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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064043 ID=TCONS_00064043|Name=TCONS_00064043|organism=Clytia hemisphaerica|type=transcript|length=2151bp
GCTAGAACTctttttttcgtatttttagCCCGGCTGCGGACCTAATTTAA
TTCCGATCCCTTACGTcttattatgaaaaaaaaataagggccggcgtaat
aAGAGccgataattatttttttttttttcctatGAGACGTCACAAATATT
AGACCAACATCAACCTTGTTCAGTTCAGCCATACAGAAGAGCACATATTC
CACACTTGTGGAAATTGTTCACCGTCCCATCTGAACGAAACCACGTATTC
TCCTGGTTCAACGTCCTCAGGAATGTGCAACATGTCAATAATCACAAACT
CAAATGtccataaaatgtttttaaacttaACACCGAATCCTTCGAGCCCG
GGTCCAGGGGCTGGGAACTGGGTCCCATTTTTACACGGATGATCTTCATT
TATACCGCCAGCGAAGCCATTACATGGTGGGATTGGGTTGCGGGTCCACT
GGGATCCTGGTGGTGTGGTGCCTGGAATAATAGATTTTTATATTTAGCTA
AACAACCTTAAATCATGCAAAACATTTTGAGAGAATCTTTTTAATAAAGA
AAGGTAAATCAGACTTCTTGATGGATTCTCACACACAATATTAAGTTAAG
TTGTAAATAGTTGATAAAAGTGGCCAGCGAATTCTTTCCAAAGCACCTCC
AGGCATTGTTTAGAAAGAATTTGATGAAATAGCTTTACCATTATCAGTTC
TGGCTGCGGTGAACTCATATCTAGTTGATTCGTCTTCCCCATACTGTACC
CACTGTTTATCACCGACGAATCTCAATGGCGTTTGCTGGAAGCATTCCTC
TGTTAACGCCTTCCGCCCTTCTTTTGGCATCTTACATAGCCTGTAAGAAT
AGCCTCCTCCGTGGTTCGCTCGGATACCCCATGCAACCTCTACTGCCTCC
CCGCGCGTCCAGTTAGTGACGTAGGCTTTGTGATGTGAGGATAGGTCCAA
ATCTTTCAATCTAATATGTAAAAGAATGTTTGTTTAATTCTTACTTGTGA
CAGTTGTGATAGAATATGCAAAAAAGTCTGCATCAGCATAGCAATTATCT
ACTTTAACACAATTAGGTGTGACTTTTACTTAACAGTCATTAAGGAATCC
ACTTGAGGAATCTAACAAACCAAGTTAGATAACGAAAAAATGGTTTGTGG
CACCCACTTCAACTTTTTGTCAATTACAAAATTATTATTAGACAGTCATG
TAAAGGGAAATATAAACTCAAAGACCCaacctttttaatgaaaatatctG
AAGCTACTTTGAATTAAATGTATAACCTTGGTCCGTATGCGAATCCTCCT
TTCATTTGCCCACAGTATGGTCCGCCCAAACATCCATCTGGATTTCCGCC
AGCCGCCCCACAGGGTGAATTAATTGGTGCGGCGCCAGGAGAACGCCACG
GGTTATATTTCACCATTGATGGGTCTTTNTCCATCTGGATTTCCGCCAGC
CGCCCCACAGGGTGAATTAATTGGTGCGGCGCCAGGAGAACGCCACGGGT
TATATTTCACCATCGATGGGTCTTCGACATGGGGATAGGTCCATAGCTCA
GGATCAAGGGTTGGTTCTTGAATGAACGTGTAGTTTGTGAACCACATACA
AGCTGCTGTCGGCTCAATAAACCCAGCACAATTATTATAGTCCTTGCACG
CAAGATCGCGAGGGAAAAACATGCCAGGAAGACACTGTTGTTGTGATTTC
ATACCAACGTACTCGTACACAAAACCATGGCTTCTTGTTTTGACCCATTG
TTTATAATCTAACCAGTTATGTGGGATGACCATAACACCGTGCCCTGAGA
TGGTGTTGATGATAGATGAGATTGTTGCTATGGTGATTAGCAATGCTTTC
ATTGTGTTTATTCTTAGTGTCGAACTAAAGAGTGTTTAAATATAAGCCGA
GTTATCAAACTGCCAGGATTTATTCATCATAACCTCAGGGAAACAATTTG
TGCCCCTCCTAGTATTTTTTGGTTAACTTACCAACACTCAAAGCACAACA
TATTATAAGTCGTCAACGAAAGATGATGTGAGGATTATCCTTATCTGATA
TTAtaatggcgtattggcggccgcccacgctaaattTCCCGctaaatttt
cctattttcttgGATGCCAATTTCCCATcagagaggaatgatagtcggca
t Run BLAST on NCBI transcript from alignment at scaffold_407:268672..270878+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064043 ID=TCONS_00064043|Name=TCONS_00064043|organism=Clytia hemisphaerica|type=transcript|length=2207bp|location=Sequence derived from alignment at scaffold_407:268672..270878+ (Clytia hemisphaerica)
GCTAGAACTctttttttcgtatttttagCCCGGCTGCGGACCTAATTTAA
TTCCGATCCCTTACGTcttattatgaaaaaaaaataagggccggcgtaat
aAGAGccgataattatttttttttttttcctatGAGACGTCACAAATATT
AGACCAACATCAACCTTGTTCAGTTCAGCCATACAGAAGAGCACATATTC
CACACTTGTGGAAATTGTTCACCGTCCCATCTGAACGNACAGAGGAGCAC
ATATTCCACACTTGTGGAAATTGTTCACCGTCCCATCTGAACGAAACCAC
GTATTCTCCTGGTTCAACGTCCTCAGGAATGTGCAACATGTCAATAATCA
CAAACTCAAATGtccataaaatgtttttaaacttaACACCGAATCCTTCG
AGCCCGGGTCCAGGGGCTGGGAACTGGGTCCCATTTTTACACGGATGATC
TTCATTTATACCGCCAGCGAAGCCATTACATGGTGGGATTGGGTTGCGGG
TCCACTGGGATCCTGGTGGTGTGGTGCCTGGAATAATAGATTTTTATATT
TAGCTAAACAACCTTAAATCATGCAAAACATTTTGAGAGAATCTTTTTAA
TAAAGAAAGGTAAATCAGACTTCTTGATGGATTCTCACACACAATATTAA
GTTAAGTTGTAAATAGTTGATAAAAGTGGCCAGCGAATTCTTTCCAAAGC
ACCTCCAGGCATTGTTTAGAAAGAATTTGATGAAATAGCTTTACCATTAT
CAGTTCTGGCTGCGGTGAACTCATATCTAGTTGATTCGTCTTCCCCATAC
TGTACCCACTGTTTATCACCGACGAATCTCAATGGCGTTTGCTGGAAGCA
TTCCTCTGTTAACGCCTTCCGCCCTTCTTTTGGCATCTTACATAGCCTGT
AAGAATAGCCTCCTCCGTGGTTCGCTCGGATACCCCATGCAACCTCTACT
GCCTCCCCGCGCGTCCAGTTAGTGACGTAGGCTTTGTGATGTGAGGATAG
GTCCAAATCTTTCAATCTAATATGTAAAAGAATGTTTGTTTAATTCTTAC
TTGTGACAGTTGTGATAGAATATGCAAAAAAGTCTGCATCAGCATAGCAA
TTATCTACTTTAACACAATTAGGTGTGACTTTTACTTAACAGTCATTAAG
GAATCCACTTGAGGAATCTAACAAACCAAGTTAGATAACGAAAAAATGGT
TTGTGGCACCCACTTCAACTTTTTGTCAATTACAAAATTATTATTAGACA
GTCATGTAAAGGGAAATATAAACTCAAAGACCCaacctttttaatgaaaa
tatctGAAGCTACTTTGAATTAAATGTATAACCTTGGTCCGTATGCGAAT
CCTCCTTTCATTTGCCCACAGTATGGTCCGCCCAAACATCCATCTGGATT
TCCGCCAGCCGCCCCACAGGGTGAATTAATTGGTGCGGCGCCAGGAGAAC
GCCACGGGTTATATTTCACCATTGATGGGTCTTTNTCCATCTGGATTTCC
GCCAGCCGCCCCACAGGGTGAATTAATTGGTGCGGCGCCAGGAGAACGCC
ACGGGTTATATTTCACCATCGATGGGTCTTCGACATGGGGATAGGTCCAT
AGCTCAGGATCAAGGGTTGGTTCTTGAATGAACGTGTAGTTTGTGAACCA
CATACAAGCTGCTGTCGGCTCAATAAACCCAGCACAATTATTATAGTCCT
TGCACGCAAGATCGCGAGGGAAAAACATGCCAGGAAGACACTGTTGTTGT
GATTTCATACCAACGTACTCGTACACAAAACCATGGCTTCTTGTTTTGAC
CCATTGTTTATAATCTAACCAGTTATGTGGGATGACCATAACACCGTGCC
CTGAGATGGTGTTGATGATAGATGAGATTGTTGCTATGGTGATTAGCAAT
GCTTTCATTGTGTTTATTCTTAGTGTCGAACTAAAGAGTGTTTAAATATA
AGCCGAGTTATCAAACTGCCAGGATTTATTCATCATAACCTCAGGGAAAC
AATTTGTGCCCCTCCTAGTATTTTTTGGTTAACTTACCAACACTCAAAGC
ACAACATATTATAAGTCGTCAACGAAAGATGATGTGAGGATTATCCTTAT
CTGATATTAtaatggcgtattggcggccgcccacgctaaattTCCCGcta
aattttcctattttcttgGATGCCAATTTCCCATcagagaggaatgatag
tcggcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064043-exon-scaffold_407-1491911889:268672..268865 | TCONS_00064043-exon-scaffold_407-1491911889:268672..268865 | Clytia hemisphaerica | exon |
| TCONS_00064043-exon-scaffold_407-1510915933:268672..268865 | TCONS_00064043-exon-scaffold_407-1510915933:268672..268865 | Clytia hemisphaerica | exon |
| TCONS_00064043-exon-scaffold_407-1575043694:268672..268865 | TCONS_00064043-exon-scaffold_407-1575043694:268672..268865 | Clytia hemisphaerica | exon |
| TCONS_00064043-exon-scaffold_407-1491911889:268922..270878 | TCONS_00064043-exon-scaffold_407-1491911889:268922..270878 | Clytia hemisphaerica | exon |
| TCONS_00064043-exon-scaffold_407-1510915933:268922..270878 | TCONS_00064043-exon-scaffold_407-1510915933:268922..270878 | Clytia hemisphaerica | exon |
| TCONS_00064043-exon-scaffold_407-1575043694:268922..270878 | TCONS_00064043-exon-scaffold_407-1575043694:268922..270878 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_407 | supercontig | scaffold_407:268672..270878 + |
Blast
The following BLAST results are available for this feature:
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