TCONS_00064096 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064096
Unique NameTCONS_00064096
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length348

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064096 ID=TCONS_00064096|Name=TCONS_00064096|organism=Clytia hemisphaerica|type=transcript|length=348bp
AgactgatgaaatttgtaagtgaGACTTTCCCTTTTTTTTAGGTTCTGAT
ATATGTTGGTATATCAGAGTGTAGATgcaaatggtttgttttgagaTATA
TCCGGACTCTTGGGACAGCCTCACTCTCATGCATATTTAAGGCCTCAGTT
CTTCCACATGgacctttttcagttcttcatttgCCTAGTGCTGACTGCTG
TATTTTTGCTCCACCACCCTCCCCAGCATCTTTTGGGAagcttccttttt
ctttttatgatcAACGTATATGTTTTTAGTGATGCCCTTTTTTGTCAATG
TCAGTTTCCGGTCTATATTTACTCATGTTTTTGTTATTAGTTTGTATT
Run BLAST on NCBI

transcript from alignment at scaffold_407:257349..257696

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064096 ID=TCONS_00064096|Name=TCONS_00064096|organism=Clytia hemisphaerica|type=transcript|length=348bp|location=Sequence derived from alignment at scaffold_407:257349..257696 (Clytia hemisphaerica)
AATACAAACTAATAACAAAAACATGAGTAAATATAGACCGGAAACTGACA
TTGACAAAAAAGGGCATCACTAAAAACATATACGTTgatcataaaaagaa
aaaggaagctTCCCAAAAGATGCTGGGGAGGGTGGTGGAGCAAAAATACA
GCAGTCAGCACTAGGcaaatgaagaactgaaaaaggtcCATGTGGAAGAA
CTGAGGCCTTAAATATGCATGAGAGTGAGGCTGTCCCAAGAGTCCGGATA
TAtctcaaaacaaaccatttgcATCTACACTCTGATATACCAACATATAT
CAGAACCTAAAAAAAAGGGAAAGTCtcacttacaaatttcatcagtcT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040184XLOC_040184Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064096-exon-scaffold_407-1491911889:257349..257696TCONS_00064096-exon-scaffold_407-1491911889:257349..257696Clytia hemisphaericaexon
TCONS_00064096-exon-scaffold_407-1510915933:257349..257696TCONS_00064096-exon-scaffold_407-1510915933:257349..257696Clytia hemisphaericaexon
TCONS_00064096-exon-scaffold_407-1575043694:257349..257696TCONS_00064096-exon-scaffold_407-1575043694:257349..257696Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_407supercontigscaffold_407:257349..257696 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.255235	0.746683	1.16763	1.14284	2.54103	2.5575	3.97298	2.54766	1.72065	0.54483	1.55152	0.963517	0.962834	1.19279	0.579724	0.311066	0	0.392776	0.271321	0	1.18257	0	0	0	6.38136	3.61738	0	0.373506	0.459462	0.288629
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064096 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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