tgaaagtgaaactAGCAAAGATTCAATTTCTCAACCATCTACTAGATCAA
ATTCATCAGCTTCTagcaaaaatgaagaaaattttcatGTTGCTCTAAGC
GATGTTGAATCTGACACTTCACCTCAGAGCAAAGAAAGCACCATGGTTAA
AGATGAAAAGAGCCCCAGAAAGGATTCTCTTATCAGAAATGATACAAAGG
AggaaaaagatgaagaaaataatgaagaaactTTGAAAGATGAAATAAAT
GATTTACTTTCTTCTGATCAACCTGGAACAGAAATTGAACCTGAGAACAA
GATTGTTTACAACGAAAGAAAAACTAAAGTTTTTGACAATAAATCAGAAA
TTGAAAAGTATTACGACATCGGCAAAAAGCTAGGAGATGGTAACTTTGCT
GTTGTGAAAGAAGTTACTGATAAAGAAAATGACATGAAATTTGCTTTGAA
GATTATAGACGCTTCAAAAATGGAGGGTAAACTACCCATGTtacaaaatg
aaatcaaaattcaaagagATTGTCGTCATCCAAACATTGTGCGTTTATTC
CATGATATGCATTCACCGACAGAGATTTTTCTAGTTATGGAATTGATTTC
AGGTGGTGATTTCTTTGATTTAGTTTCTACAAATGTCAGCTTTGAAGAGG
AAGAAGCCAGTGGTTACATGAGAGATTTATGCAGTGGATTGGATTATCTT
CACCAAAGGGGGATCGTGCATCGAGATATCAAACCtgaaaatctgatggt
aagtcaTTTTTAAAATCGAAACAGAAAGTTAGGATCAAAGTGAAAGAAAA
GGGGCCTTGAATTATTATGTATGAATTGACATAACTTGATTACTTGAGAT
AAATAGGTGTTTCAATTCTTCTGGTCATTTAAGCAAATATGATTTTGGCT
CTTAAAATTTATACGCTTTCAATGCTGAAAGATAAAACTTTTTCCTTTGT
GGTATATTTTGCAAAACATTAACCAGCTATTTCACTTCACTCCTTCAGGT
ATATGAGCACAGTGGACAAATGTCACTGAAAATTGCAGACTTTGGTTTAG
CAATGAAAGTGACCTCCCCAATTTTCACTATCTGTGGTACACCAACTTAT
GTTGCTCCTGAAATCTTATCTGAAGAAGGATATGGCTTGGAAGTTGATGT
ATGGGCTGCAGGTGTCATTCTTTACATTATGCTTTGCGGTTTTCCACCAT
TCAGAAGTACAAAGCGTAAACAAACAGaattatttgatttgattgagaAG
TGCGAATATGAATTCTTAGAACCATACTGGGATGATATTTCAAATGATGC
CAAGGATTTGATTTCGAAAATTCTTGTCGCCGATAAAGATGATAGATTGA
CTGCTAAGAAAGTGTTTGAACACCCTTGGCTCACTCAATATGGTTTGGGT
CGAAATAATACCATATTAAAGTTATCACCTCGTAGGACCAATCGCTTCAA
GACTGCTGCTCGTAGCATTCAATCCATTGAgagaatgaaaatgattttaa
agttaGAGAGGGAAAAATTTATTGATGTTCATCAGGATGAGCATTTAATA
TCAGAGGACAAAATGAGCCGCCAAAGCTCTATCGCGTCCAACAAAAGCAC
ACCAATCACCAGTCGAGCAGGTACACCAGCCGTCTCTGCTGTGGAAAGTG
AATCTGAAGATAGTGATTCTAGTCGAGAATCAACAAAGGATTCTATCCCT
GCCAAGAAGGAAAAGGAGCCATCAGCAGTCAATTTACGCCAAGATTCTGA
TCTCAAAGAGAAACTACCAGAACCTGAAAAAGAGACTTCATCTCATAACA
TTCGTGAACATTCAGAGTTAAAGAGCGATCTACCAGAAGAAAGACTACCC
GAAAAGGAGAAATCTATTGCCAATTTACGTGAAGACTCAGATCTCAAAGG
AAAATTACCAGATGTTTCCGATACTGAGAGTTCTGATGAGGATACACCAA
GAGAAAAGTCATCTCAGAACCTTAGCGAAGATTCGAACGTTAAAGAAAAA
CTCACTGTAAAAGAACACTCTATTGCCAATCTACGTGAGGACTCAAGCGT
CAAAGAAAAACTCTCTGAGAAAGAACCCTCTATTGCTAATCTACGTGAGG
ACTCAACCGTCAAAGAAAAACTCTCTGAGAAAGAACCCTCTATTGCTAAT
CTACGCGAGGACTCAAGTGTCAAAGAAAAACTCTCTGAAAAGGAGCTTTC
TACTGTCAACTTACGTGAGGATTCAATTGTTAAAGAAAAACTCTCTAAAA
AGGAGTACTCTATTGCAAATCTACGTGAGGATTCTGGTATTAAACAACAC
TTGCCAGAAAAAGAGAAGTCCGTTGCAAATATGCGGGAAGACTCTGAAAT
TAAGGACAAATTAACAGACAGTGAAAATTCAAAGTCTTCGTTAAATTTGA
GAGAGAATTCAAAAGATGAAGAGAAGCTACCTAATGAACATGAGAGATCT
ATTGTCAATCTTCGTGAGGACTCTCAAATTAAAGATGAGCTTCCGGATGG
AAATGAAAATCCTGATCGATCGATGGTGAACCTTCGAGAAGACTCTGAGA
TCAAGGATAATATACCTAATGAGAACAAAGAGAGTTCTGTTCTCAATTTA
CGAGAACATTCTACTGTAAAGGAATCTTTACCGAAAAATGACAAGAGCTA
ATTCAATAGCTCGTAAATTATTTGTatgaatatctttttattgaaggaGA
ATCAAGTTTGCGCGAAAGtgaaaatttacataatttgagTTTTTGGGGTT
TTTGAGTTATACTAATACCGTTTTTGGGTTCCTCTTTTTCTACGatctga
aatattttatttaagtTCCTTTATTATCTTCaataaaaagacaacttttA
AATGGTGACCTTCATTTATCAATATAAATGTAGATAATGAAAATCATAGC
TGAAGCATATATATAacagatttattttttatattgacatttCGTAATAG
CTTATATTATGATCAATATGCACAATTTTATACCTAATTATATAGGGAAT
TTTATAATTGACACATTCTATTGGCTAATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00064158-exon-scaffold_41-1491911889:55259..57356 | TCONS_00064158-exon-scaffold_41-1491911889:55259..57356 | Clytia hemisphaerica | exon |
TCONS_00064158-exon-scaffold_41-1510915933:55259..57356 | TCONS_00064158-exon-scaffold_41-1510915933:55259..57356 | Clytia hemisphaerica | exon |
TCONS_00064158-exon-scaffold_41-1575043694:55259..57356 | TCONS_00064158-exon-scaffold_41-1575043694:55259..57356 | Clytia hemisphaerica | exon |
TCONS_00064158-exon-scaffold_41-1491911889:57607..59640 | TCONS_00064158-exon-scaffold_41-1491911889:57607..59640 | Clytia hemisphaerica | exon |
TCONS_00064158-exon-scaffold_41-1510915933:57607..59640 | TCONS_00064158-exon-scaffold_41-1510915933:57607..59640 | Clytia hemisphaerica | exon |
TCONS_00064158-exon-scaffold_41-1575043694:57607..59640 | TCONS_00064158-exon-scaffold_41-1575043694:57607..59640 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_41 | supercontig | scaffold_41:55259..59640 + |
Blast
BLAST of TCONS_00064158 vs. Swiss-Prot (Human)
Match: DCLK1 (Serine/threonine-protein kinase DCLK1 OS=Homo sapiens GN=DCLK1 PE=1 SV=2) HSP 1 Score: 332.413 bits (851), Expect = 1.137e-97 Identity = 160/340 (47.06%), Postives = 216/340 (63.53%), Query Frame = 2
Query: 1616 DQPGTEIEPENKIVYNERKTKVFDNKSEIEKYYDIGKKLGDGNFAVVKEVTDKENDMKFALKIIDASKMEGKLPMLQNEIKIQRDCRHPNIVRLFHDMHSPTEIFLVMELISGGDFFDLVSTNVSFEEEEASGYMRDLCSGLDYLHQRGIVHRDIKPENLMVYEHS-GQMSLKIADFGLAMKVTSPIFTICGTPTYVAPEILSEEGYGLEVDVWAAGVILYIMLCGFPPFRSTKRKQTELFDLIEKCEYEFLEPYWDDISNDAKDLISKILVADKDDRLTAKKVFEHPWLTQYGLGRNNTILKLSPRRTNRFKTAARSIQSIERMKMI----LKLEREKF 2620
D PG E+ E F + I + Y +G+ +GDGNFAVVKE ++ ++ALKII SK GK M+QNE+ I R +HPNIV L +M PTE++LVMEL+ GGD FD +++ + E +ASG + +L S + YLH IVHRDIKPENL+VYEH G SLK+ DFGLA V P++T+CGTPTYVAPEI++E GYGL+VD+WAAGVI YI+LCGFPPFR + Q LFD I + +F PYWD++S+ AK+LI+ +L+ D D R +A +V EHPW+ GL N L ++ + F T + + + +I L ER+ F
Sbjct: 369 DGPGEEVSEEG-----------FQIPATITERYKVGRTIGDGNFAVVKECVERSTAREYALKIIKKSKCRGKEHMIQNEVSILRRVKHPNIVLLIEEMDVPTELYLVMELVKGGDLFDAITSTNKYTERDASGMLYNLASAIKYLHSLNIVHRDIKPENLLVYEHQDGSKSLKLGDFGLATIVDGPLYTVCGTPTYVAPEIIAETGYGLKVDIWAAGVITYILLCGFPPFRGSGDDQEVLFDQILMGQVDFPSPYWDNVSDSAKELITMMLLVDVDQRFSAVQVLEHPWVNDDGLPENEHQLSVAGKIKKHFNTGPKPNSTAAGVSVIATTALDKERQVF 697 HSP 2 Score: 165.236 bits (417), Expect = 9.694e-42 Identity = 100/245 (40.82%), Postives = 143/245 (58.37%), Query Frame = 2
Query: 284 NRLKPLPAIESHPRKTTRRMNDLPSVSQEYIKPKVVRFYKNGDRNFRGSHVTVTPRRFRNFDNLLNELTRI----TNLASGARYIFTPESGSRVESLDQLSDGKSYVCGSHPRLKKINY--NHAPDGSQHIKHPNKNFVPVPPATNKLN-VESRLNTTNVKPKVVKIIRNGVGINKQTVKLLLNKRTAQSYEQVMDDITSMVGAQGGFVKKIYDTQGNLVQNLSTLFGSEDVFIAVGSEKFKSSD 997
+R+ LP+ + R L ++S E K K VRFY+NGDR F+G ++P RFR+F+ LL +LTR NL G R I+T + ++ SLDQL +G+SYVCGS KK+ Y N P+ S ++K + + AT K + E R N ++PK+V IIR+GV ++ V++LLNK+TA S+EQV+ DIT + G VK++Y G V L FG +D+FIA G EKF+ D
Sbjct: 25 SRVNGLPSPTHSAHCSFYRTRTLQTLSSEK-KAKKVRFYRNGDRYFKGIVYAISPDRFRSFEALLADLTRTLSDNVNLPQGVRTIYTIDGLKKISSLDQLVEGESYVCGSIEPFKKLEYTKNVNPNWSVNVKTTSASRAVSSLATAKGSPSEVRENKDFIRPKLVTIIRSGVK-PRKAVRILLNKKTAHSFEQVLTDITDAIKLDSGVVKRLYTLDGKQVMCLQDFFGDDDIFIACGPEKFRYQD 267
The following BLAST results are available for this feature:
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