TCONS_00064051 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064051
Unique NameTCONS_00064051
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length325

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064051 ID=TCONS_00064051|Name=TCONS_00064051|organism=Clytia hemisphaerica|type=transcript|length=325bp
TTTGCCGATTTTCTCGCCTCTGTAGCCACTGATTCGAAATTCTCTACAAT
ATTTAACATCAAGACCGCCTCCGTCCTCACAGCTTGTCCCTCTGCTATTG
ATCGAGTTGCTTTGTCTCGATGTACCAAAATGTTATCATTGTATCTACTT
AATGTTCGTTGGATAAACGAGATTTGTGTGGAATGCAAAGACATCTGTCT
CATGGTGGTGATTTTGTGGGCTAAGGTGGTTACGTCTCGTGATAGTGTGA
TGAAGTTACTTGCAGTTGTGGAATAGGTGGTGGTTAGCTTGCTCAGATTA
TTCTCCAGACCGTCGATCATCTGAG
Run BLAST on NCBI

transcript from alignment at scaffold_407:23883..24280-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064051 ID=TCONS_00064051|Name=TCONS_00064051|organism=Clytia hemisphaerica|type=transcript|length=398bp|location=Sequence derived from alignment at scaffold_407:23883..24280- (Clytia hemisphaerica)
TTTGCCGATTTTCTCGCCTCTGTAGCCACTGATTCGAAATTCTCTACAAT
ATTTAACATCAAGACCGCCTCCGTCCTCACAGCTTGTCCCTCTGCTATTG
ATCGAGTTGCTTTGTCTCGATGTACCAAAATGTTATCATTGTATCTACTT
AATGTTCGTTGGATAAACGAGATTTGTGTGGAATGCAAAGACATCTGTCT
CATGGTGGTGATTTTGTGGGCTAAGGTGGTTACATCTCGCGATAGTGTGA
TGAAGTTGCTTGCAGTTGTGGAATAGGTGGTGGTTAGCTTGCTCAGATTA
TTNCACGTCTCGTGATAGTGTGATGAAGTTACTTGCAGTTGTGGAATAGG
TGGTGGTTAGCTTGCTCAGATTATTCTCCAGACCGTCGATCATCTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040159XLOC_040159Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064051-exon-scaffold_407-1575043694:24048..24280TCONS_00064051-exon-scaffold_407-1575043694:24048..24280Clytia hemisphaericaexon
TCONS_00064051-exon-scaffold_407-1575043694:23883..23974TCONS_00064051-exon-scaffold_407-1575043694:23883..23974Clytia hemisphaericaexon
TCONS_00064051-exon-scaffold_407-1510915933:24048..24280TCONS_00064051-exon-scaffold_407-1510915933:24048..24280Clytia hemisphaericaexon
TCONS_00064051-exon-scaffold_407-1510915933:23883..23974TCONS_00064051-exon-scaffold_407-1510915933:23883..23974Clytia hemisphaericaexon
TCONS_00064051-exon-scaffold_407-1491911889:24048..24280TCONS_00064051-exon-scaffold_407-1491911889:24048..24280Clytia hemisphaericaexon
TCONS_00064051-exon-scaffold_407-1491911889:23883..23974TCONS_00064051-exon-scaffold_407-1491911889:23883..23974Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_407supercontigscaffold_407:23883..24280 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.737787	1.30627	2.70428	0.128356	0	0	2.73743	0.269892	3.68263	3.50543	1.63891	0.813376	0	1.95827	3.33851	1.81756	2.40795	4.07346	6.22366	2.75921	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064051 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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