TCONS_00064155 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064155
Unique NameTCONS_00064155
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1604

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064155 ID=TCONS_00064155|Name=TCONS_00064155|organism=Clytia hemisphaerica|type=transcript|length=1604bp
cctgtgaaaatggtaattataccacatttctacaagaagttgattttttc
ttcttcatttttcattttcattttccttttttttctcaaattttttactt
gataatattccactcacgaatatctttttaacgagcacaaaatcgcatct
tgattcgaattcaatcaaaagttacagctatttttgtctccagctgcaaa
ttatttcgagacagactttaatcacccatcagaatttgaaagccctccct
tttagacgtaaagatttctagtgaagaaattttcaaggaaattGTGCTGA
AACTCTCTAAATTAGCACAGTGTTCGCCCAAAAATACATCCATATGGAAT
CATAGCAGATCATAGAACTATTGTAACCttactttgagaaaaatattttt
gtatcacGTTTGAACAAGAAATTTTTGCATAGtatgtttatttcaatcag
gataacattctcacttctgttcttataaatttacatttcggatttttttg
cttccaatgatggtacatcaaagaaaagccacTTTGaattagatttataa
aagatttcaacgaccatttaggtcattaccgagacgttctctccatctat
atctttattaccttcatgccATAAGTGACGCAAAaccttcaaaattttaa
accaaCAGAAGGGTGATATCAGAGCGCAGTTTAGCCTGTGAAATCTTGAA
TCTTCAATTctattatcaaattttcaatcatttttttcaattcatcaatC
GCAAACTCAAATTTCTgtaattataaaataaaaatcagtAGCAATTCTAA
ATAATttctaataaatttttttaagtctAAATGAAGAGGAAGATTCAAAC
AAGAATCTCGTCACCGGAAAAGTACACAGTATCAAcaacatttctttttc
tttgtttcctTTTGTTGATCCAAACTTTGAGTATTACCAGATAATTGAAT
ATTATTGCCCCCATTATTTTCGAGCTCACCATCTGTGACATCCTCAAGTA
ATTGTCTGGTTAAAGATAGAAAAGCTGCTTCAACATTAGAACCATTCTTA
GAGCTTGTCTCAACAACCGTTAAATTCATGCGGTCAGCAAAGACTTGTAC
ATCCTCAAGTAATTGTCTGGTTAAAGATAGAAAAGCTGCTTCAACATTAG
AACCATTCTTAGAGCTTGTCTCAACAACCGTTAAATTCATGCGGTCAGCA
AAGACTTGTACATCCTCCCTACTCACTTTACGGTGTGATTCTAGATCAGT
TTTAGTTCCTATAATCATTTTCTTAGCACGCTCGTCAGCTTGCTCCCCTG
CATCAGTTAACCAGTTACCAAGTCTTATGAACGAATCAGGATCAGTGATA
TCATAAACTAAACATATACCACGAGCTCCTCGATAATAAGTATTCACAAT
AGTACGGAATCTTTCCTGTCCAGCGGAATCCCAGATATTCAATTTGATAG
TTTTTCCCATCATCTCAACTGTGCGTACCTTAAAGTCCACTCCAATGGTG
TTTACATAATTTTCTGTGAAATTCTGATCAACAAACCGCCTGAGTAAACA
GGATTTTCCAACTCCTGCTTCTCCAACGATAATAATTTTGAATACAAAGT
CTGC
Run BLAST on NCBI

transcript from alignment at scaffold_41:40320..42289+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064155 ID=TCONS_00064155|Name=TCONS_00064155|organism=Clytia hemisphaerica|type=transcript|length=1970bp|location=Sequence derived from alignment at scaffold_41:40320..42289+ (Clytia hemisphaerica)
cctgtgaaaatggtaattataccacatttctacaagaagttgattttttc
ttcttcatttttcattttcattttccttttttttctcaaattttttactt
gataatattccactcacgaatatctttttaacgagcacaaaatcgcatct
tgattcgaattcaatcaaaagttacagctatttttgtctccagctgcaaa
ttatttcgagacagactttaatcacccatcagaatttgaaagccctccct
tttagacgtaaagatttctagtgaagaaattttcaaggaaattGTGCTGA
AACTCTCTAAATTAGCACAGTGTTCGCCCAAAAATACATCCATATGGAAT
CATAGCAGATCATAGAACTATTGTAACCttactttgagaaaaatattttt
gtatcacGTTTGAACAAGAAATTTTTGCATAGtatgtttatttcaatcag
gataacattctcacttctgttcttataaatttacatttcggatttttttg
cttccaatgatggtacatcaaagaaaagccacTTTGaattagatttataa
aagatttcaacgaccatttaggtcattaccgagacgttctctccatctat
atctttattaccttcatgccATAAGTGACGCAAAaccttcaaaattttaa
accaaCAGAAGGGTGATATCAGAGCGCAGTTTAGCCTGTGAAATCTTGAA
TCTTCAATTctattatcaaattttcaatcatttttttcaattcatcaatC
GCAAACTCAAATTTCTgtaattataaaataaaaatcagtAGCAATTCTAA
ATAATttctaataaatttttttaagtctAAATGAAGAGGAAGATTCAAAC
AAGAATCTCGTCACCGGAAAAGTACACAGTATCAAcaacatttctttttc
tttgtttcctTTTGTTGATCCAAACTTTGAGTATTACCAGATAATTGAAT
ATTATTGCCCCCATTATTTTCGAGCTCACCATCTGTGACATCCTCAAGTA
ATTGTCTGGTTAAAGATAGAAAAGCTGCTTCAACATTAGAACCATTCTTA
GAGCTTGTCTCAACAACCGTTAAATTCATGCGGTCAGCAAAGACTTGTAC
ATCCTCCCTACTCACTTTACGGTGTGATTCTAGATCAGTTTTAGTTCCTA
TAATCATTTTCTTAGCACGCTCGTCAGCTTGCTCCCCTGCATCAGTTAAC
CAGTTACCAAGTCTTATGAACGAATCAGGATCAGTGATATCATAAACTAA
ACATATACCACGAGCTCCTCGATAATAAGTATTCACAATAGTACGGAATC
TTTCCTGTCCAGCAGAATCCCAGATATTCAATTTGATNCACCGGAAAAGT
ACACAGTATCAAcaacatttctttttctttgtttcctTTTGTTGATCCAA
ACTTTGAGTATTACCAGATAATTGAATATTATTGCCCCCATTATTTTCGA
GCTCACCATCTGTGACATCCTCAAGTAATTGTCTGGTTAAAGATAGAAAA
GCTGCTTCAACATTAGAACCATTCTTAGAGCTTGTCTCAACAACCGTTAA
ATTCATGCGGTCAGCAAAGACTTGTACATCCTCCCTACTCACTTTACGGT
GTGATTCTAGATCAGTTTTAGTTCCTATAATCATTTTCTTAGCACGCTCG
TCAGCTTGCTCCCCTGCATCAGTTAACCAGTTACCAAGTCTTATGAACGA
ATCAGGATCAGTGATATCATAAACTAAACATATACCACGAGCTCCTCGAT
AATAAGTATTCACAATAGTACGGAATCTTTCCTGTCCAGCGGAATCCCAG
ATATTCAATTTGATAGTTTTTCCCATCATCTCAACTGTGCGTACCTTAAA
GTCCACTCCAATGGTGTTTACATAATTTTCTGTGAAATTCTGATCAACAA
ACCGCCTGAGTAAACAGGATTTTCCAACTCCTGCTTCTCCAACGATAATA
ATTTTGAATACAAAGTCTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040227XLOC_040227Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064155-exon-scaffold_41-1491911889:40320..41419TCONS_00064155-exon-scaffold_41-1491911889:40320..41419Clytia hemisphaericaexon
TCONS_00064155-exon-scaffold_41-1510915933:40320..41419TCONS_00064155-exon-scaffold_41-1510915933:40320..41419Clytia hemisphaericaexon
TCONS_00064155-exon-scaffold_41-1575043694:40320..41419TCONS_00064155-exon-scaffold_41-1575043694:40320..41419Clytia hemisphaericaexon
TCONS_00064155-exon-scaffold_41-1491911889:41786..42289TCONS_00064155-exon-scaffold_41-1491911889:41786..42289Clytia hemisphaericaexon
TCONS_00064155-exon-scaffold_41-1510915933:41786..42289TCONS_00064155-exon-scaffold_41-1510915933:41786..42289Clytia hemisphaericaexon
TCONS_00064155-exon-scaffold_41-1575043694:41786..42289TCONS_00064155-exon-scaffold_41-1575043694:41786..42289Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_41supercontigscaffold_41:40320..42289 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.4807	16.717	5.31056	5.18024	31.8057	23.4456	21.6829	21.8256	10.4313	10.0927	6.9888	4.50624	6.02942	5.41917	8.97153	11.1927	11.6221	11.1351	5.56037	8.90221	12.0663	12.3513	17.4931	17.6469	3.97153	5.52617	17.7397	11.4391	16.1853	18.6489
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
[Close]
BLAST of TCONS_00064155 vs. Swiss-Prot (Human)
Match: RAB1B (Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 2.161e-57
Identity = 88/189 (46.56%), Postives = 133/189 (70.37%), Query Frame = -1 
Query: 1047 DFVFKIIIVGEAGVGKSCLLRRFVDQNFTENYVNTIGVDFKVRTVEMMGKTIKLNIWDSAGQERFRTIVNTYYRGARGICLVYDITDPDSFIRLGNWLTDAGEQADERAKKMIIGTKTDLESHRKVSREDVQVFADRMNLTVVETSSKNGSNVEAAFLSLTRQLLEDVQVFA----DRMNLTVVETSSK 1601
            D++FK++++G++GVGKSCLL RF D  +TE+Y++TIGVDFK+RT+E+ GKTIKL IWD+AGQERFRTI ++YYRGA GI +VYD+TD +S+  +  WL +    A E   K+++G K+DL + + V     + FAD + +  +ETS+KN +NVE AF+++  ++ + +   A    +R NL +  T  K
Sbjct:    6 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKIDSTPVK 194
The following BLAST results are available for this feature:
BLAST of TCONS_00064155 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB1B2.161e-5746.56Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1... [more]
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