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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064106 ID=TCONS_00064106|Name=TCONS_00064106|organism=Clytia hemisphaerica|type=transcript|length=1183bp
TTTCAGCTTGATGCACCTATCTTTATCACCTGGTATCAGTGTGTATTTTC
CCTCCTTATTCTATTCTTATTGAGTTTTCTTGGCGATAAATATCCATCTA
TCGATAAGTTCCCAGAATTTCAACTGAACCCAGAAATATGCAAACAAATC
ATGCCACTCTCGATTGTTTTTGTTGGGATGATAACTGCAAATAATTTGTG
TTTGAAATATCTCGACGTTGCATTCTATAATGTTGCAAGAGCACTGACAA
CATTCTTTAACATAGTTTTCTCCTACTTTATTCTTGGTCAAAAGACATCA
GTTCGTGCAATCGCTTGCTGCAGTTTAATCATCTTGGGGTTCTCTCTTGG
AGTAAAAGAAGAAGGCCAGCTAGTTGATCTATCATACAAAGGTgtctttt
ttggagttttgggTTCTTTCTTTGTCTGCATNATTATCATACAAAGGagt
attttttggagttttggGTTCTTTCTTTGTCTGCATGAATGCCATCTTCA
CCAAACGTTGCATGCCAGCTGTTGATGGCAATATTTGGCGTTTGCAAATG
TACAACAACTTCAAtgctgtgtttttttttgttccttTGATTATCATCAA
TGGAGATCTATCAGTGGTAGCAGCCTTCCCACATCTATATAATCCAAGAT
TTTGGCTCATGATGTCCCTTAGTGGAGTCTTTGGTATTGCAATTGGTTAT
GTTACCGGCTTACAAATCAAGGTCACCTCACCACTCACCCACAATATAAG
TGGCACAGCTAAAGCATGTGCTCAAACCATCATTGCTGTTGTGTATTTTG
TAACATTCAAATCAAGTCTATGGTGGTTCTGTAATTTCCTTGTCCTTGGT
GGTTCTGGTTTATACACCTATGTCAAAGCTGCAGATATGAAAAGATATCA
TGATCAAAATTTGTTGGAAAGCTCCTTGTACATGTTGAAGCCTAGACGAT
AGATTTAATTTTGACGTACTTTGATGATAAGTTTTGTCTGGGCCATACCA
ACCctaaaatcggaaaaattgaaatgaatacTTTCATTAGGGTAGTTGAT
TATTTCGTGATTTTTATTATCCTTGAAATATTAATTTAAATTGTGGAATT
ATTTTATACCTAAGATGTTTTAAACATATTATTATTCTTTGCTACATGTT
TgggtagaaaattaaaaaatacattgaaaaatG Run BLAST on NCBI transcript from alignment at scaffold_408:43995..47531+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064106 ID=TCONS_00064106|Name=TCONS_00064106|organism=Clytia hemisphaerica|type=transcript|length=3537bp|location=Sequence derived from alignment at scaffold_408:43995..47531+ (Clytia hemisphaerica)
TTTCAGCTTGATGCACCTATCTTTATCACCTGGTATCAGTGTGTATTTTC
CCTCCTTATTCTATTCTTATTGAGTTTTCTTGGCGATAAATATCCATCTA
TCGATAAGTTCCCAGAATTTCAACTGAACCCAGAAATATGCAAACAAGTA
AGTAGTCAtcaccacagatctgtaaagcccaaagggctagatccGCTGCC
TTTATTAAAAAGTGAAGTTTTGTAGGATTGcttaccaaagaaatcacgtg
acaacaagcaatttcacttgtttgagagatgcgaaatacatgtttgtttt
ttttataagcaagtgtatgccccctggtcaggctcgtgtatgcttaagtt
ctcaaagcacccaggcatagtttatgcttattatatgcttaagaattatg
cttattatatgcttaagaattatgcttattatatgcttaagaattatgct
tatgattcaccccgagccaagtttttaatgatattttagaaattttgtaa
aaatttgttcagattttgggagcagtggaatgtagctagccgtggaattt
cttattttttacttgacctctaccaaacttttttaaacagataaaaaatg
acaacttgttaaaaaatattataggctgacatatatgctcatgttatgct
taggaattctgcaaatctgagccttcatatgcttataagcgttatgctta
taaaaaaaaaacatgtagcgtGTGCCGCCTATATTTTTGATCTTGCACTC
TGAAAACTTTCACTCTTTTTTgatggagaaagcttaaagttgcttatcta
gcccttctggctttacagatatctgtggtcatcactatcattaaaaatga
tgtttttacttgtattttatcaattttctggaAGTTGTTGAAGATCAGAT
GCAAACTTTACTTCTTGACAGTAGTATATAATACACAAGttcattcaaaa
tttatgttcTGTTGTTAATTTGAATCAAAATTAGaatcaaaaatcaagtt
tttattttaatatacTTTAGGTTTCTTtacttttaaaaagcttttaaatC
TCATTTAAATTATATTCTATTAAATAAATTACAGTCAGAGTATTTTTGgc
taaatctttgtttaatattgttcttataaaaaataattatttcgtTTTAG
ATCATGCCACTCTCGATTGTTTTTGTTGGGATGATAACTGCAAATAATTT
GTGTTTGAAATATCTCGACGTTGCATTCTATAATGTTGCAAGAGCACTGA
CAACATTCTTTAACATAGTAAGTACCTACAACATACTGATTGAATCATTG
acaattttatatgaattttgaaatcccTGATTCCAAATAAACCAGTgctt
cattttcatttaaaaaaaattgttttttcccTTCTAGGTTTTCTCCTACT
TTATTCTTGGTCAAAAGACATCAGTTCGTGCAATCGCTTGCTGCAGTTTA
ATCATCTTGGGGTTCTCTCTTGGAGTAAAAGAAGAAGGCCAGCTAGTTGA
TCTATCATACAAAGGTgtcttttttggagttttgggTTCTTTCTTTGTCT
GCATNATTATCATACAAAGGagtattttttggagttttggGTTCTTTCTT
TGTCTGCATGAATGCCATCTTCACCAAACGTTGCATGCCAGCTGTTGATG
GCAATATTTGGCGTTTGCAAATGTACAACAACTTCAAtgctgtgtttttt
tttgttccttTGATTATCATCAATGGAGATCTATCAGTGGTAGCAGCCTT
CCCACATCTATATAATCCAAGATTTTGGCTCATGATGTCCCTTAGTGGAG
TCTTTGGTATTGCAATTGGTTATGTTACCGGCTTACAAATCAAGGTCACC
TCACCACTCACCCACAATATAAGTGGCACAGCTAAAGCATGTGCTCAAAC
CATCATTGCTGTTGTGTATTTTGTAACATTCAAATCAAGTCTATGGTGGT
TCTGTAATTTCCTTGTCCTTGGTGGTTCTGGTTTATACACCTATGTCAAA
GCTGCAGATATGAAAAGGTTGACTGCATCTATTAGTAATAAAATTTGATA
AGGGAGttcttatttttgtttgtttgatagATTGAAAACATTACTCTGGA
GCGGGGAAATATATAGCTAAacattgttggaaagatattgagTGGCCTGG
TGTaagtttttaagaattttctaaaagtttttaaaatgaagatgaaaaat
gaagattttttctgctgattcaaaACTTAAACTTTGTGATTTCCTGAAAC
TTTGAACCcactgatttcaaatatgtattgaaatattttggacTAACAAT
CCTCCTAGAAAGGTCCAAAATGGGCgaaaaattgcttaaaaatgcTCGAA
ATAGACCTATTGGCTATATTGGATGTCCAATcaatcaaatgtttttcaat
aaTAACTTTTATCATCAAACATTTGAACACTGTACagaaaaacttaaatt
taatttatttgtatcattTATTACTATTAGTGGTTAGATTATCTTaatct
tataaaagaaatagCAATATTTTGCTTTGAGCATTTGTCACATGATACat
ggatattttttatatagGAGGCCCCCCAAGCAGTTTATTTGATTTCTTGA
TATGGACAAATTTCTAGTGTGATGAACGTGATCtggaattttgagctgtg
atgcgtgatttgaactttttcaaagggatacGTGATTATCcaagtttttt
gctgttttatgTGAGTGTGATTGAGGACAAAAAATTACGTGATATGGTGA
TATGAGTTATCAGTGGGGAGCCTCATTTATAGCGATAGTATTATTGGTAT
TAGTAGGTATATAATATtagattttagatatttttgtcATAATTATGTAA
TTTTAagttaaagccaattttataGCTTACGCATTAGGTGCACTGTCATT
CTGGTATTACCAGATTTTACCCCAGCTTATTTCTGTTGTCTTTTGCTTAT
TTTTTATATAACGTCTCCCATgtaaaaacatcttttgaaaatattttatc
tcaCTACAGCAGACTGATAATGCTTGTATTGCTTTTCTTGTCTCTCCATC
AATTCTTCTATAAGTTTATGACGATTACACCAGCTGGAAAAAGCTTTAAG
TTTTTTGGTGATATGCTTTCAGGTTCATGATTTCAACCTTCTttataaag
atattttttgGTAGATTAATAGGATAATCAGTATTTTTATTAAGAAAACA
GTATTATTTTAATAGTCTaatatttatttctattttcttaGTTTCCAGAT
ATCATGATCAAAATTTGTTGGAAAGCTCCTTGTACATGTTGAAGCCTAGA
CGATAGATTTAATTTTGACGTACTTTGATGATAAGTTTTGTCTGGGCCAT
ACCAACCctaaaatcggaaaaattgaaatgaatacTTTCATTAGGGTAGT
TGATTATTTCGTGATTTTTATTATCCTTGAAATATTAATTTAAATTGTGG
AATTATTTTATACCTAAGATGTTTTAAACATATTATTATTCTTTGCTACA
TGTTTgggtagaaaattaaaaaatacattgaaaaatG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064106-exon-scaffold_408-1491911889:43995..44141 | TCONS_00064106-exon-scaffold_408-1491911889:43995..44141 | Clytia hemisphaerica | exon |
| TCONS_00064106-exon-scaffold_408-1510915933:43995..44141 | TCONS_00064106-exon-scaffold_408-1510915933:43995..44141 | Clytia hemisphaerica | exon |
| TCONS_00064106-exon-scaffold_408-1575043694:43995..44141 | TCONS_00064106-exon-scaffold_408-1575043694:43995..44141 | Clytia hemisphaerica | exon |
| TCONS_00064106-exon-scaffold_408-1491911889:45145..45261 | TCONS_00064106-exon-scaffold_408-1491911889:45145..45261 | Clytia hemisphaerica | exon |
| TCONS_00064106-exon-scaffold_408-1510915933:45145..45261 | TCONS_00064106-exon-scaffold_408-1510915933:45145..45261 | Clytia hemisphaerica | exon |
| TCONS_00064106-exon-scaffold_408-1575043694:45145..45261 | TCONS_00064106-exon-scaffold_408-1575043694:45145..45261 | Clytia hemisphaerica | exon |
| TCONS_00064106-exon-scaffold_408-1491911889:45382..46011 | TCONS_00064106-exon-scaffold_408-1491911889:45382..46011 | Clytia hemisphaerica | exon |
| TCONS_00064106-exon-scaffold_408-1510915933:45382..46011 | TCONS_00064106-exon-scaffold_408-1510915933:45382..46011 | Clytia hemisphaerica | exon |
| TCONS_00064106-exon-scaffold_408-1575043694:45382..46011 | TCONS_00064106-exon-scaffold_408-1575043694:45382..46011 | Clytia hemisphaerica | exon |
| TCONS_00064106-exon-scaffold_408-1491911889:47243..47531 | TCONS_00064106-exon-scaffold_408-1491911889:47243..47531 | Clytia hemisphaerica | exon |
| TCONS_00064106-exon-scaffold_408-1510915933:47243..47531 | TCONS_00064106-exon-scaffold_408-1510915933:47243..47531 | Clytia hemisphaerica | exon |
| TCONS_00064106-exon-scaffold_408-1575043694:47243..47531 | TCONS_00064106-exon-scaffold_408-1575043694:47243..47531 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_408 | supercontig | scaffold_408:43995..47531 + |
Blast
BLAST of TCONS_00064106 vs. Swiss-Prot (Human)
Match: FUCT1 (GDP-fucose transporter 1 OS=Homo sapiens GN=SLC35C1 PE=1 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 5.204e-69 Identity = 80/141 (56.74%), Postives = 106/141 (75.18%), Query Frame = 2
Query: 485 MNAIFTKRCMPAVDGNIWRLQMYNNFNAVFFFVPLIIINGDLSVVAAFPHLYNPRFWLMMSLSGVFGIAIGYVTGLQIKVTSPLTHNISGTAKACAQTIIAVVYFVTFKSSLWWFCNFLVLGGSGLYTYVKAADMKRYHDQ 907
+NAI+T + +PAVDG+IWRL YNN NA F+PL+++ G+L + F L + FW MM+L G+FG AIGYVTGLQIK TSPLTHN+SGTAKACAQT++AV+Y+ KS LWW N +VLGGS YT+V+ +MK+ ++
Sbjct: 211 LNAIYTTKVLPAVDGSIWRLTFYNNVNACILFLPLLLLLGELQALRDFAQLGSAHFWGMMTLGGLFGFAIGYVTGLQIKFTSPLTHNVSGTAKACAQTVLAVLYYEETKSFLWWTSNMMVLGGSSAYTWVRGWEMKKTPEE 351 HSP 2 Score: 123.635 bits (309), Expect = 5.204e-69 Identity = 64/129 (49.61%), Postives = 87/129 (67.44%), Query Frame = 1
Query: 1 FQLDAPIFITWYQCVXXXXXXXXXXXXGDKYPSIDKFPEFQLNPEICKQIMPLSIVFVGMITANNLCLKYLDVAFYNVARALTTFFNIVFSYFILGQKTSVRAIACCSLIILGFSLGVKEEGQLVDLSY 387
+LD PIF+T+YQC+ + L+ LS L P FP +L+ + + ++PLS+VF+GMIT NNLCLKY+ VAFYNV R+LTT FN++ SY +L Q TS A+ C +II GF LGV +EG LS+
Sbjct: 68 LRLDTPIFVTFYQCLVTTLLCKGLSALAACCPGAVDFPSLRLDLRVARSVLPLSVVFIGMITFNNLCLKYVGVAFYNVGRSLTTVFNVLLSYLLLKQTTSFYALLTCGIIIGGFWLGVDQEGAEGTLSW 196
The following BLAST results are available for this feature:
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