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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064047 ID=TCONS_00064047|Name=TCONS_00064047|organism=Clytia hemisphaerica|type=transcript|length=1582bp
AAATCAGTCTTGGAATGCCTtgggaaaagttgaaaaagataGGAAGGTTT
CTTAGCCAACACAATATCAAAACTGGTGGTCACAACAAAATGCGAAATTT
GCACAAAGAACTGCGTGGTAGTGGCTGGTGTGTTAAAACCGGTTCATTTA
TGAAGAAAATCAGCAAAagcaaatttgttttaaatgaagTGCCCTGGGGC
TACATAGAGGATTTGAAATCACACGTCCTCGAAAGAATCGACTTAATTGA
CGAGTAAAATACTACTACCACTTTATTAAGATAGATGTTGTGTTTTAACA
AAATTCTATTCGGCTAATTCACTCCTTCTCCTTTGATAAATCCAATAATA
AAATTActattcacaaaaaaaaattaaaatattttctttactgTTCAGGG
CAAAAGAATTGAAGTTTGAAGAGTTTATGAAAGATGAAGTGCATGTGAAA
ATCGGGGAAGACCATGGTGGTAACACAGGAAAGGCCTGTTATGAGATTTG
TAACCGAGATTCACCAAACAGTAAAGAAAATACAGTCatattcaattatt
ttgaagaaaaagaccaTCCACTCAACTTGAAAATAGCCTTATCACGATTT
AAAGAACAAATCGACGACCTTCAAAAGTCCAGTTGGAAGTGAGTGTTTAC
AATATTGATCTGAAAATTCTTTTGCAAGCAATGAAATAGCTAAAACTAAT
CTAGATTACTGTGGGCttgtaattgtttttgtttaattAATTGTGAAgtt
gtcttttctttttcagtgacAAAAAGATTCGTATGTTTTTGATGGGGGAC
TACGAGTTCCTGTGTAATGCATATGGCATTAGTGGAGCAAGTGGTAAATA
TATGAAATACGtattataaatatatttttataatacGATACTTGATagat
aatgaaaaatgaaatatacaTACAGCAAAGTAATATAATACCTAGTAAAT
CTTCCAGTATTATTATCAACTGCTTAGCTTAGCTAAGATTGTACCTTATC
TTGGGAAAATAAAGTTGGGATTTGTTTTGGCCAAAGAAGTTTCACATTTA
AAATTTACTATTTTCAGGGCGCCACTGCTGTTTACTTTGTCAAGCAACCA
AGGAAGAGATTCAAAAGCCAAGAAAAAGTCGAAATTGTAAAACAAGAACT
CTAAAGACACTTGATGAGAACCtcaggaattttcaaaaacacgGAAACCT
GTCGAAAGCTAAGGAGCATTTCAATGTCATCGAAGAAAGACTCTTTAACA
TACCTCTGACACAgGTTTCAATCCCTGCTTTACACATTTCGTTGGGCACA
TACAAGAAATTTTTCGACCTTTTGGAAGAATACTGTTACCAGCTGGACTT
TATGATCGCAGGTTCGACAAGTCAAGCAGATGGATTAGAACGGTCCAAAA
TTGACAAACTTGGTGAAACGTGGCAGGAAATCACTCTTTTACGGCAACAG
ATTCGGGATCTTGATCGCACCATCAATTTGGTTCATGATGCCATTGCTCA
AAACATTGCCAAAGATCCTGCACACGAGAAAGAAATAAGAGCTGTTTATG
AACCCCGTCTGTTACACTTGTCTGACTTGGTT Run BLAST on NCBI transcript from alignment at scaffold_407:337338..339223+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064047 ID=TCONS_00064047|Name=TCONS_00064047|organism=Clytia hemisphaerica|type=transcript|length=1886bp|location=Sequence derived from alignment at scaffold_407:337338..339223+ (Clytia hemisphaerica)
AAATCAGTCTTGGAATGCCTtgggaaaagttgaaaaagataGGAAGGTAC
AGTACCTGGATATCTTTAtctttttaacaaataaaaaacgCAACTGAGGT
GCTTCTCAAAAGGTTGAGCTACGAATTGGTGctaaaaagaaatttctaaa
ttgtgaagcaataaatattttcaaaattaaaaagaaaatattctatatat
taagttaaatatttcattttgtttAAGGTTTCTTAGCCAACACAATATCA
AAACTGGTGGTCACAACAAAATGCGAAATTTGCACAAAGAACTGCGTGGT
AGTGGCTGGTGTGTTAAAACCGGTTCATTTATGAAGAAAATCAGCAAAag
caaatttgttttaaatgaagTGCCCTGGGGCTACATAGAGGATTTGAAAT
CACACGTCCTCGAAAGAATCGACTTAATTGACGAGTAAAATACTACTACC
ACTTTATTAAGATAGATGTTGTGTTTTAACAAAATTCTATTCGGCTAATT
CACTCCTTCTCCTTTGATAAATCCAATAATAAAATTActattcacaaaaa
aaaattaaaatattttctttactgTTCAGGGCAAAAGAATTGAAGTTTGA
AGAGTTTATGAAAGATGAAGTGCATGTGAAAATCGGGGAAGACCATGGTG
GTAACACAGGAAAGGCCTGTTATGAGATTTGTAACCGAGATTCACCAAAC
AGTAAAGAAAATACAGTCatattcaattattttgaagaaaaagaccaTCC
ACTCAACTTGAAAATAGCCTTATCACGATTTAAAGAACAAATCGACGACC
TTCAAAAGTCCAGTTGGAAGTGAGTGTTTACAATATTGATCTGAAAATTC
TTTTGCAAGCAATGAAATAGCTAAAACTAATCTAGATTACTGTGGGCttg
taattgtttttgtttaattAATTGTGAAgttgtcttttctttttcagtga
cAAAAAGATTCGTATGTTTTTGATGGGGGACTACGAGTTCCTGTGTAATG
CATATGGCATTAGTGGAGCAAGTGGTAAATATATGAAATACGtattataa
atatatttttataatacGATACTTGATagataatgaaaaatgaaatatac
aTACAGCAAAGTAATATAATACCTAGTAAATCTTCCAGTATTATTATCAA
CTGCTTAGCTTAGCTAAGATTGTACCTTATCTTGGGAAAATAAAGTTGGG
ATTTGTTTTGGCCAAAGAAGTTTCACATTTAAAATTTACTATTTTCAGGG
CGCCACTGCTGTTTACTTTGTCAAGCAACCAAGGAAGAGATTCAAAAGCC
AAGAAAAAGTCGAAATTGTAAAACAAGAACTCTAAAGACACTTGATGAGA
ACCtcaggaattttcaaaaacacgGAAACCTGTCGAAAGCTAAGGAGCAT
TTCAATGTCATCGAAGAAAGACTCTTTAACATACCTCTGACACAggtatt
gaattgaaaaaacactTTGATTCATTATATTCACCAATAATATTCCACTT
ATTTGGTCCAATCAAAATTCACATGAACAATAGTGGAACTTAATGAAACA
ACTTTTCTAATCTTTCAGGTTTCAATCCCTGCTTTACACATTTCGTTGGG
CACATACAAGAAATTTTTCGACCTTTTGGAAGAATACTGTTACCAGCTGG
ACTTTATGATCGCAGGTTCGACAAGTCAAGCAGATGGATTAGAACGGTCC
AAAATTGACAAACTTGGTGAAACGTGGCAGGAAATCACTCTTTTACGGCA
ACAGATTCGGGATCTTGATCGCACCATCAATTTGGTTCATGATGCCATTG
CTCAAAACATTGCCAAAGATCCTGCACACGAGAAAGAAATAAGAGCTGTT
TATGAACCCCGTCTGTTACACTTGTCTGACTTGGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064047-exon-scaffold_407-1491911889:337338..337383 | TCONS_00064047-exon-scaffold_407-1491911889:337338..337383 | Clytia hemisphaerica | exon |
| TCONS_00064047-exon-scaffold_407-1510915933:337338..337383 | TCONS_00064047-exon-scaffold_407-1510915933:337338..337383 | Clytia hemisphaerica | exon |
| TCONS_00064047-exon-scaffold_407-1575043694:337338..337383 | TCONS_00064047-exon-scaffold_407-1575043694:337338..337383 | Clytia hemisphaerica | exon |
| TCONS_00064047-exon-scaffold_407-1491911889:337565..338782 | TCONS_00064047-exon-scaffold_407-1491911889:337565..338782 | Clytia hemisphaerica | exon |
| TCONS_00064047-exon-scaffold_407-1510915933:337565..338782 | TCONS_00064047-exon-scaffold_407-1510915933:337565..338782 | Clytia hemisphaerica | exon |
| TCONS_00064047-exon-scaffold_407-1575043694:337565..338782 | TCONS_00064047-exon-scaffold_407-1575043694:337565..338782 | Clytia hemisphaerica | exon |
| TCONS_00064047-exon-scaffold_407-1491911889:338906..339223 | TCONS_00064047-exon-scaffold_407-1491911889:338906..339223 | Clytia hemisphaerica | exon |
| TCONS_00064047-exon-scaffold_407-1510915933:338906..339223 | TCONS_00064047-exon-scaffold_407-1510915933:338906..339223 | Clytia hemisphaerica | exon |
| TCONS_00064047-exon-scaffold_407-1575043694:338906..339223 | TCONS_00064047-exon-scaffold_407-1575043694:338906..339223 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_407 | supercontig | scaffold_407:337338..339223 + |
Blast
The following BLAST results are available for this feature:
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