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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064151 ID=TCONS_00064151|Name=TCONS_00064151|organism=Clytia hemisphaerica|type=transcript|length=474bp
AAAACGGAAAGCCAGCAAATGTGCATTTCCACAACACGATCGTACATGTA
AAACTTTACTCAGAGGATCAGGCCAACGTTCGTTATATCCTCGAAGTGGT
TAACAATGAAGTTAGTGACGTCGAAGATCTTGTTCTTGTGGGTCCCGATG
GAATCAAGATACCAGACCAGGAAGGAACCAGAGGGATAACGTTCTGGAAA
GTTGGTTCCCGGAAGGTTTTTGCTGTCGATAGAGAAGAAATGGATCGACA
TAGATCACTCGAGTTCGATTCAAGCCCTGCAGTGACAGTTCGTAAACGCA
GACGTACCAACAATTCAAGCAGCGAAGACAGAGATCCAACAAACAGTTTG
TTATCTGAGCTTTCCGAGGTTAAACGTTTGCTCAAGAGCTACAAATCTCT
TGCATTCAAACACAAGTTCCCCGTTTCCTATCTAAAAGCTCTAGAAGAGG
CGTTCACATGTTGCATATGCCAAC Run BLAST on NCBI protein sequence of TCONS_00064151-protein >TCONS_00064151-protein ID=TCONS_00064151-protein|Name=TCONS_00064151-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
NGKPANVHFHNTIVHVKLYSEDQANVRYILEVVNNEVSDVEDLVLVGPDG
IKIPDQEGTRGITFWKVGSRKVFAVDREEMDRHRSLEFDSSPAVTVRKRR
RTNNSSSEDRDPTNSLLSELSEVKRLLKSYKSLAFKHKFPVSYLKALEEA
FTCCICQ Run BLAST on NCBI transcript from alignment at scaffold_41:5271..6550+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064151 ID=TCONS_00064151|Name=TCONS_00064151|organism=Clytia hemisphaerica|type=transcript|length=1280bp|location=Sequence derived from alignment at scaffold_41:5271..6550+ (Clytia hemisphaerica)
AAAACGGAAAGCCAGCAAATGTGCATTTCCACAACACGATCGTACATGTA
AAACTTTACTCAGAGGATCAGGCCAACGTTCGTTATATCCTCGAAGTGGT
TAACAATGAAGTTAGTGACGTCGAAGATCTTGTTCTTGTGGGTCCCGATG
GAATCAAGATACCAGACCAGGAAGGAACCAGAGGTTAGTAAAAAGCTTTT
CTTTTCTCAGACTCACCTTATTCCATTTTGAAAAGAGCTTAAGTGGAAAA
TGTAGCAATGTAGaggcttttttaataagaatatcctCTACACAAGAATG
TCAAGTTGAAAATTGGCCAAGTCGTAAGAATAACCTAAGAACACATCTAG
GATAGGTTGACAGATTTTTATGAGAACTGATTCGATTGAGTTCTTCGACT
AAAATCGAGACTTTGAGACAGAAATCGCTCTTTAGTTAATACCATTGTGT
ATGTAGACGTcttgaaaaagttttattttaatgtttgtaTTAAGGGCTAG
TCTCGAAAaagtaagaatatgttaaggatactttaatgtcagaaattttT
GCGTCCAGAATGACCCctcaattcgcgaaattaaatggtCGCGGCTAATT
CGCGAAAATTATTCCCATGAGACACGGTCTTCAGATtttcttgattattt
tttgcttattagAACATGCAAAATGTCGCGAAAAAGAATTCCAGCCAAAT
GAATTCttgctgattcgcgaaattgaATTCCATCGAAACGcgcgaaattt
cgcgaataaTGGCCTGATTGGCGAAATTTTCTGGACGCGAGAATTTCTGA
cattaaagtatttttaaagtaattttcTGAAACTTTGGTTTAGTATTTGT
TAAGGGtgcgattttgaaagccaattttttcgccagACATACCGTCAGTT
GTCAAACCCAATATCCCCTGGGATTTTATCGTATCTGCCTAAACTAATTT
TGCGTCAAGTTATAACCTTGCAATTTATACTCTTTTCAGGGATAACGTTC
TGGAAAGTTGGTTCCCGGAAGGTTTTTGCTGTCGATAGAGAAGAAATGGA
TCGACATAGATCACTCGAGTTCGATTCAAGCCCTGCAGTGACAGTTCGTA
AACGCAGACGTACCAACAATTCAAGCAGCGAAGACAGAGATCCAACAAAC
AGTTTGTTATCTGAGCTTTCCGAGGTTAAACGTTTGCTCAAGAGCTACAA
ATCTCTTGCATTCAAACACAAGTTCCCCGTTTCCTATCTAAAAGCTCTAG
AAGAGGCGTTCACATGTTGCATATGCCAAC Coding sequence (CDS) from alignment at scaffold_41:5271..6550+ >TCONS_00064151 ID=TCONS_00064151|Name=TCONS_00064151|organism=Clytia hemisphaerica|type=CDS|length=942bp|location=Sequence derived from alignment at scaffold_41:5271..6550+ (Clytia hemisphaerica)
AACGGAAAGCCAGCAAATGTGCATTTCCACAACACGATCGTACATGTAAA
ACTTTACTCAGAGGATCAGGCCAACGTTCGTTATATCCTCGAAGTGGTTA
ACAATGAAGTTAGTGACGTCGAAGATCTTGTTCTTGTGGGTCCCGATGGA
ATCAAGATACCAGACCAGGAAGGAACCAGAGGGATAACGTTCTGGAAAGT
TGGTTCCCGGAAGGTTTTTGCTGTCGATAGAGAAGAAATGGATCGACATA
GATCACTCGAGTTCGATTCAAGCCCTGCAGTGACAGTTCGTAAACGCAGA
CGTACCAACAATTCAAGCAGCGAAGACAGAGATCCAACAAACAGTTTGTT
ATCTGAGCTTTCCGAGGTTAAACGTTTGCTCAAGAGCTACAAATCTCTTG
CATTCAAACACAAGTTCCCCGTTTCCTATCTAAAAGCTCTAGAAGAGGCG
TTCACATGTTGCATATGCCAAAACGGAAAGCCAGCAAATGTGCATTTCCA
CAACACGATCGTACATGTAAAACTTTACTCAGAGGATCAGGCCAACGTTC
GTTATATCCTCGAAGTGGTTAACAATGAAGTTAGTGACGTCGAAGATCTT
GTTCTTGTGGGTCCCGATGGAATCAAGATACCAGACCAGGAAGGAACCAG
AGGGATAACGTTCTGGAAAGTTGGTTCCCGGAAGGTTTTTGCTGTCGATA
GAGAAGAAATGGATCGACATAGATCACTCGAGTTCGATTCAAGCCCTGCA
GTGACAGTTCGTAAACGCAGACGTACCAACAATTCAAGCAGCGAAGACAG
AGATCCAACAAACAGTTTGTTATCTGAGCTTTCCGAGGTTAAACGTTTGC
TCAAGAGCTACAAATCTCTTGCATTCAAACACAAGTTCCCCGTTTCCTAT
CTAAAAGCTCTAGAAGAGGCGTTCACATGTTGCATATGCCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064151-exon-scaffold_41-1491911889:5271..5453 | TCONS_00064151-exon-scaffold_41-1491911889:5271..5453 | Clytia hemisphaerica | exon |
| TCONS_00064151-exon-scaffold_41-1510915933:5271..5453 | TCONS_00064151-exon-scaffold_41-1510915933:5271..5453 | Clytia hemisphaerica | exon |
| TCONS_00064151-exon-scaffold_41-1575043694:5271..5453 | TCONS_00064151-exon-scaffold_41-1575043694:5271..5453 | Clytia hemisphaerica | exon |
| TCONS_00064151-exon-scaffold_41-1491911889:6260..6550 | TCONS_00064151-exon-scaffold_41-1491911889:6260..6550 | Clytia hemisphaerica | exon |
| TCONS_00064151-exon-scaffold_41-1510915933:6260..6550 | TCONS_00064151-exon-scaffold_41-1510915933:6260..6550 | Clytia hemisphaerica | exon |
| TCONS_00064151-exon-scaffold_41-1575043694:6260..6550 | TCONS_00064151-exon-scaffold_41-1575043694:6260..6550 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_41 | supercontig | scaffold_41:5271..6550 + |
Blast
The following BLAST results are available for this feature:
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