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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064058 ID=TCONS_00064058|Name=TCONS_00064058|organism=Clytia hemisphaerica|type=transcript|length=1396bp
NCcaccacaacaacaaccaccacAAACTCACCTCCACCGACCAACACAAC
AACAACTGCAAACACAACAACAGCAAACACAACTACTGCAAACACAACGG
CTCCAGTAACCTCACAAGCACCTGTCACTCAAAAGCctaaatcgaaatat
tcgaaAGGAGTCATTGCTGCCATTTGCATCCTGGTCATTCTGGTTGTACT
GTTGATCATCGATATCATCTTATACCGGAAAGATATGGGCGTTATTTACA
CCATCAGACGGGCGTGTGGTGGTTCCTGGTTTTATTCCGTCAGCGGTCGA
AACCCAACCTTAGCTATGAAACCCAGGGTGTAAAAGCTAAAGGTCATACT
TCTGCATACCACGTGCGTTAGCGGCCGAAATCCAAGCTAAGCTTGCTTTC
TGTATGATGGCATTGCATTGCATTGCAAAGTCACCccttctctttctctt
ttctcttttcgtTAGCTAGTATTGGGAGATATGCACAcataaattttaaa
gaaattatatACCATATAACGACCAAGAagagaaatcaaagaaatttgAT
CTCAAAGTAAGTTTGAATAAGAAACCTGCCTTACATGACTGAAACATAGG
tagtttctttactttactttaGAGTCACAAATCCTTCACTGTCCTGCACT
GTCAACTTTCAATTTCCACTTGTTTTTTTGTTCCCGCCTAAAATTTAGCC
TAGGCTCAAGTACGAAATGCACGAAATGAGACGCCATTAAACTGCCAGCC
TGAAGTCCACCCTTTACGCCTTTACATGGGTTTCGGCCGCTAAAAAGTTG
ATTTCATGACATAAGCTGGGTTTCGATTTTCGGTTCCGATTCCACTTGAA
CGCCAATAAACCAACATTCACGCTGCAAATGAGATTTGCAGTTTGACcca
ctttcatttttttaaagatgcATCGATTGGCAAAATTCTTCTGTTCAGTT
TcacttttttaacaatttttaccGACAAAAACAAATATTCTTAAGATCTT
GTAACGCTTTTTGTATTCCATTTTTGTAAttgattttttggtattttgta
acatatcatctttttttttgatttctcttCTATCACCAAAATCATCGTGA
CCGTTTTtgtatttaagggctctgaccatagtgaattcttaatatttgcc
acgtacaaaatataaatttttccttaatgtagcacacaaaactgtggcat
gttatacattttccaTTAGGCCAATTATCtttgagtctgaaaattaaaga
ttcggaatgaaaaaatttgatgaagaagaaaatgaagacttttgcgaaga
agagtatttcaactttgaagaaacATCACTTACAAGgacgtttctttcat
ttcgaataGGTGGAATTTTCGGGGTTTTACGTACGTTCAGAAACTG Run BLAST on NCBI protein sequence of TCONS_00064058-protein >TCONS_00064058-protein ID=TCONS_00064058-protein|Name=TCONS_00064058-protein|organism=Clytia hemisphaerica|type=polypeptide|length=110bp
XTTTTTTTNSPPPTNTTTTANTTTANTTTANTTAPVTSQAPVTQKPKSKY
SKGVIAAICILVILVVLLIIDIILYRKDMGVIYTIRRACGGSWFYSVSGR
NPTLAMKPRV Run BLAST on NCBI transcript from alignment at scaffold_407:136091..137711- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064058 ID=TCONS_00064058|Name=TCONS_00064058|organism=Clytia hemisphaerica|type=transcript|length=1621bp|location=Sequence derived from alignment at scaffold_407:136091..137711- (Clytia hemisphaerica)
NCCACCACAACAACAACCACCACAAACTCACCTCCACCGACCAACACAAC
AACAACTGCAAACACAACAACAGCAAACACAACTACTGCAAACACAACGG
CTCCAGTAACCTCACAAGGTTTGACCCCGGTTTGGGGCATTATTTTTCGG
CAAAGTTATTACTAAGATTTTTTCGAGCCAATATGATATAATTATCAACT
ATGCTTAAAAAAGTTTAAAATCGATTTTGATATCAATGACTTAATGGGGT
TCTAACTTTTAATGACCTGATTTTTTTCTCAAAAACTTTATTTATGGATA
AAATGTTTAAATGCAGACACTCTACATTTAACCTTATTTTCAGCACCTGT
CACTCAAAAGCCTAAATCGAAATATTCGAAAGGAGTCATTGCTGCCATTT
GCATCCTGGTCATTCTGGTTGTACTGTTGATCATCGATATCATCTTATAC
CGGAAAGATATGGGCGTTATTTACACCATCAGACGGGCGTGTGGTGGTTC
CTGGTTTTATTCCGTCAGCGGTCGAAACCCAACCTTAGCTATGAAACCCA
GGGTGTAAAAGCTAAAGGTCATACTTCTGCATACCACGTGCGTTAGCGGC
CGAAATCCAAGCTAAGCTTGCTTTCTGTATGATGGCATTGCATTGCATTG
CAAAGTCACCCCTTCTCTTTCTCTTTTCTCTTTTCGTTAGCTAGTATTGG
GAGATATGCACACATAAATTTTAAAGAAATTATATACCATATAACGACCA
AGAAGAGAAATCAAAGAAATTTGATCTCAAAGTAAGTTTGAATAAGAAAC
CTGCCTTACATGACTGAAACATAGGTAGTTTCTTTACTTTACTTTAGAGT
CACAAATCCTTCACTGTCCTGCACTGTCAACTTTCAATTTCCACTTGTTT
TTTTGTTCCCGCCTAAAATTTAGCCTAGGCTCAAGTACGAAATGCACGAA
ATGAGACGCCATTAAACTGCCAGCCTGAAGTCCACCCTTTACGCCTTTAC
ATGGGTTTCGGCCGCTAAAAAGTTGATTTCATGACATAAGCTGGGTTTCG
ATTTTCGGTTCCGATTCCACTTGAACGCCAATAAACCAACATTCACGCTG
CAAATGAGATTTGCAGTTTGACCCACTTTCATTTTTTTAAAGATGCATCG
ATTGGCAAAATTCTTCTGTTCAGTTTCACTTTTTTAACAATTTTTACCGA
CAAAAACAAATATTCTTAAGATCTTGTAACGCTTTTTGTATTCCATTTTT
GTAATTGATTTTTTGGTATTTTGTAACATATCATCTTTTTTTTTGATTTC
TCTTCTATCACCAAAATCATCGTGACCGTTTTTGTATTTAAGGGCTCTGA
CCATAGTGAATTCTTAATATTTGCCACGTACAAAATATAAATTTTTCCTT
AATGTAGCACACAAAACTGTGGCATGTTATACATTTTCCATTAGGCCAAT
TATCTTTGAGTCTGAAAATTAAAGATTCGGAATGAAAAAATTTGATGAAG
AAGAAAATGAAGACTTTTGCGAAGAAGAGTATTTCAACTTTGAAGAAACA
TCACTTACAAGGACGTTTCTTTCATTTCGAATAGGTGGAATTTTCGGGGT
TTTACGTACGTTCAGAAACTG Coding sequence (CDS) from alignment at scaffold_407:136091..137711- >TCONS_00064058 ID=TCONS_00064058|Name=TCONS_00064058|organism=Clytia hemisphaerica|type=CDS|length=666bp|location=Sequence derived from alignment at scaffold_407:136091..137711- (Clytia hemisphaerica)
CACCTGTCACTCAAAAGCCTAAATCGAAATATTCGAAAGGAGTCATTGCT
GCCATTTGCATCCTGGTCATTCTGGTTGTACTGTTGATCATCGATATCAT
CTTATACCGGAAAGATATGGGCGTTATTTACACCATCAGACGGGCGTGTG
GTGGTTCCTGGTTTTATTCCGTCAGCGGTCGAAACCCAACCTTAGCTATG
AAACCCAGGGTGTAANCCACCACAACAACAACCACCACAAACTCACCTCC
ACCGACCAACACAACAACAACTGCAAACACAACAACAGCAAACACAACTA
CTGCAAACACAACGGCTCCAGTAACCTCACAAGCACCTGTCACTCAAAAG
CCTAAATCGAAATATTCGAAAGGAGTCATTGCTGCCATTTGCATCCTGGT
CATTCTGGTTGTACTGTTGATCATCGATATCATCTTATACCGGAAAGATA
TGGGCGTTATTTACACCATCAGACGGGCGTGTGGTGGTTCCTGGTTTTAT
TCCGTCAGCGGTCGAAACCCAACCTTAGCTATGAAACCCAGGGTGTAANC
CACCACAACAACAACCACCACAAACTCACCTCCACCGACCAACACAACAA
CAACTGCAAACACAACAACAGCAAACACAACTACTGCAAACACAACGGCT
CCAGTAACCTCACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064058-exon-scaffold_407-1575043694:137594..137711 | TCONS_00064058-exon-scaffold_407-1575043694:137594..137711 | Clytia hemisphaerica | exon |
| TCONS_00064058-exon-scaffold_407-1575043694:136091..137368 | TCONS_00064058-exon-scaffold_407-1575043694:136091..137368 | Clytia hemisphaerica | exon |
| TCONS_00064058-exon-scaffold_407-1510915933:137594..137711 | TCONS_00064058-exon-scaffold_407-1510915933:137594..137711 | Clytia hemisphaerica | exon |
| TCONS_00064058-exon-scaffold_407-1510915933:136091..137368 | TCONS_00064058-exon-scaffold_407-1510915933:136091..137368 | Clytia hemisphaerica | exon |
| TCONS_00064058-exon-scaffold_407-1491911889:137594..137711 | TCONS_00064058-exon-scaffold_407-1491911889:137594..137711 | Clytia hemisphaerica | exon |
| TCONS_00064058-exon-scaffold_407-1491911889:136091..137368 | TCONS_00064058-exon-scaffold_407-1491911889:136091..137368 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_407 | supercontig | scaffold_407:136091..137711 - |
Blast
The following BLAST results are available for this feature:
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