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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064141 ID=TCONS_00064141|Name=TCONS_00064141|organism=Clytia hemisphaerica|type=transcript|length=2723bp
TGAAAATGTAATATAAAGACCTAGAATAAGGCTCTGTTGCCGTCGGAATT
TTACCTAGAAGGACCACTGTTTCGGGCCCGTATTAGAAGGAACATGGTCT
CGTTTTTACACAAACAAGATTTATTACAAAATGGCGGCCACAGAGGCGCT
CAAAGATGGCGCAACAGAAAAATCATATCAACAAGACAAGGCTGATGAAT
TCCTGGCCTCTCTTGTATCAGACATAACACAAAACATCGATGAACCATCA
ACACCATTCTTCATGAATCTCGGCAAAGTATACGACCTTCCCAGAGACTC
TGTTATCAAAAGTTTACAACAACTGAAGAATCCAACATCAGTGACTCTAT
TCAGAGAGCAAATGTTTTATCTCTTTCTTGCACACTACACTGAAAATGAG
AAAGTACTCTCGGATAACGGTTTCAACTGCACAAAAGACAATGCAAAAAC
TCACCTTAAAACAAGAAGGAGTACTGTTAACGCGTTAGAAGACATTTATG
AACTTGGTAAGTCTATCCACGAGAACCGGATTGCGTCAGGACTTGCCTCG
AAGATTCTTAAAGATAAAGTTGCCAATAACCCCAAGACTGTGGAACCAGA
CATTCAGCCCATTCCAGAGGATGCCACGATCCTCCAAAAGCTGCAGGCTA
TCATCGCCTTCAATGCTAAACTCGTCACTCAAAACAAAGAACTGAAACTT
CAAATGTCAGAACTTGAGAAAGACAATACCTTCCTCAGAGAGCATCTCAT
CTCTGTTGAAGCCAAACTCGATACATTGATCTCAAGCAACACACTCAAGC
AGCAACATACCATTGCAGAAGATCCTATTGTTCCTATTGCTCAACAACAA
CCACCTGGTGAACAACACGACAACGACAAACGACATGACGACCAACCAGC
CCAGAACGCTCGTAGTGACAACAAATCTCACCACAAACAAACGAATGAGA
ATCACAAGAAGcaattacaaaataaaaatgtagtgTACGGTGGTAAATCA
CACATCGGGAAAAATGTGTCAGGAGTGACCAGGCCATACTCACTTTTCGT
CGGTGGCTTTGACCTTCGGCTTTCACCTGAGGAGACCAAGAACATTATTA
CGAACGATATGGACATAAAGGTCCTCGACATCCATCTCAACCGAAAGAAT
GGTTATAACCAATCGTTTCGAGTCAATATAGACATTCTGGATAAGAGCAA
GGCTTTCGAACCTGATCGCTGGTACAAGGGCCTTGTTGTAAAACCTTTTC
GCCAACCCAGAGAACCCAAAGCCAACCAACCATCCTATGAAACACCAAAC
CGATATAACGTTTTAGATGACCAGCACCCCAACAGATACCACAACCAACA
CCAGTACCGTCAAAACAACCGAACCCACAGAGACTCATCCTATGATCAAG
ATTATAACAGAAATGACTTTAATGACAGAAATGATTGGGGTTGGAAGTGA
ACATAATCTCAACATTGTCGCCCTCAATTGTAATGGCTACAAAACAAACT
ACCTCTATATCAACAATAAACTCAGTAAATTCTATGACATCATACATTTA
TCAGAAACTTGGCTTACCAACAGTGAATCACACCTAATAATCAATTCTTA
CAAAACAGACTTTCATATTATTAACCAACCCGCCTCTCGTCACCAATTTG
GTCATCCGTTTGGAGGAACGTGTTTACTACTACGGAAAACGATATTTGAG
AATTTCAGCACAATCATTCAGGAGGACTATGCCACAATAGTCAAAGTTAT
CTACAAAAACAATGTATTGCTAATTGGAGGGGTATATCTACAATCTTTGA
ACTCACAGTCAAGCCAGTCTCAATGCATAGATACATACAACTCTCAGTTA
GCCTCAATAACAGGCATCATCAGACAATTCAGTGATACTGCTGACCCTCT
ACTCTTTGGAGATTTTCAATGCTGTCCTGATCAACCGACTACCTCACGAA
CAGCCCAATCCAATGCACTCTCCAGCCACCTATCAACATTCATATTCGAT
AACAATCTCCTACCGGTTGACATAACCCATGGTGTAGGACCCACCTACAC
CTATCACCATCTTTCTCTACCGAACAGCTCGTACATTGACCATATCCTGG
TGCCACAATCACTATCTTCAACCGTACTACATACATCTGTTCTATTACCT
GATGCAACTAACACTGGAGACCATCTACCAGTCGGTCGATGCCACAATAA
ATATAAAGACTGATACAGAGTCAATGATACATGAACTTCACAATATCATG
CGTACCTCTGCTAGAGACTGTTATACTTCTGAAAACCGAACTCAGTACAA
TTTCACCCCAAAATCATGGTGGAACGAGGAACTACAGAACGCTCACAAGA
ATCTGAAGTGTATGTTCAACATCTGGAGAGAGAACGGTTTTCCAAAATCA
AACTTAGATGTGAGTTACAATAGATATTTATTTGCTCGCAAAATCTTTCG
CAAACTGGTTAAACGTTCCAAACATCAAGAGACAATCAATCACTACATCA
AAGTCGATAAACTAAAGAAAATCAAACCCTCCTCGTACTGGAAACAGATC
AACTTCCTAAAAAAAGGACCTCGCAAGCTGTACACGATTAACAACAAGAC
TAATGAATCAGACATTACAACAGACTTCCATGACCATTTCGACACTCTCT
TGAACACCCCAAGGGTTACAGGTATCGATAACTCAGAGACTAACATCAAA
TTAAAAGAACTCCTCACGTCACT Run BLAST on NCBI protein sequence of TCONS_00064141-protein >TCONS_00064141-protein ID=TCONS_00064141-protein|Name=TCONS_00064141-protein|organism=Clytia hemisphaerica|type=polypeptide|length=439bp
MAATEALKDGATEKSYQQDKADEFLASLVSDITQNIDEPSTPFFMNLGKV
YDLPRDSVIKSLQQLKNPTSVTLFREQMFYLFLAHYTENEKVLSDNGFNC
TKDNAKTHLKTRRSTVNALEDIYELGKSIHENRIASGLASKILKDKVANN
PKTVEPDIQPIPEDATILQKLQAIIAFNAKLVTQNKELKLQMSELEKDNT
FLREHLISVEAKLDTLISSNTLKQQHTIAEDPIVPIAQQQPPGEQHDNDK
RHDDQPAQNARSDNKSHHKQTNENHKKQLQNKNVVYGGKSHIGKNVSGVT
RPYSLFVGGFDLRLSPEETKNIITNDMDIKVLDIHLNRKNGYNQSFRVNI
DILDKSKAFEPDRWYKGLVVKPFRQPREPKANQPSYETPNRYNVLDDQHP
NRYHNQHQYRQNNRTHRDSSYDQDYNRNDFNDRNDWGWK Run BLAST on NCBI transcript from alignment at scaffold_409:3657..6379 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064141 ID=TCONS_00064141|Name=TCONS_00064141|organism=Clytia hemisphaerica|type=transcript|length=2723bp|location=Sequence derived from alignment at scaffold_409:3657..6379 (Clytia hemisphaerica)
AGTGACGTGAGGAGTTCTTTTAATTTGATGTTAGTCTCTGAGTTATCGAT
ACCTGTAACCCTTGGGGTGTTCAAGAGAGTGTCGAAATGGTCATGGAAGT
CTGTTGTAATGTCTGATTCATTAGTCTTGTTGTTAATCGTGTACAGCTTG
CGAGGTCCTTTTTTTAGGAAGTTGATCTGTTTCCAGTACGAGGAGGGTTT
GATTTTCTTTAGTTTATCGACTTTGATGTAGTGATTGATTGTCTCTTGAT
GTTTGGAACGTTTAACCAGTTTGCGAAAGATTTTGCGAGCAAATAAATAT
CTATTGTAACTCACATCTAAGTTTGATTTTGGAAAACCGTTCTCTCTCCA
GATGTTGAACATACACTTCAGATTCTTGTGAGCGTTCTGTAGTTCCTCGT
TCCACCATGATTTTGGGGTGAAATTGTACTGAGTTCGGTTTTCAGAAGTA
TAACAGTCTCTAGCAGAGGTACGCATGATATTGTGAAGTTCATGTATCAT
TGACTCTGTATCAGTCTTTATATTTATTGTGGCATCGACCGACTGGTAGA
TGGTCTCCAGTGTTAGTTGCATCAGGTAATAGAACAGATGTATGTAGTAC
GGTTGAAGATAGTGATTGTGGCACCAGGATATGGTCAATGTACGAGCTGT
TCGGTAGAGAAAGATGGTGATAGGTGTAGGTGGGTCCTACACCATGGGTT
ATGTCAACCGGTAGGAGATTGTTATCGAATATGAATGTTGATAGGTGGCT
GGAGAGTGCATTGGATTGGGCTGTTCGTGAGGTAGTCGGTTGATCAGGAC
AGCATTGAAAATCTCCAAAGAGTAGAGGGTCAGCAGTATCACTGAATTGT
CTGATGATGCCTGTTATTGAGGCTAACTGAGAGTTGTATGTATCTATGCA
TTGAGACTGGCTTGACTGTGAGTTCAAAGATTGTAGATATACCCCTCCAA
TTAGCAATACATTGTTTTTGTAGATAACTTTGACTATTGTGGCATAGTCC
TCCTGAATGATTGTGCTGAAATTCTCAAATATCGTTTTCCGTAGTAGTAA
ACACGTTCCTCCAAACGGATGACCAAATTGGTGACGAGAGGCGGGTTGGT
TAATAATATGAAAGTCTGTTTTGTAAGAATTGATTATTAGGTGTGATTCA
CTGTTGGTAAGCCAAGTTTCTGATAAATGTATGATGTCATAGAATTTACT
GAGTTTATTGTTGATATAGAGGTAGTTTGTTTTGTAGCCATTACAATTGA
GGGCGACAATGTTGAGATTATGTTCACTTCCAACCCCAATCATTTCTGTC
ATTAAAGTCATTTCTGTTATAATCTTGATCATAGGATGAGTCTCTGTGGG
TTCGGTTGTTTTGACGGTACTGGTGTTGGTTGTGGTATCTGTTGGGGTGC
TGGTCATCTAAAACGTTATATCGGTTTGGTGTTTCATAGGATGGTTGGTT
GGCTTTGGGTTCTCTGGGTTGGCGAAAAGGTTTTACAACAAGGCCCTTGT
ACCAGCGATCAGGTTCGAAAGCCTTGCTCTTATCCAGAATGTCTATATTG
ACTCGAAACGATTGGTTATAACCATTCTTTCGGTTGAGATGGATGTCGAG
GACCTTTATGTCCATATCGTTCGTAATAATGTTCTTGGTCTCCTCAGGTG
AAAGCCGAAGGTCAAAGCCACCGACGAAAAGTGAGTATGGCCTGGTCACT
CCTGACACATTTTTCCCGATGTGTGATTTACCACCGTAcactacattttt
attttgtaattgCTTCTTGTGATTCTCATTCGTTTGTTTGTGGTGAGATT
TGTTGTCACTACGAGCGTTCTGGGCTGGTTGGTCGTCATGTCGTTTGTCG
TTGTCGTGTTGTTCACCAGGTGGTTGTTGTTGAGCAATAGGAACAATAGG
ATCTTCTGCAATGGTATGTTGCTGCTTGAGTGTGTTGCTTGAGATCAATG
TATCGAGTTTGGCTTCAACAGAGATGAGATGCTCTCTGAGGAAGGTATTG
TCTTTCTCAAGTTCTGACATTTGAAGTTTCAGTTCTTTGTTTTGAGTGAC
GAGTTTAGCATTGAAGGCGATGATAGCCTGCAGCTTTTGGAGGATCGTGG
CATCCTCTGGAATGGGCTGAATGTCTGGTTCCACAGTCTTGGGGTTATTG
GCAACTTTATCTTTAAGAATCTTCGAGGCAAGTCCTGACGCAATCCGGTT
CTCGTGGATAGACTTACCAAGTTCATAAATGTCTTCTAACGCGTTAACAG
TACTCCTTCTTGTTTTAAGGTGAGTTTTTGCATTGTCTTTTGTGCAGTTG
AAACCGTTATCCGAGAGTACTTTCTCATTTTCAGTGTAGTGTGCAAGAAA
GAGATAAAACATTTGCTCTCTGAATAGAGTCACTGATGTTGGATTCTTCA
GTTGTTGTAAACTTTTGATAACAGAGTCTCTGGGAAGGTCGTATACTTTG
CCGAGATTCATGAAGAATGGTGTTGATGGTTCATCGATGTTTTGTGTTAT
GTCTGATACAAGAGAGGCCAGGAATTCATCAGCCTTGTCTTGTTGATATG
ATTTTTCTGTTGCGCCATCTTTGAGCGCCTCTGTGGCCGCCATTTTGTAA
TAAATCTTGTTTGTGTAAAAACGAGACCATGTTCCTTCTAATACGGGCCC
GAAACAGTGGTCCTTCTAGGTAAAATTCCGACGGCAACAGAGCCTTATTC
TAGGTCTTTATATTACATTTTCA Coding sequence (CDS) from alignment at scaffold_409:3657..6379 >TCONS_00064141 ID=TCONS_00064141|Name=TCONS_00064141|organism=Clytia hemisphaerica|type=CDS|length=1320bp|location=Sequence derived from alignment at scaffold_409:3657..6379 (Clytia hemisphaerica)
TCACTTCCAACCCCAATCATTTCTGTCATTAAAGTCATTTCTGTTATAAT
CTTGATCATAGGATGAGTCTCTGTGGGTTCGGTTGTTTTGACGGTACTGG
TGTTGGTTGTGGTATCTGTTGGGGTGCTGGTCATCTAAAACGTTATATCG
GTTTGGTGTTTCATAGGATGGTTGGTTGGCTTTGGGTTCTCTGGGTTGGC
GAAAAGGTTTTACAACAAGGCCCTTGTACCAGCGATCAGGTTCGAAAGCC
TTGCTCTTATCCAGAATGTCTATATTGACTCGAAACGATTGGTTATAACC
ATTCTTTCGGTTGAGATGGATGTCGAGGACCTTTATGTCCATATCGTTCG
TAATAATGTTCTTGGTCTCCTCAGGTGAAAGCCGAAGGTCAAAGCCACCG
ACGAAAAGTGAGTATGGCCTGGTCACTCCTGACACATTTTTCCCGATGTG
TGATTTACCACCGTAcactacatttttattttgtaattgCTTCTTGTGAT
TCTCATTCGTTTGTTTGTGGTGAGATTTGTTGTCACTACGAGCGTTCTGG
GCTGGTTGGTCGTCATGTCGTTTGTCGTTGTCGTGTTGTTCACCAGGTGG
TTGTTGTTGAGCAATAGGAACAATAGGATCTTCTGCAATGGTATGTTGCT
GCTTGAGTGTGTTGCTTGAGATCAATGTATCGAGTTTGGCTTCAACAGAG
ATGAGATGCTCTCTGAGGAAGGTATTGTCTTTCTCAAGTTCTGACATTTG
AAGTTTCAGTTCTTTGTTTTGAGTGACGAGTTTAGCATTGAAGGCGATGA
TAGCCTGCAGCTTTTGGAGGATCGTGGCATCCTCTGGAATGGGCTGAATG
TCTGGTTCCACAGTCTTGGGGTTATTGGCAACTTTATCTTTAAGAATCTT
CGAGGCAAGTCCTGACGCAATCCGGTTCTCGTGGATAGACTTACCAAGTT
CATAAATGTCTTCTAACGCGTTAACAGTACTCCTTCTTGTTTTAAGGTGA
GTTTTTGCATTGTCTTTTGTGCAGTTGAAACCGTTATCCGAGAGTACTTT
CTCATTTTCAGTGTAGTGTGCAAGAAAGAGATAAAACATTTGCTCTCTGA
ATAGAGTCACTGATGTTGGATTCTTCAGTTGTTGTAAACTTTTGATAACA
GAGTCTCTGGGAAGGTCGTATACTTTGCCGAGATTCATGAAGAATGGTGT
TGATGGTTCATCGATGTTTTGTGTTATGTCTGATACAAGAGAGGCCAGGA
ATTCATCAGCCTTGTCTTGTTGATATGATTTTTCTGTTGCGCCATCTTTG
AGCGCCTCTGTGGCCGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064141-exon-scaffold_409-1491911889:3657..6379 | TCONS_00064141-exon-scaffold_409-1491911889:3657..6379 | Clytia hemisphaerica | exon |
| TCONS_00064141-exon-scaffold_409-1510915933:3657..6379 | TCONS_00064141-exon-scaffold_409-1510915933:3657..6379 | Clytia hemisphaerica | exon |
| TCONS_00064141-exon-scaffold_409-1575043694:3657..6379 | TCONS_00064141-exon-scaffold_409-1575043694:3657..6379 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_409 | supercontig | scaffold_409:3657..6379 . |
Blast
The following BLAST results are available for this feature:
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