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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064100 ID=TCONS_00064100|Name=TCONS_00064100|organism=Clytia hemisphaerica|type=transcript|length=1026bp
NAGGTGGAGCGACGGAGATACTCTGAGATGGAGCTACAGACAAAGCATCA
TTATTCAGTGGTGACAATCGTCTTCTGAAAGATAGACTGGCAGAAGAAAC
AGCGTAAGATTTTGGCAGAGATGGAGGGTGTGGCACCTTGATTGGAGCAT
CGACAGCAGGAGTACTGTGCTTGGCAACATAATCATTGACATAGCTTTCA
TTTGATGGAATGTCGTAAGGTATGTCTACTAATGGATCTGTTTTGGAGAA
TACTTCTAGCTTCGACTGAGCAATGGCAATTTGGAGTTCATTATCGATCA
ATTCTGCCTCGATTTGAGCTTGCCTCTTTTTCGTGATATACTGTTGCTCT
AACTTTAGCTGTTTGAGTCTGGCTAACTCCATCAGATGAGCGTTCTTGAT
AGCACCTGCCTCAGATTCTAGCTTTCTTGATTCCACTTGTTCTTGTTGAG
TTCTAAGTTCTGTGGAGTTCTGTGGAGTTCTTAGTTCTTGACTACTGGGA
CCAACAGATCCATTCAACGATCTTTCAATCATTCTTCTCTTGATAAGATG
GACTGATTTGTCTAGCTTTTCGACCAAGTCAGAATACTTCGGTTCGTCAT
GTTCTAACAACATCTGACATTTTGTGTGAGCCACTAGCAACTGTTTGAAA
TATCTTTCTAACTCTGCATAACCTTCTTCGACATCTTCTGAATTGATCTC
TAACATAGCCTTTACTTTAGCAATCTTTTCTTTAACGATTTTCTGGAGTT
TCAAGCGATCTTCTTGCCAAAGGGCGTGCTGTGTCAATATACCACGTGTT
ACTGGGCGGTGCTGCACGCCGCGGCCCGCGCGTTTAGACGCCATTGAAAT
GCGAGTGAATGAACACGGTAGAAAACTGGCTGGATGTAAAACGATAAAAT
AGCGATAACGATATGTGCGATACGATTGCGAACAGAAATCGATAACACGA
TTGGATTCGATAAATTCGATTCAAAGCGACTGTACACGAGTCGATTTTTT
GATAAAACGATATGAATCGATGAGNN Run BLAST on NCBI protein sequence of TCONS_00064100-protein >TCONS_00064100-protein ID=TCONS_00064100-protein|Name=TCONS_00064100-protein|organism=Clytia hemisphaerica|type=polypeptide|length=281bp
MASKRAGRGVQHRPVTRGILTQHALWQEDRLKLQKIVKEKIAKVKAMLEI
NSEDVEEGYAELERYFKQLLVAHTKCQMLLEHDEPKYSDLVEKLDKSVHL
IKRRMIERSLNGSVGPSSQELRTPQNSTELRTQQEQVESRKLESEAGAIK
NAHLMELARLKQLKLEQQYITKKRQAQIEAELIDNELQIAIAQSKLEVFS
KTDPLVDIPYDIPSNESYVNDYVAKHSTPAVDAPIKVPHPPSLPKSYAVS
SASLSFRRRLSPLNNDALSVAPSQSISVAPP Run BLAST on NCBI transcript from alignment at scaffold_407:285475..286500 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064100 ID=TCONS_00064100|Name=TCONS_00064100|organism=Clytia hemisphaerica|type=transcript|length=1026bp|location=Sequence derived from alignment at scaffold_407:285475..286500 (Clytia hemisphaerica)
NNCTCATCGATTCATATCGTTTTATCAAAAAATCGACTCGTGTACAGTCG
CTTTGAATCGAATTTATCGAATCCAATCGTGTTATCGATTTCTGTTCGCA
ATCGTATCGCACATATCGTTATCGCTATTTTATCGTTTTACATCCAGCCA
GTTTTCTACCGTGTTCATTCACTCGCATTTCAATGGCGTCTAAACGCGCG
GGCCGCGGCGTGCAGCACCGCCCAGTAACACGTGGTATATTGACACAGCA
CGCCCTTTGGCAAGAAGATCGCTTGAAACTCCAGAAAATCGTTAAAGAAA
AGATTGCTAAAGTAAAGGCTATGTTAGAGATCAATTCAGAAGATGTCGAA
GAAGGTTATGCAGAGTTAGAAAGATATTTCAAACAGTTGCTAGTGGCTCA
CACAAAATGTCAGATGTTGTTAGAACATGACGAACCGAAGTATTCTGACT
TGGTCGAAAAGCTAGACAAATCAGTCCATCTTATCAAGAGAAGAATGATT
GAAAGATCGTTGAATGGATCTGTTGGTCCCAGTAGTCAAGAACTAAGAAC
TCCACAGAACTCCACAGAACTTAGAACTCAACAAGAACAAGTGGAATCAA
GAAAGCTAGAATCTGAGGCAGGTGCTATCAAGAACGCTCATCTGATGGAG
TTAGCCAGACTCAAACAGCTAAAGTTAGAGCAACAGTATATCACGAAAAA
GAGGCAAGCTCAAATCGAGGCAGAATTGATCGATAATGAACTCCAAATTG
CCATTGCTCAGTCGAAGCTAGAAGTATTCTCCAAAACAGATCCATTAGTA
GACATACCTTACGACATTCCATCAAATGAAAGCTATGTCAATGATTATGT
TGCCAAGCACAGTACTCCTGCTGTCGATGCTCCAATCAAGGTGCCACACC
CTCCATCTCTGCCAAAATCTTACGCTGTTTCTTCTGCCAGTCTATCTTTC
AGAAGACGATTGTCACCACTGAATAATGATGCTTTGTCTGTAGCTCCATC
TCAGAGTATCTCCGTCGCTCCACCTN Coding sequence (CDS) from alignment at scaffold_407:285475..286500 >TCONS_00064100 ID=TCONS_00064100|Name=TCONS_00064100|organism=Clytia hemisphaerica|type=CDS|length=843bp|location=Sequence derived from alignment at scaffold_407:285475..286500 (Clytia hemisphaerica)
ATGGCGTCTAAACGCGCGGGCCGCGGCGTGCAGCACCGCCCAGTAACACG
TGGTATATTGACACAGCACGCCCTTTGGCAAGAAGATCGCTTGAAACTCC
AGAAAATCGTTAAAGAAAAGATTGCTAAAGTAAAGGCTATGTTAGAGATC
AATTCAGAAGATGTCGAAGAAGGTTATGCAGAGTTAGAAAGATATTTCAA
ACAGTTGCTAGTGGCTCACACAAAATGTCAGATGTTGTTAGAACATGACG
AACCGAAGTATTCTGACTTGGTCGAAAAGCTAGACAAATCAGTCCATCTT
ATCAAGAGAAGAATGATTGAAAGATCGTTGAATGGATCTGTTGGTCCCAG
TAGTCAAGAACTAAGAACTCCACAGAACTCCACAGAACTTAGAACTCAAC
AAGAACAAGTGGAATCAAGAAAGCTAGAATCTGAGGCAGGTGCTATCAAG
AACGCTCATCTGATGGAGTTAGCCAGACTCAAACAGCTAAAGTTAGAGCA
ACAGTATATCACGAAAAAGAGGCAAGCTCAAATCGAGGCAGAATTGATCG
ATAATGAACTCCAAATTGCCATTGCTCAGTCGAAGCTAGAAGTATTCTCC
AAAACAGATCCATTAGTAGACATACCTTACGACATTCCATCAAATGAAAG
CTATGTCAATGATTATGTTGCCAAGCACAGTACTCCTGCTGTCGATGCTC
CAATCAAGGTGCCACACCCTCCATCTCTGCCAAAATCTTACGCTGTTTCT
TCTGCCAGTCTATCTTTCAGAAGACGATTGTCACCACTGAATAATGATGC
TTTGTCTGTAGCTCCATCTCAGAGTATCTCCGTCGCTCCACCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064100-exon-scaffold_407-1491911889:285475..286500 | TCONS_00064100-exon-scaffold_407-1491911889:285475..286500 | Clytia hemisphaerica | exon |
| TCONS_00064100-exon-scaffold_407-1510915933:285475..286500 | TCONS_00064100-exon-scaffold_407-1510915933:285475..286500 | Clytia hemisphaerica | exon |
| TCONS_00064100-exon-scaffold_407-1575043694:285475..286500 | TCONS_00064100-exon-scaffold_407-1575043694:285475..286500 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_407 | supercontig | scaffold_407:285475..286500 . |
Blast
The following BLAST results are available for this feature:
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