TCONS_00064101 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064101
Unique NameTCONS_00064101
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length687

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064101 ID=TCONS_00064101|Name=TCONS_00064101|organism=Clytia hemisphaerica|type=transcript|length=687bp
GAGAAAATAAGGGTTTGTGTAAAGTTTTGGACCACAGTCAAAATCTTGTT
ACTACTACTGTTgcgtttctttgttttgttttcgtcttaaacaaaaagaa
acaataaaACCTTACTTAAAGATGTTAAAGATGTTATTGAGAAGAAAATT
TATTCATGCATAAATTAACGAATggaaaaatgaaagagccaatcgaTCGA
GAGTATTTTGTAGTTCACCTCGGCtagacaatcaaaacaaagaagcaGGG
AAAATTTAtgcgaaccgaaaataatttatttagaTTCTACAGATAATTTA
TGCagagtttgaaaaataatttatgcaaatgacgtaatctttcttCGTAT
GGTGGGACTTTTCAAAAAGCAGTTATGTACAAAAAATTACACCACCTATT
TCAAGATGGGGTGTACCGAAAAATCAAGTCTTAAGCGAAAATGACTTTGA
AACTTGACTTGGGATTTACATTTTTGGGAGGTCATCCGAGTTTTCCCAGT
TTAGGTATGGGCCATATAAATAAGTGCAAGAAACAAGAATGggcaagaaa
aatcaaattaaaaaattatcaaaatggaAGGAACAGCGCAAGCTTATTAT
CAAGACCACCAAAAAAATCAAGTCGAAGTCGTGGTGGTgacttcaaatca
aaatgacGGCGAAAAATCGTTGAAGAAAACGTTAAAN
Run BLAST on NCBI

transcript from alignment at scaffold_407:333653..334339

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064101 ID=TCONS_00064101|Name=TCONS_00064101|organism=Clytia hemisphaerica|type=transcript|length=687bp|location=Sequence derived from alignment at scaffold_407:333653..334339 (Clytia hemisphaerica)
NTTTAACGTTTTCTTCAACGATTTTTCGCCgtcattttgatttgaagtcA
CCACCACGACTTCGACTTGATTTTTTTGGTGGTCTTGATAATAAGCTTGC
GCTGTTCCTtccattttgataattttttaatttgatttttcttgccCATT
CTTGTTTCTTGCACTTATTTATATGGCCCATACCTAAACTGGGAAAACTC
GGATGACCTCCCAAAAATGTAAATCCCAAGTCAAGTTTCAAAGTCATTTT
CGCTTAAGACTTGATTTTTCGGTACACCCCATCTTGAAATAGGTGGTGTA
ATTTTTTGTACATAACTGCTTTTTGAAAAGTCCCACCATACGaagaaaga
ttacgtcatttgcataaattatttttcaaactctGCATAAATTATCTGTA
GAAtctaaataaattattttcggttcgcaTAAATTTTCCCtgcttctttg
ttttgattgtctaGCCGAGGTGAACTACAAAATACTCTCGAtcgattggc
tctttcatttttccATTCGTTAATTTATGCATGAATAAATTTTCTTCTCA
ATAACATCTTTAACATCTTTAAGTAAGGTtttattgtttctttttgttta
agacgaaaacaaaacaaagaaacgcAACAGTAGTAGTAACAAGATTTTGA
CTGTGGTCCAAAACTTTACACAAACCCTTATTTTCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040189XLOC_040189Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064101-exon-scaffold_407-1491911889:333653..334339TCONS_00064101-exon-scaffold_407-1491911889:333653..334339Clytia hemisphaericaexon
TCONS_00064101-exon-scaffold_407-1510915933:333653..334339TCONS_00064101-exon-scaffold_407-1510915933:333653..334339Clytia hemisphaericaexon
TCONS_00064101-exon-scaffold_407-1575043694:333653..334339TCONS_00064101-exon-scaffold_407-1575043694:333653..334339Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_407supercontigscaffold_407:333653..334339 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0723774	0.0840371	0	0.400366	0.158187	0.190846	0	0.12509	0.232415	0	0.0988618	0.592346	0.563894	0.210726	0.723653	0	0.171326	1.42018	2.06405	0.0717613	0	0.255302	0.386844	0.239064	0.213359	3.05316	1.30337	0.0823798	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064101 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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