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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064156 ID=TCONS_00064156|Name=TCONS_00064156|organism=Clytia hemisphaerica|type=transcript|length=3973bp aagacTCTGTGGTGGAGATCATAACAACATTACAAACTTACTTGTTCAAC TTTGATTTCTTTCTTGCTGTTTGAAAAGGGACTATTCATCGAGAAGCAAA AGCAACCTTAGTTACTATTTTGTAATTAACTTTTATGCAGTTGTTTGATC ATCACCAGGGGCAAAGAAGACGACAAGAAGAATGAACGATTTGCCATCGG TTTCTCAAGAATACATCAAGCCAAAAGTTGTTCGTTTCTACAAAAATGGA GACCGTAATTTCAGAGGATCCCATGTCACGGTCACTCCTAGACGTTTTCG TAACTTTGATAATTTATTGAATGAACTTACAAGGATTACAAATCTTGCCT CTGGAGCACGCTATATTTTCACACCAGAATCCGGCTCGAGGGTAGAATCA CTTGATCAACTTTCTGACGGTAAATCATATGTTTGTGGCTCACATCCTAG ATTGAAGAAAATCAATTATAACCATGCTCCTGATGGTTCACAGCATATAA AGCATCCAAATAAAAACTTTGTTCCAGTACCTCCTGCTACAAATAAACTA AATGTAGAGAGCCGTCTCAATACAACAAACGTGAAACCAAAAGTGGTAAA GATCATAAGAAATGGAGTGGGTATTAACAAACAAACTGTTAAACTTTTAC TTAACAAAAGAACAGCCCAAAGTTATGAACAGGTTATGGATGATATAACT TCGATGGTTGGGGCCCAAGGTGGGTTTGTTAAGAAAATATATGATACACA AGGAAACTTAGTGCAAAATTTGTCCACCTTGTTTGGTTCAGAGGATGTAT TTATTGCAGTTGGTAGTGAAAAATTCAAATCTTCAGACATtcctaaaatt ttgaaagaatcaGGAGTTTCCTCCGAAATTAAAGAGCCCTTAGTACCATC ACCTCCAAAATCGACACCAAGTAAAAAGAGAAACAaacatttcattcaaa attcaccATACAACAAAAAGAAAGCATTCTCAAGTCATTCAAAACTACCT TCTATTAAAAAACGAAACGAACCAGAGGGGGCTTCATCAAGAGACACGTC TCCCGTAGAAAATGAAAACCACATTATCTATGAGGAAAAAGATCTTCCTA AGGCAAAATCAGATAGTGAACGAGAGTCATCAAACGAATCGATTAAAAGT TCAAAGCATGGATCAAAAACTAATACTCCACttccaaaaattgaaagtga aactAGCAAAGATTCAATTTCTCAACCATCTACTAGATCAAATTCATCAG CTTCTagcaaaaatgaagaaaattttcatGTTGCTCTAAGCGATGTTGAA TCTGACACTTCACCTCAGAGCAAAGAAAGCACCATGGTTAAAGATGAAAA GAGCCCCAGAAAGGATTCTCTTATCAGAAATGATACAAAGGAggaaaaag atgaagaaaataatgaagaaactTTGAAAGATGAAATAAATGATTTACTT TCTTCTGATCAACCTGGAACAGAAATTGAACCTGAGAACAAGATTGTTTA CAACGAAAGAAAAACTAAAGTTTTTGACAATAAATCAGAAATTGAAAAGT ATTACGACATCGGCAAAAAGCTAGGAGATGGTAACTTTGCTGTTGTGAAA GAAGTTACTGATAAAGAAAATGACATGAAATTTGCTTTGAAGATTATAGA CGCTTCAAAAATGGAGGGTAAACTACCCATGTtacaaaatgaaatcaaaa ttcaaagagATTGTCGTCATCCAAACATTGTGCGTTTATTCCATGATATG CATTCACCGACAGAGATTTTTCTAGTTATGGAATTGATTTCAGGTGGTGA TTTCTTTGATTTAGTTTCTACAAATGTCAGCTTTGAAGAGGAAGAAGCCA GTGGTTACATGAGAGATTTATGCAGTGGATTGGATTATCTTCACCAAAGG GGGATCGTGCATCGAGATATCAAACCtgaaaatctgatgGTATATGAGCA CAGTGGACAAATGTCACTGAAAATTGCAGACTTTGGTTTAGCAATGAAAG TGACCTCCCCAATTTTCACTATCTGTGGTACACCAACTTATGTTGCTCCT GAAATCTTATCTGAAGAAGGATATGGCTTGGAAGTTGATGTATGGGCTGC AGGTGTCATTCTTTACATTATGCTTTGCGGTTTTCCACCATTCAGAAGTA CAAAGCGTAAACAAACAGaattatttgatttgattgagaAGTGCGAATAT GAATTCTTAGAACCATACTGGGATGATATTTCAAATGATGCCAAGGATTT GATTTCGAAAATTCTTGTCGCCGATAAAGATGATAGATTGACTGCTAAGA AAGTGTTTGAACACCCTTGGCTCACTCAATATGGTTTGGGTCGAAATAAT ACCATATTAAAGTTATCACCTCGTAGGACCAATCGCTTCAAGACTGCTGC TCGTAGCATTCAATCCATTGAgagaatgaaaatgattttaaagttaGAGA GGGAAAAATTTATTGATGTTCATCAGGATGAGCATTTAATATCAGAGGAC AAAATGAGCCGCCAAAGCTCTATCGCGTCCAACAAAAGCACACCAATCAC CAGTCGAGCAGGTACACCAGCCGTCTCTGCTGTGGAAAGTGAATCTGAAG ATAGTGATTCTAGTCGAGAATCAACAAAGGATTCTATCCCTGCCAAGAAG GAAAAGGAGCCATCAGCAGTCAATTTACGCCAAGATTCTGATCTCAAAGA GAAACTACCAGAACCTGAAAAAGAGACTTCATCTCATAACATTCGTGAAC ATTCAGAGTTAAAGAGCGATCTACCAGAAGAAAGACTACCCGAAAAGGAG AAATCTATTGCCAATTTACGTGAAGACTCAGATCTCAAAGGAAAATTACC AGATGTTTCCGATACTGAGAGTTCTGATGAGGATACACCAAGAGAAAAGT CATCTCAGAACCTTAGCGAAGATTCGAACGTTAAAGAAAAACTCACTGTA AAAGAACACTCTATTGCCAATCTACGTGAGGACTCAAGCGTCAAAGAAAA ACTCTCTGAGAAAGAACCCTCTATTGCTAATCTACGTGAGGACTCAACCG TCAAAGAAAAACTCTCTGAGAAAGAACCCTCTATTGCTAATCTACGCGAG GACTCAAGTGTCAAAGAAAAACTCTCTGAAAAGGAGCTTTCTACTGTCAA CTTACGTGAGGATTCAATTGTTAAAGAAAAACTCTCTAAAAAGGAGTACT CTATTGCAAATCTACGTGAGGATTCTGGTATTAAACAACACTTGCCAGAA AAAGAGAAGTCCGTTGCAAATATGCGGGAAGACTCTGAAATTAAGGACAA ATTAACAGACAGTGAAAATTCAAAGTCTTCGTTAAATTTGAGAGAGAATT CAAAAGATGAAGAGAAGCTACCTAATGAACATGAGAGATCTATTGTCAAT CTTCGTGAGGACTCTCAAATTAAAGATGAGCTTCCGGATGGAAATGAAAA TCCTGATCGATCGATGGTGAACCTTCGAGAAGACTCTGAGATCAAGGATA ATATACCTAATGAGAACAAAGAGAGTTCTGTTCTCAATTTACGAGAACAT TCTACTGTAAAGGAATCTTTACCGAAAAATGACAAGAGCTAATTCAATAG CTCGTAAATTATTTGTatgaatatctttttattgaaggaGAATCAAGTTT GCGCGAAAGtgaaaatttacataatttgagTTTTTGGGGTTTTTGAGTTA TACTAATACCGTTTTTGGGTTCCTCTTTTTCTACGatctgaaatatttta tttaagtTCCTTTATTATCTTCaataaaaagacaacttttAAATGGTGAC CTTCATTTATCAATATAAATGTAGATAATGAAAATCATAGCTGAAGCATA TATATAacagatttattttttatattgacatttCGTAATAGCTTATATTA TGATCAATATGCACAATTTTATACCTAATTATATAGGGAATTTTATAATT GACACATTCTATTGGCTAATTTT Run BLAST on NCBI transcript from alignment at scaffold_41:55058..59640+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064156 ID=TCONS_00064156|Name=TCONS_00064156|organism=Clytia hemisphaerica|type=transcript|length=4583bp|location=Sequence derived from alignment at scaffold_41:55058..59640+ (Clytia hemisphaerica) aagacTCTGTGGTGGAGATCATAACAACATTACAAACTTACTTGTTCAAC
TTTGATTTCTTTCTTGCTGTTTGAAAAGGGACTATTCATCGAGAAGCAAA
AGCAACCTTAGTTACTATTTTGTAATTAACTTTTATGCAGTTGTTTGATC
ATCACCAGGGGCAAAGTAAGTATTCAGTTTATATAATCACGTTGGTAACA
GATTTTTTCTAAAAGGTTATTTCTTGTTACTTACTGTGACCTTCACTTCA
CATTGtggtttttcttcttctttacgTTCAGAcgaaaaaaagtgaaagaa
aaaagttttgtcGAAATCTTCATGTTATAAACATTGAGAAGCTCTGTTGG
GATGACATAGAATTTTCAACTTGTAATGACAATCGAATAAAGTGATTTAC
TTGCTTATTATCTGCTGAATTGCTATGAATAGTAAAGTGACAATAAGGAC
ACGCTCTCCACGGTATAAGCCTTTTGTTGTACCAAATCGTTTAAAACCTC
TTCCTGCTATTGAATCTCATCCTAGGAAGACGACAAGAAGAATGAACGAT
TTGCCATCGGTTTCTCAAGAATACATCAAGCCAAAAGTTGTTCGTTTCTA
CAAAAATGGAGACCGTAATTTCAGAGGATCCCATGTCACGGTCACTCCTA
GACGTTTTCGTAACTTTGATAATTTATTGAATGAACTTACAAGGATTACA
AATCTTGCCTCTGGAGCACGCTATATTTTCACACCAGAATCCGGCTCGAG
GGTAGAATCACTTGATCAACTTTCTGACGGTAAATCATATGTTTGTGGCT
CACATCCTAGATTGAAGAAAATCAATTATAACCATGCTCCTGATGGTTCA
CAGCATATAAAGCATCCAAATAAAAACTTTGTTCCAGTACCTCCTGCTAC
AAATAAACTAAATGTAGAGAGCCGTCTCAATACAACAAACGTGAAACCAA
AAGTGGTAAAGATCATAAGAAATGGAGTGGGTATTAACAAACAAACTGTT
AAACTTTTACTTAACAAAAGAACAGCCCAAAGTTATGAACAGGTTATGGA
TGATATAACTTCGATGGTTGGGGCCCAAGGTGGGTTTGTTAAGAAAATAT
ATGATACACAAGGAAACTTAGTGCAAAATTTGTCCACCTTGTTTGGTTCA
GAGGATGTATTTATTGCAGTTGGTAGTGAAAAATTCAAATCTTCAGACAT
tcctaaaattttgaaagaatcaGGAGTTTCCTCCGAAATTAAAGAGCCCT
TAGTACCATCACCTCCAAAATCGACACCAAGTAAAAAGAGAAACAaacat
ttcattcaaaattcaccATACAACAAAAAGAAAGCATTCTCAAGTCATTC
AAAACTACCTTCTATTAAAAAACGAAACGAACCAGAGGGGGCTTCATCAA
GAGACACGTCTCCCGTAGAAAATGAAAACCACATTATCTATGAGGAAAAA
GATCTTCCTAAGGCAAAATCAGATAGTGAACGAGAGTCATCAAACGAATC
GATTAAAAGTTCAAAGCATGGATCAAAAACTAATACTCCACttccaaaaa
ttgaaagtgaaactAGCAAAGATTCAATTTCTCAACCATCTACTAGATCA
AATTCATCAGCTTCTagcaaaaatgaagaaaattttcatGTTGCTCTAAG
CGATGTTGAATCTGACACTTCACCTCAGAGCAAAGAAAGCACCATGGTTA
AAGATGAAAAGAGCCCCAGAAAGGATTCTCTTATCAGAAATGATACAAAG
GAggaaaaagatgaagaaaataatgaagaaactTTGAAAGATGAAATAAA
TGATTTACTTTCTTCTGATCAACCTGGAACAGAAATTGAACCTGAGAACA
AGATTGTTTACAACGAAAGAAAAACTAAAGTTTTTGACAATAAATCAGAA
ATTGAAAAGTATTACGACATCGGCAAAAAGCTAGGAGATGGTAACTTTGC
TGTTGTGAAAGAAGTTACTGATAAAGAAAATGACATGAAATTTGCTTTGA
AGATTATAGACGCTTCAAAAATGGAGGGTAAACTACCCATGTtacaaaat
gaaatcaaaattcaaagagATTGTCGTCATCCAAACATTGTGCGTTTATT
CCATGATATGCATTCACCGACAGAGATTTTTCTAGTTATGGAATTGATTT
CAGGTGGTGATTTCTTTGATTTAGTTTCTACAAATGTCAGCTTTGAAGAG
GAAGAAGCCAGTGGTTACATGAGAGATTTATGCAGTGGATTGGATTATCT
TCACCAAAGGGGGATCGTGCATCGAGATATCAAACCtgaaaatctgatgg
taagtcaTTTTTAAAATCGAAACAGAAAGTTAGGATCAAAGTGAAAGAAA
AGGGGCCTTGAATTATTATGTATGAATTGACATAACTTGATTACTTGAGA
TAAATAGGTGTTTCAATTCTTCTGGTCATTTAAGCAAATATGATTTTGGC
TCTTAAAATTTATACGCTTTCAATGCTGAAAGATAAAACTTTTTCCTTTG
TGGTATATTTTGCAAAACATTAACCAGCTATTTCACTTCACTCCTTCAGG
TATATGAGCACAGTGGACAAATGTCACTGAAAATTGCAGACTTTGGTTTA
GCAATGAAAGTGACCTCCCCAATTTTCACTATCTGTGGTACACCAACTTA
TGTTGCTCCTGAAATCTTATCTGAAGAAGGATATGGCTTGGAAGTTGATG
TATGGGCTGCAGGTGTCATTCTTTACATTATGCTTTGCGGTTTTCCACCA
TTCAGAAGTACAAAGCGTAAACAAACAGaattatttgatttgattgagaA
GTGCGAATATGAATTCTTAGAACCATACTGGGATGATATTTCAAATGATG
CCAAGGATTTGATTTCGAAAATTCTTGTCGCCGATAAAGATGATAGATTG
ACTGCTAAGAAAGTGTTTGAACACCCTTGGCTCACTCAATATGGTTTGGG
TCGAAATAATACCATATTAAAGTTATCACCTCGTAGGACCAATCGCTTCA
AGACTGCTGCTCGTAGCATTCAATCCATTGAgagaatgaaaatgatttta
aagttaGAGAGGGAAAAATTTATTGATGTTCATCAGGATGAGCATTTAAT
ATCAGAGGACAAAATGAGCCGCCAAAGCTCTATCGCGTCCAACAAAAGCA
CACCAATCACCAGTCGAGCAGGTACACCAGCCGTCTCTGCTGTGGAAAGT
GAATCTGAAGATAGTGATTCTAGTCGAGAATCAACAAAGGATTCTATCCC
TGCCAAGAAGGAAAAGGAGCCATCAGCAGTCAATTTACGCCAAGATTCTG
ATCTCAAAGAGAAACTACCAGAACCTGAAAAAGAGACTTCATCTCATAAC
ATTCGTGAACATTCAGAGTTAAAGAGCGATCTACCAGAAGAAAGACTACC
CGAAAAGGAGAAATCTATTGCCAATTTACGTGAAGACTCAGATCTCAAAG
GAAAATTACCAGATGTTTCCGATACTGAGAGTTCTGATGAGGATACACCA
AGAGAAAAGTCATCTCAGAACCTTAGCGAAGATTCGAACGTTAAAGAAAA
ACTCACTGTAAAAGAACACTCTATTGCCAATCTACGTGAGGACTCAAGCG
TCAAAGAAAAACTCTCTGAGAAAGAACCCTCTATTGCTAATCTACGTGAG
GACTCAACCGTCAAAGAAAAACTCTCTGAGAAAGAACCCTCTATTGCTAA
TCTACGCGAGGACTCAAGTGTCAAAGAAAAACTCTCTGAAAAGGAGCTTT
CTACTGTCAACTTACGTGAGGATTCAATTGTTAAAGAAAAACTCTCTAAA
AAGGAGTACTCTATTGCAAATCTACGTGAGGATTCTGGTATTAAACAACA
CTTGCCAGAAAAAGAGAAGTCCGTTGCAAATATGCGGGAAGACTCTGAAA
TTAAGGACAAATTAACAGACAGTGAAAATTCAAAGTCTTCGTTAAATTTG
AGAGAGAATTCAAAAGATGAAGAGAAGCTACCTAATGAACATGAGAGATC
TATTGTCAATCTTCGTGAGGACTCTCAAATTAAAGATGAGCTTCCGGATG
GAAATGAAAATCCTGATCGATCGATGGTGAACCTTCGAGAAGACTCTGAG
ATCAAGGATAATATACCTAATGAGAACAAAGAGAGTTCTGTTCTCAATTT
ACGAGAACATTCTACTGTAAAGGAATCTTTACCGAAAAATGACAAGAGCT
AATTCAATAGCTCGTAAATTATTTGTatgaatatctttttattgaaggaG
AATCAAGTTTGCGCGAAAGtgaaaatttacataatttgagTTTTTGGGGT
TTTTGAGTTATACTAATACCGTTTTTGGGTTCCTCTTTTTCTACGatctg
aaatattttatttaagtTCCTTTATTATCTTCaataaaaagacaactttt
AAATGGTGACCTTCATTTATCAATATAAATGTAGATAATGAAAATCATAG
CTGAAGCATATATATAacagatttattttttatattgacatttCGTAATA
GCTTATATTATGATCAATATGCACAATTTTATACCTAATTATATAGGGAA
TTTTATAATTGACACATTCTATTGGCTAATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00064156-exon-scaffold_41-1491911889:55058..55222 | TCONS_00064156-exon-scaffold_41-1491911889:55058..55222 | Clytia hemisphaerica | exon |
TCONS_00064156-exon-scaffold_41-1510915933:55058..55222 | TCONS_00064156-exon-scaffold_41-1510915933:55058..55222 | Clytia hemisphaerica | exon |
TCONS_00064156-exon-scaffold_41-1575043694:55058..55222 | TCONS_00064156-exon-scaffold_41-1575043694:55058..55222 | Clytia hemisphaerica | exon |
TCONS_00064156-exon-scaffold_41-1491911889:55583..57356 | TCONS_00064156-exon-scaffold_41-1491911889:55583..57356 | Clytia hemisphaerica | exon |
TCONS_00064156-exon-scaffold_41-1510915933:55583..57356 | TCONS_00064156-exon-scaffold_41-1510915933:55583..57356 | Clytia hemisphaerica | exon |
TCONS_00064156-exon-scaffold_41-1575043694:55583..57356 | TCONS_00064156-exon-scaffold_41-1575043694:55583..57356 | Clytia hemisphaerica | exon |
TCONS_00064156-exon-scaffold_41-1491911889:57607..59640 | TCONS_00064156-exon-scaffold_41-1491911889:57607..59640 | Clytia hemisphaerica | exon |
TCONS_00064156-exon-scaffold_41-1510915933:57607..59640 | TCONS_00064156-exon-scaffold_41-1510915933:57607..59640 | Clytia hemisphaerica | exon |
TCONS_00064156-exon-scaffold_41-1575043694:57607..59640 | TCONS_00064156-exon-scaffold_41-1575043694:57607..59640 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_41 | supercontig | scaffold_41:55058..59640 + |
Blast
BLAST of TCONS_00064156 vs. Swiss-Prot (Human)
Match: DCLK1 (Serine/threonine-protein kinase DCLK1 OS=Homo sapiens GN=DCLK1 PE=1 SV=2) HSP 1 Score: 332.413 bits (851), Expect = 7.747e-98 Identity = 160/340 (47.06%), Postives = 216/340 (63.53%), Query Frame = 2
Query: 1457 DQPGTEIEPENKIVYNERKTKVFDNKSEIEKYYDIGKKLGDGNFAVVKEVTDKENDMKFALKIIDASKMEGKLPMLQNEIKIQRDCRHPNIVRLFHDMHSPTEIFLVMELISGGDFFDLVSTNVSFEEEEASGYMRDLCSGLDYLHQRGIVHRDIKPENLMVYEHS-GQMSLKIADFGLAMKVTSPIFTICGTPTYVAPEILSEEGYGLEVDVWAAGVILYIMLCGFPPFRSTKRKQTELFDLIEKCEYEFLEPYWDDISNDAKDLISKILVADKDDRLTAKKVFEHPWLTQYGLGRNNTILKLSPRRTNRFKTAARSIQSIERMKMI----LKLEREKF 2461
D PG E+ E F + I + Y +G+ +GDGNFAVVKE ++ ++ALKII SK GK M+QNE+ I R +HPNIV L +M PTE++LVMEL+ GGD FD +++ + E +ASG + +L S + YLH IVHRDIKPENL+VYEH G SLK+ DFGLA V P++T+CGTPTYVAPEI++E GYGL+VD+WAAGVI YI+LCGFPPFR + Q LFD I + +F PYWD++S+ AK+LI+ +L+ D D R +A +V EHPW+ GL N L ++ + F T + + + +I L ER+ F
Sbjct: 369 DGPGEEVSEEG-----------FQIPATITERYKVGRTIGDGNFAVVKECVERSTAREYALKIIKKSKCRGKEHMIQNEVSILRRVKHPNIVLLIEEMDVPTELYLVMELVKGGDLFDAITSTNKYTERDASGMLYNLASAIKYLHSLNIVHRDIKPENLLVYEHQDGSKSLKLGDFGLATIVDGPLYTVCGTPTYVAPEIIAETGYGLKVDIWAAGVITYILLCGFPPFRGSGDDQEVLFDQILMGQVDFPSPYWDNVSDSAKELITMMLLVDVDQRFSAVQVLEHPWVNDDGLPENEHQLSVAGKIKKHFNTGPKPNSTAAGVSVIATTALDKERQVF 697 HSP 2 Score: 163.31 bits (412), Expect = 3.869e-41 Identity = 97/227 (42.73%), Postives = 136/227 (59.91%), Query Frame = 2
Query: 179 RMNDLPSVSQEYIKPKVVRFYKNGDRNFRGSHVTVTPRRFRNFDNLLNELTRI----TNLASGARYIFTPESGSRVESLDQLSDGKSYVCGSHPRLKKINY--NHAPDGSQHIKHPNKNFVPVPPATNKLN-VESRLNTTNVKPKVVKIIRNGVGINKQTVKLLLNKRTAQSYEQVMDDITSMVGAQGGFVKKIYDTQGNLVQNLSTLFGSEDVFIAVGSEKFKSSD 838
R L ++S E K K VRFY+NGDR F+G ++P RFR+F+ LL +LTR NL G R I+T + ++ SLDQL +G+SYVCGS KK+ Y N P+ S ++K + + AT K + E R N ++PK+V IIR+GV ++ V++LLNK+TA S+EQV+ DIT + G VK++Y G V L FG +D+FIA G EKF+ D
Sbjct: 43 RTRTLQTLSSEK-KAKKVRFYRNGDRYFKGIVYAISPDRFRSFEALLADLTRTLSDNVNLPQGVRTIYTIDGLKKISSLDQLVEGESYVCGSIEPFKKLEYTKNVNPNWSVNVKTTSASRAVSSLATAKGSPSEVRENKDFIRPKLVTIIRSGVK-PRKAVRILLNKKTAHSFEQVLTDITDAIKLDSGVVKRLYTLDGKQVMCLQDFFGDDDIFIACGPEKFRYQD 267
The following BLAST results are available for this feature:
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