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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064075 ID=TCONS_00064075|Name=TCONS_00064075|organism=Clytia hemisphaerica|type=transcript|length=1770bp
atgccgactatcattcctctctgATGGGAAATTGGCATCcaagaaaatag
gaaaatttagCGGGAaatttagcgtgggcggccgccaatacgccattaTA
ATATCAGATAAGGATAATCCTCACATCATCTTTCGTTGACGACTTATAAT
ATGTTGTGCTTTGAGTGTTGGTAAGTTAACCAAAAAATACTAGGAGGGGC
ACAAATTGTTTCCCTGAGGTTATGATGAATAAATCCTGGCAGTTTGATAA
CTCGGCTTATATTTAAACACTCTTTAGTTCGACACTAAGAATAAACACAA
TGAAAGCATTGCTAATCACCATAGCAACAATCTCATCTATCATCAACACC
ATCTCAGGGCACGGTGTTATGGTCATCCCACATAACTGGTTAGATTATAA
ACAATGGGTCAAAACAAGAAGCCATGGTTTTGTGTACGAGTACGTTGGTA
TGAAATCACAACAACAGTGTCTTCCTGGCATGTTTTTCCCTCGCGATCTT
GCGTGCAAGGACTATAATAATTGTGCTGGGTTTATTGAGCCGACAGCAGC
TTGTATGTGGTTCACAAACTACACGTTCATTCAAGAACCAACCCTTGATC
CTGAGCTATGGACCTATCCCCATGTCGAAGACCCATCGATGGTGAAATAT
AACCCGTGGCGTTCTCCTGGCGCCGCACCAATTAATTCACCCTGTGGGGC
GGCTGGCGGAAATCCAGATGGANAAAGACCCATCAATGGTGAAATATAAC
CCGTGGCGTTCTCCTGGCGCCGCACCAATTAATTCACCCTGTGGGGCGGC
TGGCGGAAATCCAGATGGATGTTTGGGCGGACCATACTGTGGGCAAATGA
AAGGAGGATTCGCATACGGACCAAGATTGAAAGATTTGGACCTATCCTCA
CATCACAAAGCCTACGTCACTAACTGGACGCGCGGGGAGGCAGTAGAGGT
TGCATGGGGTATCCGAGCGAACCACGGAGGAGGCTATTCTTACAGGCTAT
GTAAGATGCCAAAAGAAGGGCGGAAGGCGTTAACAGAGGAATGCTTCCAG
CAAACGCCATTGAGATTCGTCGGTGATAAACAGTGGGTACAGTATGGGGA
AGACGAATCAACTAGATATGAGTTCACCGCAGCCAGAACTGATAATGGTA
AAGCTATTTCATCAAATTCTTTCTAAACAATGCCTGGAGGTGCTTTGGAA
AGAATTCGCTGGCCACTTTTATCAACTATTTACAACTTAACTTAATATTG
TGTGTGAGAATCCATCAAGAAGTCTGATTTACCTTTCTTTATTAAAAAGA
TTCTCTCAAAATGTTTTGCATGATTTAAGGTTGTTTAGCTAAATATAAAA
ATCTATTATTCCAGGCACCACACCACCAGGATCCCAGTGGACCCGCAACC
CAATCCCACCATGTAATGGCTTCGCTGGCGGTATAAATGAAGATCATCCG
TGTAAAAATGGGACCCAGTTCCCAGCCCCTGGACCCGGGCTCGAAGGATT
CGGTGTtaagtttaaaaacattttatggaCATTTGAGTTTGTGATTATTG
ACATGTTGCACATTCCTGAGGACGTTGAACCAGGAGAATACGTGGTTTCG
TTCAGATGGGACGGTGAACAATTTCCACAAGTGTGGAATATGTGCTCCTC
TGTNCGTTCAGATGGGACGGTGAACAATTTCCACAAGTGTGGAATATGTG
CTCTTCTGTATGGCTGAACTGAACAAGGTTGATGTTGGTCTAATATTTGT
GACGTCTCataggaaaaaaa Run BLAST on NCBI transcript from alignment at scaffold_407:268793..270878- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064075 ID=TCONS_00064075|Name=TCONS_00064075|organism=Clytia hemisphaerica|type=transcript|length=2086bp|location=Sequence derived from alignment at scaffold_407:268793..270878- (Clytia hemisphaerica)
ATGCCGACTATCATTCCTCTCTGATGGGAAATTGGCATCCAAGAAAATAG
GAAAATTTAGCGGGAAATTTAGCGTGGGCGGCCGCCAATACGCCATTATA
ATATCAGATAAGGATAATCCTCACATCATCTTTCGTTGACGACTTATAAT
ATGTTGTGCTTTGAGTGTTGGTAAGTTAACCAAAAAATACTAGGAGGGGC
ACAAATTGTTTCCCTGAGGTTATGATGAATAAATCCTGGCAGTTTGATAA
CTCGGCTTATATTTAAACACTCTTTAGTTCGACACTAAGAATAAACACAA
TGAAAGCATTGCTAATCACCATAGCAACAATCTCATCTATCATCAACACC
ATCTCAGGGCACGGTGTTATGGTCATCCCACATAACTGGTTAGATTATAA
ACAATGGGTCAAAACAAGAAGCCATGGTTTTGTGTACGAGTACGTTGGTA
TGAAATCACAACAACAGTGTCTTCCTGGCATGTTTTTCCCTCGCGATCTT
GCGTGCAAGGACTATAATAATTGTGCTGGGTTTATTGAGCCGACAGCAGC
TTGTATGTGGTTCACAAACTACACGTTCATTCAAGAACCAACCCTTGATC
CTGAGCTATGGACCTATCCCCATGTCGAAGACCCATCGATGGTGAAATAT
AACCCGTGGCGTTCTCCTGGCGCCGCACCAATTAATTCACCCTGTGGGGC
GGCTGGCGGAAATCCAGATGGANAAAGACCCATCAATGGTGAAATATAAC
CCGTGGCGTTCTCCTGGCGCCGCACCAATTAATTCACCCTGTGGGGCGGC
TGGCGGAAATCCAGATGGATGTTTGGGCGGACCATACTGTGGGCAAATGA
AAGGAGGATTCGCATACGGACCAAGGTTATACATTTAATTCAAAGTAGCT
TCAGATATTTTCATTAAAAAGGTTGGGTCTTTGAGTTTATATTTCCCTTT
ACATGACTGTCTAATAATAATTTTGTAATTGACAAAAAGTTGAAGTGGGT
GCCACAAACCATTTTTTCGTTATCTAACTTGGTTTGTTAGATTCCTCAAG
TGGATTCCTTAATGACTGTTAAGTAAAAGTCACACCTAATTGTGTTAAAG
TAGATAATTGCTATGCTGATGCAGACTTTTTTGCATATTCTATCACAACT
GTCACAAGTAAGAATTAAACAAACATTCTTTTACATATTAGATTGAAAGA
TTTGGACCTATCCTCACATCACAAAGCCTACGTCACTAACTGGACGCGCG
GGGAGGCAGTAGAGGTTGCATGGGGTATCCGAGCGAACCACGGAGGAGGC
TATTCTTACAGGCTATGTAAGATGCCAAAAGAAGGGCGGAAGGCGTTAAC
AGAGGAATGCTTCCAGCAAACGCCATTGAGATTCGTCGGTGATAAACAGT
GGGTACAGTATGGGGAAGACGAATCAACTAGATATGAGTTCACCGCAGCC
AGAACTGATAATGGTAAAGCTATTTCATCAAATTCTTTCTAAACAATGCC
TGGAGGTGCTTTGGAAAGAATTCGCTGGCCACTTTTATCAACTATTTACA
ACTTAACTTAATATTGTGTGTGAGAATCCATCAAGAAGTCTGATTTACCT
TTCTTTATTAAAAAGATTCTCTCAAAATGTTTTGCATGATTTAAGGTTGT
TTAGCTAAATATAAAAATCTATTATTCCAGGCACCACACCACCAGGATCC
CAGTGGACCCGCAACCCAATCCCACCATGTAATGGCTTCGCTGGCGGTAT
AAATGAAGATCATCCGTGTAAAAATGGGACCCAGTTCCCAGCCCCTGGAC
CCGGGCTCGAAGGATTCGGTGTTAAGTTTAAAAACATTTTATGGACATTT
GAGTTTGTGATTATTGACATGTTGCACATTCCTGAGGACGTTGAACCAGG
AGAATACGTGGTTTCGTTCAGATGGGACGGTGAACAATTTCCACAAGTGT
GGAATATGTGCTCCTCTGTNCGTTCAGATGGGACGGTGAACAATTTCCAC
AAGTGTGGAATATGTGCTCTTCTGTATGGCTGAACTGAACAAGGTTGATG
TTGGTCTAATATTTGTGACGTCTCATAGGAAAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064075-exon-scaffold_407-1575043694:270004..270878 | TCONS_00064075-exon-scaffold_407-1575043694:270004..270878 | Clytia hemisphaerica | exon |
| TCONS_00064075-exon-scaffold_407-1575043694:268793..269687 | TCONS_00064075-exon-scaffold_407-1575043694:268793..269687 | Clytia hemisphaerica | exon |
| TCONS_00064075-exon-scaffold_407-1510915933:270004..270878 | TCONS_00064075-exon-scaffold_407-1510915933:270004..270878 | Clytia hemisphaerica | exon |
| TCONS_00064075-exon-scaffold_407-1510915933:268793..269687 | TCONS_00064075-exon-scaffold_407-1510915933:268793..269687 | Clytia hemisphaerica | exon |
| TCONS_00064075-exon-scaffold_407-1491911889:270004..270878 | TCONS_00064075-exon-scaffold_407-1491911889:270004..270878 | Clytia hemisphaerica | exon |
| TCONS_00064075-exon-scaffold_407-1491911889:268793..269687 | TCONS_00064075-exon-scaffold_407-1491911889:268793..269687 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_407 | supercontig | scaffold_407:268793..270878 - |
Blast
The following BLAST results are available for this feature:
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