TCONS_00064105 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064105
Unique NameTCONS_00064105
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2527

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064105 ID=TCONS_00064105|Name=TCONS_00064105|organism=Clytia hemisphaerica|type=transcript|length=2527bp
acattttattttttagaaaaagatacattttgatatttttagattagaaa
aaaaatgagtgaGAATTCAATTGGACGttcagcaaaaatattttttgttg
tttgtgcTTACTGgTTTGTTTCAATCTCActtgtatttttgaataaattt
ttattgagtGGTAAAGATTTCAAGCTTGATGCACCTATCTTTATCACCTG
GTATCAGTGTGTATTTTCCCTCCTTATTCTATTCTTATTGAGTTTTCTTG
GCGATAAATATCCATCTATCGATAAGTTCCCAGAATTTCAACTGAACCCA
GAAATATGCAAACAAATCATGCCACTCTCGATTGTTTTTGTTGGGATGAT
AACTGCAAATAATTTGTGTTTGAAATATCTCGACGTTGCATTCTATAATG
TTGCAAGAGCACTGACAACATTCTTTAACATAGTTTTCTCCTACTTTATT
CTTGGTCAAAAGACATCAGTTCGTGCAATCGCTTGCTGCAGTTTAATCAT
CTTGGGGTTCTCTCTTGGAGTAAAAGAAGAAGGCCAGCTAGTTGATCTAT
CATACAAAGGagtattttttggagttttggGTTCTTTCTTTGTCTGCATG
AATGCCATCTTCACCAAACGTTGCATGCCAGCTGTTGATGGCAATATTTG
GCGTTTGCAAATGTACAACAACTTCAAtgctgtgtttttttttgttcctt
TGATTATCATCAATGGAGATCTATCAGTGGTAGCAGCCTTCCCACATCTA
TATAATCCAAGATTTTGGCTCATGATGTCCCTTAGTGGAGTCTTTGGTAT
TGCAATTGGTTATGTTACCGGCTTACAAATCAAGGTCACCTCACCACTCA
CCCACAATATAAGTGGCACAGCTAAAGCATGTGCTCAAACCATCATTGCT
GTTGTGTATTTTGTAACATTCAAATCAAGTCTATGGTGGTTCTGTAATTT
CCTTGTCCTTGGTGGTTCTGGTTTATACACCTATGTCAAAGCTGCAGATA
TGAAAAGGTTGACTGCATCTATTAGTAATAAAATTTGATAAGGGAGttct
tatttttgtttgtttgatagATTGAAAACATTACTCTGGAGCGGGGAAAT
ATATAGCTAAacattgttggaaagatattgagTGGCCTGGTGTaagtttt
taagaattttctaaaagtttttaaaatgaagatgaaaaatgaagattttt
tctgctgattcaaaACTTAAACTTTGTGATTTCCTGAAACTTTGAACCca
ctgatttcaaatatgtattgaaatattttggacTAACAATCCTCCTAGAA
AGGTCCAAAATGGGCgaaaaattgcttaaaaatgcTCGAAATAGACCTAT
TGGCTATATTGGATGTCCAATcaatcaaatgtttttcaataaTAACTTTT
ATCATCAAACATTTGAACACTGTACagaaaaacttaaatttaatttattt
gtatcattTATTACTATTAGTGGTTAGATTATCTTaatcttataaaagaa
atagCAATATTTTGCTTTGAGCATTTGTCACATGATACatggatattttt
tatatagGAGGCCCCCCAAGCAGTTTATTTGATTTCTTGATATGGACAAA
TTTCTAGTGTGATGAACGTGATCtggaattttgagctgtgatgcgtgatt
tgaactttttcaaagggatacGTGATTATCcaagttttttgctgttttat
gTGAGTGTGATTGAGGACAAAAAATTACGTGATATGGTGATATGAGTTAT
CAGTGGGGAGCCTCATTTATAGCGATAGTATTATTGGTATTAGTAGGTAT
ATAATATtagattttagatatttttgtcATAATTATGTAATTTTAagtta
aagccaattttataGCTTACGCATTAGGTGCACTGTCATTCTGGTATTAC
CAGATTTTACCCCAGCTTATTTCTGTTGTCTTTTGCTTATTTTTTATATA
ACGTCTCCCATgtaaaaacatcttttgaaaatattttatctcaCTACAGC
AGACTGATAATGCTTGTATTGCTTTTCTTGTCTCTCCATCAATTCTTCTA
TAAGTTTATGACGATTACACCAGCTGGAAAAAGCTTTAAGTTTTTTGGTG
ATATGCTTTCAGGTTCATGATTTCAACCTTCTttataaagatattttttg
GTAGATTAATAGGATAATCAGTATTTTTATTAAGAAAACAGTATTATTTT
AATAGTCTaatatttatttctattttcttaGTTTCCAGATATCATGATCA
AAATTTGTTGGAAAGCTCCTTGTACATGTTGAAGCCTAGACGATAGATTT
AATTTTGACGTACTTTGATGATAAGTTTTGTCTGGGCCATACCAACCcta
aaatcggaaaaattgaaatgaatacTTTCATTAGGGTAGTTGATTATTTC
GTGATTTTTATTATCCTTGAAATATTAATTTAAATTGTGGAATTATTTTA
TACCTAAGATGTTTTAAACATATTATTATTCTTTGCTACATGTTTgggta
gaaaattaaaaaatacattgaaaaatG
Run BLAST on NCBI

protein sequence of TCONS_00064105-protein

>TCONS_00064105-protein ID=TCONS_00064105-protein|Name=TCONS_00064105-protein|organism=Clytia hemisphaerica|type=polypeptide|length=327bp
MSENSIGRSAKIFFVVCAYWFVSISLVFLNKFLLSGKDFKLDAPIFITWY
QCVFSLLILFLLSFLGDKYPSIDKFPEFQLNPEICKQIMPLSIVFVGMIT
ANNLCLKYLDVAFYNVARALTTFFNIVFSYFILGQKTSVRAIACCSLIIL
GFSLGVKEEGQLVDLSYKGVFFGVLGSFFVCMNAIFTKRCMPAVDGNIWR
LQMYNNFNAVFFFVPLIIINGDLSVVAAFPHLYNPRFWLMMSLSGVFGIA
IGYVTGLQIKVTSPLTHNISGTAKACAQTIIAVVYFVTFKSSLWWFCNFL
VLGGSGLYTYVKAADMKRLTASISNKI
Run BLAST on NCBI

transcript from alignment at scaffold_408:42647..47531+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064105 ID=TCONS_00064105|Name=TCONS_00064105|organism=Clytia hemisphaerica|type=transcript|length=4885bp|location=Sequence derived from alignment at scaffold_408:42647..47531+ (Clytia hemisphaerica)
acattttattttttagaaaaagatacattttgatatttttagattagaaa
aaaaatgagtgaGAATTCAATTGGACGttcagcaaaaatattttttgttg
tttgtgcTTACTGGTGAGAGGTTTCCTACTTTTTCTATAAAAGTCTCCAA
TTAAAAATGAACCATGACCTTTTTGATCATTGAGAATTGTATTTTAAATA
GACTGAAAAACCTTTTTCCCAATATatactttatatattttataataCCG
TTTATCAAAAGTATGATACTGCTCTGTCAATTAGTATTGAGCACTCAGAT
TAAATTTAAAGTCATTTGTACAATATATTATTGTCATAAATTGGCATGTT
CAGAAAAATGAAATGAGATGATGTTTCTCTTCCTCCaagttttttaaaca
ttttagtTTGGACTATTATCCTTTTAGAATGAtttgttttttatcaattt
caggTTTGTTTCAATCTCActtgtatttttgaataaatttttattgagtG
GTAAAGATTTCAAGGCAAGTATATACATCATTTTATACATTAAAAAACTT
TCCTTACCTTAATTCTCCCCCTCTTTACTAGGGGAGGGGTAACTTTCCAT
ACATTTGTGTCATCACAAGCAACTTtaaatacaaatgaaatggaaCGTTC
CAGCAAAACGAACAATATGGAACGTTCTTGAACGTTTAGGAACGTTCTAA
GAACGCTAGAGAACGTTCTTGAACGTTCCTGATCGTTCCTGGTCATTCCC
TTTTATTTACTAGTTTAAGGATGTCTTAAAACATTCGGAAGCGTTCCTGA
ACGTTCCATAACGTTCTCGAACGTTCTTATTGAGTCAATATTAACCTTTG
GACTCAAAAGATCGTTCGCGAGTGTTCTGGAACGTTCTGCAACGTTCTCG
AGCGTTCTGGAACGTCTCTGAACGTTCCAAACGTCCCTGAACGTTTTAGA
ACGATCGAGGACGTTCTAGAACGTTCTAGGAACGCTATGGAACGTTCGTG
AACGTTCAGGAACGTCTCAAGAACGCTCTGTTTTATTTGTACTTCAAATA
GCTTGTGATGacacattttggaaaaaagcatagcttttttttttaatttc
attgaGGGGTGGCTGAGGTAAAGAGGGGTGACCAGGGGTGGGGGCAGGGT
TTCTGTAAAGCCAAAACCAGAGATCAACTAAATTAACATGATCTACTGAT
tatgattttattcaaatttattcCATTATAAAACAAGCAATTAGAAAGGT
TTGCCAATGACATTTCAGAACATTTAAATTGAAACGGACTTTACCATCCA
TAGGCCAAATTAACTTTGATACATCAGTGTAGACTGTCCCCCTTTTTCTT
TCAGCTTGATGCACCTATCTTTATCACCTGGTATCAGTGTGTATTTTCCC
TCCTTATTCTATTCTTATTGAGTTTTCTTGGCGATAAATATCCATCTATC
GATAAGTTCCCAGAATTTCAACTGAACCCAGAAATATGCAAACAAGTAAG
TAGTCAtcaccacagatctgtaaagcccaaagggctagatccGCTGCCTT
TATTAAAAAGTGAAGTTTTGTAGGATTGcttaccaaagaaatcacgtgac
aacaagcaatttcacttgtttgagagatgcgaaatacatgtttgtttttt
ttataagcaagtgtatgccccctggtcaggctcgtgtatgcttaagttct
caaagcacccaggcatagtttatgcttattatatgcttaagaattatgct
tattatatgcttaagaattatgcttattatatgcttaagaattatgctta
tgattcaccccgagccaagtttttaatgatattttagaaattttgtaaaa
atttgttcagattttgggagcagtggaatgtagctagccgtggaatttct
tattttttacttgacctctaccaaacttttttaaacagataaaaaatgac
aacttgttaaaaaatattataggctgacatatatgctcatgttatgctta
ggaattctgcaaatctgagccttcatatgcttataagcgttatgcttata
aaaaaaaaacatgtagcgtGTGCCGCCTATATTTTTGATCTTGCACTCTG
AAAACTTTCACTCTTTTTTgatggagaaagcttaaagttgcttatctagc
ccttctggctttacagatatctgtggtcatcactatcattaaaaatgatg
tttttacttgtattttatcaattttctggaAGTTGTTGAAGATCAGATGC
AAACTTTACTTCTTGACAGTAGTATATAATACACAAGttcattcaaaatt
tatgttcTGTTGTTAATTTGAATCAAAATTAGaatcaaaaatcaagtttt
tattttaatatacTTTAGGTTTCTTtacttttaaaaagcttttaaatCTC
ATTTAAATTATATTCTATTAAATAAATTACAGTCAGAGTATTTTTGgcta
aatctttgtttaatattgttcttataaaaaataattatttcgtTTTAGAT
CATGCCACTCTCGATTGTTTTTGTTGGGATGATAACTGCAAATAATTTGT
GTTTGAAATATCTCGACGTTGCATTCTATAATGTTGCAAGAGCACTGACA
ACATTCTTTAACATAGTAAGTACCTACAACATACTGATTGAATCATTGac
aattttatatgaattttgaaatcccTGATTCCAAATAAACCAGTgcttca
ttttcatttaaaaaaaattgttttttcccTTCTAGGTTTTCTCCTACTTT
ATTCTTGGTCAAAAGACATCAGTTCGTGCAATCGCTTGCTGCAGTTTAAT
CATCTTGGGGTTCTCTCTTGGAGTAAAAGAAGAAGGCCAGCTAGTTGATC
TATCATACAAAGGTgtcttttttggagttttgggTTCTTTCTTTGTCTGC
ATNATTATCATACAAAGGagtattttttggagttttggGTTCTTTCTTTG
TCTGCATGAATGCCATCTTCACCAAACGTTGCATGCCAGCTGTTGATGGC
AATATTTGGCGTTTGCAAATGTACAACAACTTCAAtgctgtgtttttttt
tgttccttTGATTATCATCAATGGAGATCTATCAGTGGTAGCAGCCTTCC
CACATCTATATAATCCAAGATTTTGGCTCATGATGTCCCTTAGTGGAGTC
TTTGGTATTGCAATTGGTTATGTTACCGGCTTACAAATCAAGGTCACCTC
ACCACTCACCCACAATATAAGTGGCACAGCTAAAGCATGTGCTCAAACCA
TCATTGCTGTTGTGTATTTTGTAACATTCAAATCAAGTCTATGGTGGTTC
TGTAATTTCCTTGTCCTTGGTGGTTCTGGTTTATACACCTATGTCAAAGC
TGCAGATATGAAAAGGTTGACTGCATCTATTAGTAATAAAATTTGATAAG
GGAGttcttatttttgtttgtttgatagATTGAAAACATTACTCTGGAGC
GGGGAAATATATAGCTAAacattgttggaaagatattgagTGGCCTGGTG
Taagtttttaagaattttctaaaagtttttaaaatgaagatgaaaaatga
agattttttctgctgattcaaaACTTAAACTTTGTGATTTCCTGAAACTT
TGAACCcactgatttcaaatatgtattgaaatattttggacTAACAATCC
TCCTAGAAAGGTCCAAAATGGGCgaaaaattgcttaaaaatgcTCGAAAT
AGACCTATTGGCTATATTGGATGTCCAATcaatcaaatgtttttcaataa
TAACTTTTATCATCAAACATTTGAACACTGTACagaaaaacttaaattta
atttatttgtatcattTATTACTATTAGTGGTTAGATTATCTTaatctta
taaaagaaatagCAATATTTTGCTTTGAGCATTTGTCACATGATACatgg
atattttttatatagGAGGCCCCCCAAGCAGTTTATTTGATTTCTTGATA
TGGACAAATTTCTAGTGTGATGAACGTGATCtggaattttgagctgtgat
gcgtgatttgaactttttcaaagggatacGTGATTATCcaagttttttgc
tgttttatgTGAGTGTGATTGAGGACAAAAAATTACGTGATATGGTGATA
TGAGTTATCAGTGGGGAGCCTCATTTATAGCGATAGTATTATTGGTATTA
GTAGGTATATAATATtagattttagatatttttgtcATAATTATGTAATT
TTAagttaaagccaattttataGCTTACGCATTAGGTGCACTGTCATTCT
GGTATTACCAGATTTTACCCCAGCTTATTTCTGTTGTCTTTTGCTTATTT
TTTATATAACGTCTCCCATgtaaaaacatcttttgaaaatattttatctc
aCTACAGCAGACTGATAATGCTTGTATTGCTTTTCTTGTCTCTCCATCAA
TTCTTCTATAAGTTTATGACGATTACACCAGCTGGAAAAAGCTTTAAGTT
TTTTGGTGATATGCTTTCAGGTTCATGATTTCAACCTTCTttataaagat
attttttgGTAGATTAATAGGATAATCAGTATTTTTATTAAGAAAACAGT
ATTATTTTAATAGTCTaatatttatttctattttcttaGTTTCCAGATAT
CATGATCAAAATTTGTTGGAAAGCTCCTTGTACATGTTGAAGCCTAGACG
ATAGATTTAATTTTGACGTACTTTGATGATAAGTTTTGTCTGGGCCATAC
CAACCctaaaatcggaaaaattgaaatgaatacTTTCATTAGGGTAGTTG
ATTATTTCGTGATTTTTATTATCCTTGAAATATTAATTTAAATTGTGGAA
TTATTTTATACCTAAGATGTTTTAAACATATTATTATTCTTTGCTACATG
TTTgggtagaaaattaaaaaatacattgaaaaatG

Coding sequence (CDS) from alignment at scaffold_408:42647..47531+

>TCONS_00064105 ID=TCONS_00064105|Name=TCONS_00064105|organism=Clytia hemisphaerica|type=CDS|length=5904bp|location=Sequence derived from alignment at scaffold_408:42647..47531+ (Clytia hemisphaerica)
atgagtgaGAATTCAATTGGACGttcagcaaaaatattttttgttgtttg
tgcTTACTGgTTTGTTTCAATCTCActtgtatttttgaataaatttttat
tgagtGGTAAAGATTTCAAGCTTGATGCACCTATCTTTATCACCTGGTAT
CAGTGTGTATTTTCCCTCCTTATTCTATTCTTATTGAGTTTTCTTGGCGA
TAAATATCCATCTATCGATAAGTTCCCAGAATTTCAACTGAACCCAGAAA
TATGCAAACAAATCATGCCACTCTCGATTGTTTTTGTTGGGATGATAACT
GCAAATAATTTGTGTTTGAAATATCTCGACGTTGCATTCTATAATGTTGC
AAGAGCACTGACAACATTCTTTAACATAGTTTTCTCCTACTTTATTCTTG
GTCAAAAGACATCAGTTCGTGCAATCGCTTGCTGCAGTTTAATCATCTTG
GGGTTCTCTCTTGGAGTAAAAGAAGAAGGCCAGCTAGTTGATCTATCATA
CAAAGGagtattttttggagttttggGTTCTTTCTTTGTCTGCATGAATG
CCATCTTCACCAAACGTTGCATGCCAGCTGTTGATGGCAATATTTGGCGT
TTGCAAATGTACAACAACTTCAAtgctgtgtttttttttgttccttTGAT
TATCATCAATGGAGATCTATCAGTGGTAGCAGCCTTCCCACATCTATATA
ATCCAAGATTTTGGCTCATGATGTCCCTTAGTGGAGTCTTTGGTATTGCA
ATTGGTTATGTTACCGGCTTACAAATCAAGGTCACCTCACCACTCACCCA
CAATATAAGTGGCACAGCTAAAGCATGTGCTCAAACCATCATTGCTGTTG
TGTATTTTGTAACATTCAAATCAAGTCTATGGTGGTTCTGTAATTTCCTT
GTCCTTGGTGGTTCTGGTTTATACACCTATGTCAAAGCTGCAGATATGAA
AAGGTTGACTGCATCTATTAGTAATAAAATTTGAatgagtgaGAATTCAA
TTGGACGttcagcaaaaatattttttgttgtttgtgcTTACTGgTTTGTT
TCAATCTCActtgtatttttgaataaatttttattgagtGGTAAAGATTT
CAAGCTTGATGCACCTATCTTTATCACCTGGTATCAGTGTGTATTTTCCC
TCCTTATTCTATTCTTATTGAGTTTTCTTGGCGATAAATATCCATCTATC
GATAAGTTCCCAGAATTTCAACTGAACCCAGAAATATGCAAACAAATCAT
GCCACTCTCGATTGTTTTTGTTGGGATGATAACTGCAAATAATTTGTGTT
TGAAATATCTCGACGTTGCATTCTATAATGTTGCAAGAGCACTGACAACA
TTCTTTAACATAGTTTTCTCCTACTTTATTCTTGGTCAAAAGACATCAGT
TCGTGCAATCGCTTGCTGCAGTTTAATCATCTTGGGGTTCTCTCTTGGAG
TAAAAGAAGAAGGCCAGCTAGTTGATCTATCATACAAAGGagtatttttt
ggagttttggGTTCTTTCTTTGTCTGCATGAATGCCATCTTCACCAAACG
TTGCATGCCAGCTGTTGATGGCAATATTTGGCGTTTGCAAATGTACAACA
ACTTCAAtgctgtgtttttttttgttccttTGATTATCATCAATGGAGAT
CTATCAGTGGTAGCAGCCTTCCCACATCTATATAATCCAAGATTTTGGCT
CATGATGTCCCTTAGTGGAGTCTTTGGTATTGCAATTGGTTATGTTACCG
GCTTACAAATCAAGGTCACCTCACCACTCACCCACAATATAAGTGGCACA
GCTAAAGCATGTGCTCAAACCATCATTGCTGTTGTGTATTTTGTAACATT
CAAATCAAGTCTATGGTGGTTCTGTAATTTCCTTGTCCTTGGTGGTTCTG
GTTTATACACCTATGTCAAAGCTGCAGATATGAAAAGGTTGACTGCATCT
ATTAGTAATAAAATTTGAatgagtgaGAATTCAATTGGACGttcagcaaa
aatattttttgttgtttgtgcTTACTGgTTTGTTTCAATCTCActtgtat
ttttgaataaatttttattgagtGGTAAAGATTTCAAGCTTGATGCACCT
ATCTTTATCACCTGGTATCAGTGTGTATTTTCCCTCCTTATTCTATTCTT
ATTGAGTTTTCTTGGCGATAAATATCCATCTATCGATAAGTTCCCAGAAT
TTCAACTGAACCCAGAAATATGCAAACAAATCATGCCACTCTCGATTGTT
TTTGTTGGGATGATAACTGCAAATAATTTGTGTTTGAAATATCTCGACGT
TGCATTCTATAATGTTGCAAGAGCACTGACAACATTCTTTAACATAGTTT
TCTCCTACTTTATTCTTGGTCAAAAGACATCAGTTCGTGCAATCGCTTGC
TGCAGTTTAATCATCTTGGGGTTCTCTCTTGGAGTAAAAGAAGAAGGCCA
GCTAGTTGATCTATCATACAAAGGagtattttttggagttttggGTTCTT
TCTTTGTCTGCATGAATGCCATCTTCACCAAACGTTGCATGCCAGCTGTT
GATGGCAATATTTGGCGTTTGCAAATGTACAACAACTTCAAtgctgtgtt
tttttttgttccttTGATTATCATCAATGGAGATCTATCAGTGGTAGCAG
CCTTCCCACATCTATATAATCCAAGATTTTGGCTCATGATGTCCCTTAGT
GGAGTCTTTGGTATTGCAATTGGTTATGTTACCGGCTTACAAATCAAGGT
CACCTCACCACTCACCCACAATATAAGTGGCACAGCTAAAGCATGTGCTC
AAACCATCATTGCTGTTGTGTATTTTGTAACATTCAAATCAAGTCTATGG
TGGTTCTGTAATTTCCTTGTCCTTGGTGGTTCTGGTTTATACACCTATGT
CAAAGCTGCAGATATGAAAAGGTTGACTGCATCTATTAGTAATAAAATTT
GAatgagtgaGAATTCAATTGGACGttcagcaaaaatattttttgttgtt
tgtgcTTACTGgTTTGTTTCAATCTCActtgtatttttgaataaattttt
attgagtGGTAAAGATTTCAAGCTTGATGCACCTATCTTTATCACCTGGT
ATCAGTGTGTATTTTCCCTCCTTATTCTATTCTTATTGAGTTTTCTTGGC
GATAAATATCCATCTATCGATAAGTTCCCAGAATTTCAACTGAACCCAGA
AATATGCAAACAAATCATGCCACTCTCGATTGTTTTTGTTGGGATGATAA
CTGCAAATAATTTGTGTTTGAAATATCTCGACGTTGCATTCTATAATGTT
GCAAGAGCACTGACAACATTCTTTAACATAGTTTTCTCCTACTTTATTCT
TGGTCAAAAGACATCAGTTCGTGCAATCGCTTGCTGCAGTTTAATCATCT
TGGGGTTCTCTCTTGGAGTAAAAGAAGAAGGCCAGCTAGTTGATCTATCA
TACAAAGGagtattttttggagttttggGTTCTTTCTTTGTCTGCATGAA
TGCCATCTTCACCAAACGTTGCATGCCAGCTGTTGATGGCAATATTTGGC
GTTTGCAAATGTACAACAACTTCAAtgctgtgtttttttttgttccttTG
ATTATCATCAATGGAGATCTATCAGTGGTAGCAGCCTTCCCACATCTATA
TAATCCAAGATTTTGGCTCATGATGTCCCTTAGTGGAGTCTTTGGTATTG
CAATTGGTTATGTTACCGGCTTACAAATCAAGGTCACCTCACCACTCACC
CACAATATAAGTGGCACAGCTAAAGCATGTGCTCAAACCATCATTGCTGT
TGTGTATTTTGTAACATTCAAATCAAGTCTATGGTGGTTCTGTAATTTCC
TTGTCCTTGGTGGTTCTGGTTTATACACCTATGTCAAAGCTGCAGATATG
AAAAGGTTGACTGCATCTATTAGTAATAAAATTTGAatgagtgaGAATTC
AATTGGACGttcagcaaaaatattttttgttgtttgtgcTTACTGgTTTG
TTTCAATCTCActtgtatttttgaataaatttttattgagtGGTAAAGAT
TTCAAGCTTGATGCACCTATCTTTATCACCTGGTATCAGTGTGTATTTTC
CCTCCTTATTCTATTCTTATTGAGTTTTCTTGGCGATAAATATCCATCTA
TCGATAAGTTCCCAGAATTTCAACTGAACCCAGAAATATGCAAACAAATC
ATGCCACTCTCGATTGTTTTTGTTGGGATGATAACTGCAAATAATTTGTG
TTTGAAATATCTCGACGTTGCATTCTATAATGTTGCAAGAGCACTGACAA
CATTCTTTAACATAGTTTTCTCCTACTTTATTCTTGGTCAAAAGACATCA
GTTCGTGCAATCGCTTGCTGCAGTTTAATCATCTTGGGGTTCTCTCTTGG
AGTAAAAGAAGAAGGCCAGCTAGTTGATCTATCATACAAAGGagtatttt
ttggagttttggGTTCTTTCTTTGTCTGCATGAATGCCATCTTCACCAAA
CGTTGCATGCCAGCTGTTGATGGCAATATTTGGCGTTTGCAAATGTACAA
CAACTTCAAtgctgtgtttttttttgttccttTGATTATCATCAATGGAG
ATCTATCAGTGGTAGCAGCCTTCCCACATCTATATAATCCAAGATTTTGG
CTCATGATGTCCCTTAGTGGAGTCTTTGGTATTGCAATTGGTTATGTTAC
CGGCTTACAAATCAAGGTCACCTCACCACTCACCCACAATATAAGTGGCA
CAGCTAAAGCATGTGCTCAAACCATCATTGCTGTTGTGTATTTTGTAACA
TTCAAATCAAGTCTATGGTGGTTCTGTAATTTCCTTGTCCTTGGTGGTTC
TGGTTTATACACCTATGTCAAAGCTGCAGATATGAAAAGGTTGACTGCAT
CTATTAGTAATAAAATTTGAatgagtgaGAATTCAATTGGACGttcagca
aaaatattttttgttgtttgtgcTTACTGgTTTGTTTCAATCTCActtgt
atttttgaataaatttttattgagtGGTAAAGATTTCAAGCTTGATGCAC
CTATCTTTATCACCTGGTATCAGTGTGTATTTTCCCTCCTTATTCTATTC
TTATTGAGTTTTCTTGGCGATAAATATCCATCTATCGATAAGTTCCCAGA
ATTTCAACTGAACCCAGAAATATGCAAACAAATCATGCCACTCTCGATTG
TTTTTGTTGGGATGATAACTGCAAATAATTTGTGTTTGAAATATCTCGAC
GTTGCATTCTATAATGTTGCAAGAGCACTGACAACATTCTTTAACATAGT
TTTCTCCTACTTTATTCTTGGTCAAAAGACATCAGTTCGTGCAATCGCTT
GCTGCAGTTTAATCATCTTGGGGTTCTCTCTTGGAGTAAAAGAAGAAGGC
CAGCTAGTTGATCTATCATACAAAGGagtattttttggagttttggGTTC
TTTCTTTGTCTGCATGAATGCCATCTTCACCAAACGTTGCATGCCAGCTG
TTGATGGCAATATTTGGCGTTTGCAAATGTACAACAACTTCAAtgctgtg
tttttttttgttccttTGATTATCATCAATGGAGATCTATCAGTGGTAGC
AGCCTTCCCACATCTATATAATCCAAGATTTTGGCTCATGATGTCCCTTA
GTGGAGTCTTTGGTATTGCAATTGGTTATGTTACCGGCTTACAAATCAAG
GTCACCTCACCACTCACCCACAATATAAGTGGCACAGCTAAAGCATGTGC
TCAAACCATCATTGCTGTTGTGTATTTTGTAACATTCAAATCAAGTCTAT
GGTGGTTCTGTAATTTCCTTGTCCTTGGTGGTTCTGGTTTATACACCTAT
GTCAAAGCTGCAGATATGAAAAGGTTGACTGCATCTATTAGTAATAAAAT
TTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040193XLOC_040193Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064105-proteinTCONS_00064105-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064105-exon-scaffold_408-1491911889:42647..42759TCONS_00064105-exon-scaffold_408-1491911889:42647..42759Clytia hemisphaericaexon
TCONS_00064105-exon-scaffold_408-1510915933:42647..42759TCONS_00064105-exon-scaffold_408-1510915933:42647..42759Clytia hemisphaericaexon
TCONS_00064105-exon-scaffold_408-1575043694:42647..42759TCONS_00064105-exon-scaffold_408-1575043694:42647..42759Clytia hemisphaericaexon
TCONS_00064105-exon-scaffold_408-1491911889:43100..43160TCONS_00064105-exon-scaffold_408-1491911889:43100..43160Clytia hemisphaericaexon
TCONS_00064105-exon-scaffold_408-1510915933:43100..43160TCONS_00064105-exon-scaffold_408-1510915933:43100..43160Clytia hemisphaericaexon
TCONS_00064105-exon-scaffold_408-1575043694:43100..43160TCONS_00064105-exon-scaffold_408-1575043694:43100..43160Clytia hemisphaericaexon
TCONS_00064105-exon-scaffold_408-1491911889:44001..44141TCONS_00064105-exon-scaffold_408-1491911889:44001..44141Clytia hemisphaericaexon
TCONS_00064105-exon-scaffold_408-1510915933:44001..44141TCONS_00064105-exon-scaffold_408-1510915933:44001..44141Clytia hemisphaericaexon
TCONS_00064105-exon-scaffold_408-1575043694:44001..44141TCONS_00064105-exon-scaffold_408-1575043694:44001..44141Clytia hemisphaericaexon
TCONS_00064105-exon-scaffold_408-1491911889:45145..45261TCONS_00064105-exon-scaffold_408-1491911889:45145..45261Clytia hemisphaericaexon
TCONS_00064105-exon-scaffold_408-1510915933:45145..45261TCONS_00064105-exon-scaffold_408-1510915933:45145..45261Clytia hemisphaericaexon
TCONS_00064105-exon-scaffold_408-1575043694:45145..45261TCONS_00064105-exon-scaffold_408-1575043694:45145..45261Clytia hemisphaericaexon
TCONS_00064105-exon-scaffold_408-1491911889:45382..45508TCONS_00064105-exon-scaffold_408-1491911889:45382..45508Clytia hemisphaericaexon
TCONS_00064105-exon-scaffold_408-1510915933:45382..45508TCONS_00064105-exon-scaffold_408-1510915933:45382..45508Clytia hemisphaericaexon
TCONS_00064105-exon-scaffold_408-1575043694:45382..45508TCONS_00064105-exon-scaffold_408-1575043694:45382..45508Clytia hemisphaericaexon
TCONS_00064105-exon-scaffold_408-1491911889:45564..47531TCONS_00064105-exon-scaffold_408-1491911889:45564..47531Clytia hemisphaericaexon
TCONS_00064105-exon-scaffold_408-1510915933:45564..47531TCONS_00064105-exon-scaffold_408-1510915933:45564..47531Clytia hemisphaericaexon
TCONS_00064105-exon-scaffold_408-1575043694:45564..47531TCONS_00064105-exon-scaffold_408-1575043694:45564..47531Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_408supercontigscaffold_408:42647..47531 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.32876	3.22207	0.731059	0.512939	14.0472	8.97039	15.0517	15.1198	6.06414	5.85307	2.95871	3.50634	2.31901	1.99613	2.41227	2.42869	5.27038	3.9544	2.03431	4.15449	8.64941	8.83829	11.8364	11.2765	2.4745	3.3745	7.59802	5.8996	9.19943	8.26052
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004853Sugar_P_trans_dom
Blast
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BLAST of TCONS_00064105 vs. Swiss-Prot (Human)
Match: FUCT1 (GDP-fucose transporter 1 OS=Homo sapiens GN=SLC35C1 PE=1 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 1.507e-93
Identity = 169/319 (52.98%), Postives = 220/319 (68.97%), Query Frame = 1 
Query:   76 RSAKIFFVVCAYWFVSISLVFLNKFLLSGKDFKLDAPIFITWYQCVXXXXXXXXXXXXGDKYPSIDKFPEFQLNPEICKQIMPLSIVFVGMITANNLCLKYLDVAFYNVARALTTFFNIVFSYFILGQKTSVRAIACCSLIILGFSLGVKEEGQLVDLSYKXXXXXXXXXXXXCMNAIFTKRCMPAVDGNIWRLQMYNNFNAVFFFVPLIIINGDLSVVAAFPHLYNPRFWLMMSLSGVFGIAIGYVTGLQIKVTSPLTHNISGTAKACAQTIIAVVYFVTFKSSLWWFCNFLVLGGSGLYTYVKAADMKRLTASISNK 1032
            R+ +I  VV  YW  SIS+VFLNK+LL     +LD PIF+T+YQC+ + L+   LS L    P    FP  +L+  + + ++PLS+VF+GMIT NNLCLKY+ VAFYNV R+LTT FN++ SY +L Q TS  A+  C +II GF LGV +EG    LS+ G  FGVL S  V +NAI+T + +PAVDG+IWRL  YNN NA   F+PL+++ G+L  +  F  L +  FW MM+L G+FG AIGYVTGLQIK TSPLTHN+SGTAKACAQT++AV+Y+   KS LWW  N +VLGGS  YT+V+  +MK+     S K
Sbjct:   37 RALQIALVVSLYWVTSISMVFLNKYLLDSPSLRLDTPIFVTFYQCLVTTLLCKGLSALAACCPGAVDFPSLRLDLRVARSVLPLSVVFIGMITFNNLCLKYVGVAFYNVGRSLTTVFNVLLSYLLLKQTTSFYALLTCGIIIGGFWLGVDQEGAEGTLSWLGTVFGVLASLCVSLNAIYTTKVLPAVDGSIWRLTFYNNVNACILFLPLLLLLGELQALRDFAQLGSAHFWGMMTLGGLFGFAIGYVTGLQIKFTSPLTHNVSGTAKACAQTVLAVLYYEETKSFLWWTSNMMVLGGSSAYTWVRGWEMKKTPEEPSPK 355
The following BLAST results are available for this feature:
BLAST of TCONS_00064105 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FUCT11.507e-9352.98GDP-fucose transporter 1 OS=Homo sapiens GN=SLC35C... [more]
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