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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064147 ID=TCONS_00064147|Name=TCONS_00064147|organism=Clytia hemisphaerica|type=transcript|length=1040bp
aaatttgaaaaatccttaAACATGCGTTGCTTGAGAATCAACATATTcta
ttgtttctttcttttcgaCAATCCTAGTGATTTCTTAAATCCCTGTTTGA
ACTTTGAATTTCCAAAAGCATAACAGATTGGAttcaaaaaagaattcaaa
CGTCCGATAATGTaacaaaaattccaaagttGATCTGGAAAATCATAGTC
CGTACTAGCCTCGATTATTACTGTCAAATGGTAGGGCATCCAACTAAGTA
TGAAGGCTAACGCTATAAAGAATAAGAGTTTCAGAGTACGTCTTTCAGCC
TTTACTCGATCTTTTTTAGTCACGTGATGCCGATTTTCATCTTTATGATC
TACATCACCTGATGTAACATTGCATATCCCTGATGTCACAGCGCGCGATA
CTGAAAATTGACTTTCAGCCGGTATCTCTATTTGGCTTGGATTAGAATTC
AggtttttcttcatattttccACTCGATTTTTTCGTAACTTCAGTAAACG
CATAGATATGGCAACATATACGGACACCAAAATAATGACAGGGATAATAT
AACTGAAAACAACCACAGTTATAGTCAAAGCCACGTCGTATTGGTAAAAG
ATAATTTTACAGCGATATGGATCAAACTTCACTTTATTAACACGTGGGTA
AATAATAATAGCAGGTGCCCAAATGAAAATTGAAGCTACCCAAGTTAAAC
CAATTAGAGTTTTAGTCAATTTTGGTTTAAAGTTAATCCGGTGGTAGATT
GGAAAACAGATGCATAGGAATCTTTCTACGGCAATTGCAATGACCGATAT
ATTTGATATGGTGAATAATATGTGATCCAGACTCAACCAAGCGCTACATA
CTTTTCCACCAAAAGGCCATTTCCCGTGTACCAAATATCCGGTATAGATA
TTAAGTGGAACAAGAGCGACCAGCAGATCCGCAATGGCCAACGAAACGAT
ATAAAAGTGTTTTGCAACTTGAAGTCGAGTGTTTTGGAAGTATGTTTTGA
TGACGATAGTATTACCAAAGATAATACCGAGTGATAATAT Run BLAST on NCBI protein sequence of TCONS_00064147-protein >TCONS_00064147-protein ID=TCONS_00064147-protein|Name=TCONS_00064147-protein|organism=Clytia hemisphaerica|type=polypeptide|length=330bp
ILSLGIIFGNTIVIKTYFQNTRLQVAKHFYIVSLAIADLLVALVPLNIYT
GYLVHGKWPFGGKVCSAWLSLDHILFTISNISVIAIAVERFLCICFPIYH
RINFKPKLTKTLIGLTWVASIFIWAPAIIIYPRVNKVKFDPYRCKIIFYQ
YDVALTITVVVFSYIIPVIILVSVYVAISMRLLKLRKNRVENMKKNLNSN
PSQIEIPAESQFSVSRAVTSGICNVTSGDVDHKDENRHHVTKKDRVKAER
RTLKLLFFIALAFILSWMPYHLTVIIEASTDYDFPDQLWNFCYIIGRLNS
FLNPICYAFGNSKFKQGFKKSLGLSKRKKQ Run BLAST on NCBI transcript from alignment at scaffold_409:101325..102364 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064147 ID=TCONS_00064147|Name=TCONS_00064147|organism=Clytia hemisphaerica|type=transcript|length=1040bp|location=Sequence derived from alignment at scaffold_409:101325..102364 (Clytia hemisphaerica)
ATATTATCACTCGGTATTATCTTTGGTAATACTATCGTCATCAAAACATA
CTTCCAAAACACTCGACTTCAAGTTGCAAAACACTTTTATATCGTTTCGT
TGGCCATTGCGGATCTGCTGGTCGCTCTTGTTCCACTTAATATCTATACC
GGATATTTGGTACACGGGAAATGGCCTTTTGGTGGAAAAGTATGTAGCGC
TTGGTTGAGTCTGGATCACATATTATTCACCATATCAAATATATCGGTCA
TTGCAATTGCCGTAGAAAGATTCCTATGCATCTGTTTTCCAATCTACCAC
CGGATTAACTTTAAACCAAAATTGACTAAAACTCTAATTGGTTTAACTTG
GGTAGCTTCAATTTTCATTTGGGCACCTGCTATTATTATTTACCCACGTG
TTAATAAAGTGAAGTTTGATCCATATCGCTGTAAAATTATCTTTTACCAA
TACGACGTGGCTTTGACTATAACTGTGGTTGTTTTCAGTTATATTATCCC
TGTCATTATTTTGGTGTCCGTATATGTTGCCATATCTATGCGTTTACTGA
AGTTACGAAAAAATCGAGTggaaaatatgaagaaaaaccTGAATTCTAAT
CCAAGCCAAATAGAGATACCGGCTGAAAGTCAATTTTCAGTATCGCGCGC
TGTGACATCAGGGATATGCAATGTTACATCAGGTGATGTAGATCATAAAG
ATGAAAATCGGCATCACGTGACTAAAAAAGATCGAGTAAAGGCTGAAAGA
CGTACTCTGAAACTCTTATTCTTTATAGCGTTAGCCTTCATACTTAGTTG
GATGCCCTACCATTTGACAGTAATAATCGAGGCTAGTACGGACTATGATT
TTCCAGATCaactttggaatttttgttACATTATCGGACGtttgaattct
tttttgaaTCCAATCTGTTATGCTTTTGGAAATTCAAAGTTCAAACAGGG
ATTTAAGAAATCACTAGGATTGtcgaaaagaaagaaacaatagAATATGT
TGATTCTCAAGCAACGCATGTTtaaggatttttcaaattt Coding sequence (CDS) from alignment at scaffold_409:101325..102364 >TCONS_00064147 ID=TCONS_00064147|Name=TCONS_00064147|organism=Clytia hemisphaerica|type=CDS|length=993bp|location=Sequence derived from alignment at scaffold_409:101325..102364 (Clytia hemisphaerica)
ATATTATCACTCGGTATTATCTTTGGTAATACTATCGTCATCAAAACATA
CTTCCAAAACACTCGACTTCAAGTTGCAAAACACTTTTATATCGTTTCGT
TGGCCATTGCGGATCTGCTGGTCGCTCTTGTTCCACTTAATATCTATACC
GGATATTTGGTACACGGGAAATGGCCTTTTGGTGGAAAAGTATGTAGCGC
TTGGTTGAGTCTGGATCACATATTATTCACCATATCAAATATATCGGTCA
TTGCAATTGCCGTAGAAAGATTCCTATGCATCTGTTTTCCAATCTACCAC
CGGATTAACTTTAAACCAAAATTGACTAAAACTCTAATTGGTTTAACTTG
GGTAGCTTCAATTTTCATTTGGGCACCTGCTATTATTATTTACCCACGTG
TTAATAAAGTGAAGTTTGATCCATATCGCTGTAAAATTATCTTTTACCAA
TACGACGTGGCTTTGACTATAACTGTGGTTGTTTTCAGTTATATTATCCC
TGTCATTATTTTGGTGTCCGTATATGTTGCCATATCTATGCGTTTACTGA
AGTTACGAAAAAATCGAGTggaaaatatgaagaaaaaccTGAATTCTAAT
CCAAGCCAAATAGAGATACCGGCTGAAAGTCAATTTTCAGTATCGCGCGC
TGTGACATCAGGGATATGCAATGTTACATCAGGTGATGTAGATCATAAAG
ATGAAAATCGGCATCACGTGACTAAAAAAGATCGAGTAAAGGCTGAAAGA
CGTACTCTGAAACTCTTATTCTTTATAGCGTTAGCCTTCATACTTAGTTG
GATGCCCTACCATTTGACAGTAATAATCGAGGCTAGTACGGACTATGATT
TTCCAGATCaactttggaatttttgttACATTATCGGACGtttgaattct
tttttgaaTCCAATCTGTTATGCTTTTGGAAATTCAAAGTTCAAACAGGG
ATTTAAGAAATCACTAGGATTGtcgaaaagaaagaaacaatag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064147-exon-scaffold_409-1491911889:101325..102364 | TCONS_00064147-exon-scaffold_409-1491911889:101325..102364 | Clytia hemisphaerica | exon |
| TCONS_00064147-exon-scaffold_409-1510915933:101325..102364 | TCONS_00064147-exon-scaffold_409-1510915933:101325..102364 | Clytia hemisphaerica | exon |
| TCONS_00064147-exon-scaffold_409-1575043694:101325..102364 | TCONS_00064147-exon-scaffold_409-1575043694:101325..102364 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_409 | supercontig | scaffold_409:101325..102364 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
BLAST of TCONS_00064147 vs. Swiss-Prot (Human)
Match: ACM2 (Muscarinic acetylcholine receptor M2 OS=Homo sapiens GN=CHRM2 PE=1 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 5.075e-29 Identity = 74/245 (30.20%), Postives = 126/245 (51.43%), Query Frame = -1
Query: 306 LSLGIIFGNTIVIKTYFQNTRLQVAKHFYIVSLAIADLLVALVPLNIYTGYLVHGKWPFGGKVCSAWLSLDHILFTISNISVIAIAVERFLCICFPIYHRINFKPKLTKTLIGLTWVASIFIWAPAIIIYPRVNKVK-FDPYRCKIIFYQYDVALTITVVVFSYIIPVIILVSVYVAISMRLLKLRKNRVENMKKNLNSNPSQIEIPAESQFSVSRAVTSGICNVTSGDVDHKDENRHHVTKKDR 1037
LSL I GN +V+ + N LQ ++++ SLA ADL++ + +N+YT Y V G WP G VC WL+LD+++ S ++++ I+ +R+ C+ P+ + + K+ +I WV S +WAPAI+ + + V+ + C I F+ + A+T + ++ +PVII+ +Y IS + K+R++ KK P + P R V N+ S D D + N+ K R
Sbjct: 33 LSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWAPAILFWQFIVGVRTVEDGECYIQFFS-NAAVTFGTAIAAFYLPVIIMTVLYWHIS----RASKSRIKKDKK----EPVANQDPVSPSLVQGRIVKPNNNNMPSSD-DGLEHNKIQNGKAPR 267
The following BLAST results are available for this feature:
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