TCONS_00064027 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064027
Unique NameTCONS_00064027
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1593

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064027 ID=TCONS_00064027|Name=TCONS_00064027|organism=Clytia hemisphaerica|type=transcript|length=1593bp
ACACAAGTTGAAAGGATTCAATCAAAGCTCGACGAGAAGAATTTAGAGGT
TGATGAAATGAGAGCTTTCATGAACGAGCTTGAAATCAAATTAGAGGCAA
CAGAAAATTCATTGGAACGAAAAAGGAAAGAATCAAACAACCTTCGAAAT
TCTCTCAATTCAATCACAAATGCAGATAATGATCGCCTTCAAAGTACAAC
GTTTGAATTGAATCAAGTGTTgcaagaaaaggaaaaattggAAGGTTACG
TACAAGAGCTAAATGTTAAACTGGAccaatcaaacaaagaaattatCAAT
CAATATCAATTAATACGTAATTTGGAGAACGATCTGAAAATAGCTGAAGA
AATGGCTTCAAGGAAGGTAGAGATGGAACAGGAACTTCAAAACTTATCAC
AAAATGCTCAAGAGAATGCAAGCAAAGTAGGTGAATTGGTCAACCAAAAC
AAAATGCTTCAACGACAGTTGAAACAGAGCNATAGCTGAAGAAATGGCTT
CAAGGAAGGCAGAGATGGAACAGGAACTTCAAAACTTATCACAAAATGCT
CAAGAGAATGCAAGCAAAGTAGGTGAATTGGTCaaccaaaacaaaattct
tCAACGACAGATTAAACAGAGTTCAATTGAAATGACTAATTTAGCTGATC
AAAATAGTGAACTGAACATGGCTTGTGAAGAATTTGCTAAGGAAAAAGAA
GACAGTAAGCAAAGGATTAAAGAATTGAAAGGGAAAGTGAAGTCAAGCAG
AAAAGAGGAGGGTCTCGTTGCTTCATTGGAGGAAGAAAGAGATCAATTGA
TCATGAAAAATAACGAGCTGAAGAAGAAAATGGATGAAAATAGACTTCTT
AAGGAAAATTATGACAGTTTGCTTGGGGAATATCAAACATTACAGCGAAC
ATTACGAACAAAAGATTCCGATCGAAATGAAGTGTTTGATTACATCAAGA
CCCTGGTGAACGATATGCTTCTTGGTCAAACACTACAACAACCAGTGGAT
GTCCATGATAAATCGATGCAAGCAACGCTTACCAATTTATGCAATACATC
AACCGATTATGTTCAGAGTCACAATGATCTGAAACAACGACTGGCCAATT
CTCAGCTCAAGatGAAGCAACTAATGGAGCACAATCAACAAGTGGAGAAA
GAAAATCGACAATTACTTGACGCTATTCAAGCTTTGAAAGAAGACATAGA
TGTCAAAGAATCAGAAGTGAGAGTGCGAAATTCTGAAtttaattctttga
aagatcattacaagaatgaagaagaaaagaatttgaaatcCTTGAAGGAG
TACGATGAGATATCAAGTGAGCTCAGAGGatgtttggaaaaattggaaca
agaaaatgaagacttgaAACGACAACTTGAAGGCATGAATAAGAAGATAC
TCAAAGCAAAGGTGGGACAAAAGAAATCTGACGACCAATTGAAAATTGCA
CAGCAGCATGTTGATGACATCATTAGAAAGGAGCTCCAAGAGATGAGGGA
TGACAATATGGAGCTGACACAATCTCTTGAAGCGTCCATGAAAGAAGCCA
CATACTGGGAAAATCAAGTCAATCTCAAAGATAACGAATTTAG
Run BLAST on NCBI

transcript from alignment at scaffold_407:72617..78380+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064027 ID=TCONS_00064027|Name=TCONS_00064027|organism=Clytia hemisphaerica|type=transcript|length=5764bp|location=Sequence derived from alignment at scaffold_407:72617..78380+ (Clytia hemisphaerica)
ACACAAGTTGAAAGGATTCAATCAAAGCTCGACGAGAAGAATTTAGAGGT
CATTTTTCTAAATTGTGAAGAAATCTTTGGCTGAATTTCATTCTTTATAG
TAGTGATATCCTTTTTATATTGACTTTATTTCTCTGATTTTAAGACAACC
TTTTTACACGATCTTAGCTGAAATACTAGTGATACAGTCTATCATATTTC
TGTTCAAACTCCTGATTAAACATGTTAGTTTCTTCTCAAGAAGAGGGATG
ATGAGATTTTGATAGCAGCCATCACCAGGGCTCAAACTTTACCCTGACTC
ACTCTTGTATTGCAACACATCACTTTTCTCTCTTTTCTCTAGGTTGATGA
AATGAGAGCTTTCATGAACGAGCTTGAAATCAAATTAGAGGCAACAGAAA
ATTCATTGGAACGAAAAAGGAAAGAATCAAACAACCTTCGAAATTCTCTC
AATTCAATCACAAATGCAGATAATGATCGCGTATGTAGAAAATTTATGCT
ACTGAAAAATTTTAATCTTCCAGGCCCtcaatattttgtcaaaaaagcTA
TTCTGAACACTTTATCCCAGGAATTCGTTTTCAAATTGGTTCAAAATGAA
TCCTACTTAGCTTTTTTAACCCAACCCTAccccaaaaaataaaaagtatt
acaaatttttaTTGATCAAGAAACCCAACAAAACTATCAAAAgactttct
taaaatttttagattacTGGTgtgttttcatgaaaaaaatacttgcTAAC
AAATACTAAAGCTGTTTCTCTTTTCGTTAGCTTCAAAGTACAACGTTTGA
ATTGAATCAAGTGTTgcaagaaaaggaaaaattggAAGGTTACGTACAAG
AGCTAAATGTTAAACTGGAccaatcaaacaaagaaattatCAATCAATAT
CAATTAATACGTAATTTGGAGAACGATCTGAAAATAGGTGAACGTCTTAC
CAATTTTCATGCTCTGgaggtttttttttaacatgCCACCCCTTTTTGAC
AAAAGGAAGTAATCCACATGTTTatgaattttaactttttttgcagaaat
ggacgtttttaacttttttggaaaagggCGCTATTATTTGGAAATTAGAC
GAAAATGAATAAATGTAGTATTTAAATgtagtatgaagtaagccctaaat
actaatgtatcaactactaacaaacaaaacttgatttacaagcaggaata
tctaaccaaacgacgtttgatagcttgaacggtcaactggattttcttta
tgatgaacccagtctgcggccgggtcagaaaatatttttttcacccAGCc
agtttccggaaacactacaatTTTTACTATTAAAGTTCCAGAGCAGAACA
CTCTAGTCATGTTTTAATATATTTAGTCTCCAATATTTACAATAATTATA
TTTAGTATAGAGTAACcacttaaattaaaaaattatcattttctttATCA
ATAGCTGAAGAAATGGCTTCAAGGAAGGTAGAGATGGAACAGGAACTTCA
AAACTTATCACAAAATGCTCAAGAGAATGCAAGCAAAGTAGGTGAATTGG
TCAACCAAAACAAAATGCTTCAACGACAGTTGAAACAGAGCNATAGCTGA
AGAAATGGCTTCAAGGAAGGCAGAGATGGAACAGGAACTTCAAAACTTAT
CACAAAATGCTCAAGAGAATGCAAGCAAAGTAGGTGAATTGGTCaaccaa
aacaaaattcttCAACGACAGATTAAACAGAGTTCAATTGAAATGACTAA
TTTAGCTGATCAAAATAGTGAACTGAACATGGCTTGTGAAGAATTTGCTA
AGGAAAAAGAAGACAGTAAGCAAAGGATTAAAGGTAAGTTTTTTTAAACC
ATCTATTAAGCTTTTATAATCTCATACCTTTATTTAATACCTTTACtttt
tactaatgaaaacaaataACCATGCTCGAAATTTATACTTTAATTCAAAC
AAACTATTATAGTGAACATGTGAAACAAAAGTTTGCAAGCCGATTTAAAA
CGAAATGTTACAGTTCTCTGTAGTCTACAAATTTATTTACACTGTAATTT
AACACTTACTTCATGTTTGTTTTGTTCGAACTTTGCAACTGATTAGCTCC
TCTTTGTAagctggaaaattttttttttccttgtaATTCTAGATATATAA
CATGTAACGCATTAAATCTTTTTagtaaagtttttgattttgacattcTC
TTTTACTTTAGAATTGAAAGGGAAAGTGAAGTCAAGCAGAAAAGAGGAGG
GTCTCGTTGCTTCATTGGAGGAAGAAAGAGATCAATTGATCATGAAAAAT
AACGAGCTGAAGAAGAAAATGGATGAAAATAGACTTCTTAAGGTATTCTT
TCTGCCACCAGTCACCCTAAATATCAACAATAGTCAGTTAGGCAAGAAAA
GTTAATCAATCTAAATTTTTACTTGCAACTGAAATTTTGAAGCTCTTCAG
CTGCATCATGAGCAGCATTCTGAATCATTTGCTTAGTTTCCAATACAAAA
TCTTTTGatgtttcaatttatttttgagtAGGATAAAGAGGTTTTCAGCT
TAGATCTAAATGGTATGCATGTTTTTATGTATTGAACCCTTTTGTGCATT
CAAGGAAAATTATGACAGTTTGCTTGGGGAATATCAAACATTACAGCGAA
CATTACGAACAAAAGATTCCGATCGAAATGAAGTGTTTGATTACATCAAG
ACCCTGGTGAACGATATGCTTCTTGGTCAAACACTACAACAACCAGTGGA
TGTCCATGATAAATCGATGCAAGCAACGCTTACCAATTTATGCAATACAT
CAACCGATTATGTTCAGAGTCACAATGATCTGAAACAACGACTGGCCAAT
TCTCAGCTCAAGGTTTGTGATTTTTCTATGTCTATTTTAATTTGGGCAGT
TTTTTCCAGTTTTggattagtttttttttcacacttCCATTTTTATTTTC
CTAGGACTGACTATAGCCCCAATGATTAAACTCGTTTTcttagattttaa
agatttaaaaactcAATCTTAATGATGAGTATTTTAGAAAGTCACACTTA
AAAAGGTCATTATTTTTAACAATGTCGATAAAGTTTTAATGAGAATCTGA
CAAAACTctgacaaaattttgaaaaattacaagaTATATTGTCAAATTAC
TGCCAGAGCCTGGTTACACTTTTAAAAGACTTGACATATTGAACATTACA
GAAAAATACTTTCTAGAACTGAtggttttgtatttttttaagtatttttt
gtatttttttttcatagatGAAGCAACTAATGGAGCACAATCAACAAGTG
GAGAAAGAAAATCGACAATTACTTGACGCTATTCAAGCTGTATGTTTCTT
TGGACTACCACAAGTAGTCTGTCATTTCATTCAAAATAGTGTGTTATTCA
GTAGGTCTTATCGATAATAATGAGGTTACAATTTTCGATTATCATATTTC
AATATTCCTCAATCAACAAGTTTTCATACATAGCTCAGTGTGCCAATCTT
CAGTGGAATGATACTTTCCTCTCAAGAGTGTTACTTTGTTTAAATACACC
GTTGAGATACCTTAGAATCTTATCCGTTATCTGGTAGACAAGAAATTCTG
CCTTGAGTCCATAGTAATCGTTTTATTCGTTCTCATTTTCAGTTGAAAGA
AGACATAGATGTCAAAGAATCAGAAGTGAGAGTGCGAAATTCTGAAttta
attctttgaaagatcattacaagaatgaagaagaaaaggttttttggttt
attctttaaaggttttatttggACATaattgttcccgtttcatatcagac
gcATATTtaatatcaggacagtgtctgcctattgttatatgctgatataa
aaaaacttgctccacatccgtgtcaattccatgtgaaaaaagcttgtaaa
ttgaaattgacgagtaagcaaacgatgttactcttatttaaaacctttaa
caGTCTATTGGACTTTATTAGAGTCAGGATTAGAATCAATACATTTTGGT
TGgtttcacgtttttttattagaacatccaaaatttttgaagcctttgNG
AATCAATACATTTTGGTTGgtttcacgtttttttattagaacatccaaat
tttttgaagcctttgaatgttcttaactttttgagttttaagcctaaaaa
tgttttacaGTGTTCTTTTTCTTGCCGTTTCGTGGGTagtttttttgcaa
tttcctaagaaattgggtgagTTGTAAAGCCTTAAAGGTTTGAATAAAAg
gccttataaaaaaaacgcgtATACTTAAACATGTTTTTGTAAAGGCATTG
AGAAGACCTTTATTCTCCTGATTCATGTTGATTCATGCAGGTGGTTGGTA
ACAGGGATAGTTAGTTAAATTTGGGCGTCAACACTCAGTATTTCTTGTCA
CTAAGTCAttcatttcttttcatttcagaatttgaaatcCTTGAAGGAGT
ACGATGAGATATCAAGTGAGCTCAGAGGatgtttggaaaaattggaacaa
gaaaatgaagacttgaAACGACAACTTGAAGGCATGAATAAGAAGGTTAA
CCGAACATTTATTAGCAACCAAAATTGTATTATTTTAAGATTTACGAAAG
TTCTGCTCTTTATACAAACGATCAAAATGTCTAGCTGTCATTTTGGTCAT
AGCATTTATCTTGATTCCTATTGAAAGAGATAACGTTTAAGGTAAAACAG
GAGTATCAAAATGATTCTGTTCTATTTAATGAAAGCATCTCACTTCACTT
CATTATCCTAAAAGATACTCAAAGCAAAGGTGGGACAAAAGAAATCTGAC
GACCAACTGAAGATCGCACAGCAGCATGTTGATGACATCATTAGAAAGGA
GCTCCAAGAGGTAGCATTCTCATTGTTGTACAGTGGGCCGTCTAAGCTAT
TGATaccttatataaaacactagatagggctactctgtatttcccaagca
acggcaggtgaagcaaaataatgcaccatctttgctgaaagtaggtcaca
gtaggtcacagttcggtaccggcaatttgttcaaccaagcaaaaaaaacc
TGAATGGTGCGAAGCGACGAGGTGAGGGATAGGCTTAAGGTCAACTTGGA
ATTTTCAGTGTCAATTAGTTTTGACAACCTATAGTAACCAATTAAAATAC
AGTACACGTTTTAATAAGATAGTGCAAGTCTGATATGGTTTCTCNTATCT
TAAAAGATACTCAAAGCAAAGGTGGGACAAAAGAAATCTGACGACCAATT
GAAAATTGCACAGCAGCATGTTGATGACATCATTAGAAAGGAGCTCCAAG
AGGTAGCATTCTCATTGTTGTACAGTGGGCCGTCTAAGCCATTGATacct
tatataaaacactagatagagctactctgtatttcccaagcaacatTAGG
TTaagcaaaataatccgccatctttgctgaaagtaggtcacagttcggta
ccggcaatttgttcaaccaAGCAAGAAAAAACCTAAATGGTGCGAAGCGA
CGAGGTGAAGGATAGGCTTAAGGTCAACTTGGAATTTTCAGTGTCAATTA
GTTTTGACAACCTATAGTAACCAAGTAAAATACAGTACACGTTTTAATAA
GATAGTGCAAGTCTATAATATGGTTTCTTGGCTATTTTGAAAAGTAGATT
TTTCATTCACTAGATGAGGGATGACAATATGGAGCTGACACAATCTCTTG
AAGCGTCCATGAAAGAAGCCACATACTGGGAAAATCAAGTCAATCTCAAA
GATAACGAATTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040147XLOC_040147Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064027-exon-scaffold_407-1491911889:72617..72664TCONS_00064027-exon-scaffold_407-1491911889:72617..72664Clytia hemisphaericaexon
TCONS_00064027-exon-scaffold_407-1510915933:72617..72664TCONS_00064027-exon-scaffold_407-1510915933:72617..72664Clytia hemisphaericaexon
TCONS_00064027-exon-scaffold_407-1575043694:72617..72664TCONS_00064027-exon-scaffold_407-1575043694:72617..72664Clytia hemisphaericaexon
TCONS_00064027-exon-scaffold_407-1491911889:72959..73096TCONS_00064027-exon-scaffold_407-1491911889:72959..73096Clytia hemisphaericaexon
TCONS_00064027-exon-scaffold_407-1510915933:72959..73096TCONS_00064027-exon-scaffold_407-1510915933:72959..73096Clytia hemisphaericaexon
TCONS_00064027-exon-scaffold_407-1575043694:72959..73096TCONS_00064027-exon-scaffold_407-1575043694:72959..73096Clytia hemisphaericaexon
TCONS_00064027-exon-scaffold_407-1491911889:73397..73553TCONS_00064027-exon-scaffold_407-1491911889:73397..73553Clytia hemisphaericaexon
TCONS_00064027-exon-scaffold_407-1510915933:73397..73553TCONS_00064027-exon-scaffold_407-1510915933:73397..73553Clytia hemisphaericaexon
TCONS_00064027-exon-scaffold_407-1575043694:73397..73553TCONS_00064027-exon-scaffold_407-1575043694:73397..73553Clytia hemisphaericaexon
TCONS_00064027-exon-scaffold_407-1491911889:74071..74449TCONS_00064027-exon-scaffold_407-1491911889:74071..74449Clytia hemisphaericaexon
TCONS_00064027-exon-scaffold_407-1510915933:74071..74449TCONS_00064027-exon-scaffold_407-1510915933:74071..74449Clytia hemisphaericaexon
TCONS_00064027-exon-scaffold_407-1575043694:74071..74449TCONS_00064027-exon-scaffold_407-1575043694:74071..74449Clytia hemisphaericaexon
TCONS_00064027-exon-scaffold_407-1491911889:74828..74958TCONS_00064027-exon-scaffold_407-1491911889:74828..74958Clytia hemisphaericaexon
TCONS_00064027-exon-scaffold_407-1510915933:74828..74958TCONS_00064027-exon-scaffold_407-1510915933:74828..74958Clytia hemisphaericaexon
TCONS_00064027-exon-scaffold_407-1575043694:74828..74958TCONS_00064027-exon-scaffold_407-1575043694:74828..74958Clytia hemisphaericaexon
TCONS_00064027-exon-scaffold_407-1491911889:75221..75478TCONS_00064027-exon-scaffold_407-1491911889:75221..75478Clytia hemisphaericaexon
TCONS_00064027-exon-scaffold_407-1510915933:75221..75478TCONS_00064027-exon-scaffold_407-1510915933:75221..75478Clytia hemisphaericaexon
TCONS_00064027-exon-scaffold_407-1575043694:75221..75478TCONS_00064027-exon-scaffold_407-1575043694:75221..75478Clytia hemisphaericaexon
TCONS_00064027-exon-scaffold_407-1491911889:75884..75955TCONS_00064027-exon-scaffold_407-1491911889:75884..75955Clytia hemisphaericaexon
TCONS_00064027-exon-scaffold_407-1510915933:75884..75955TCONS_00064027-exon-scaffold_407-1510915933:75884..75955Clytia hemisphaericaexon
TCONS_00064027-exon-scaffold_407-1575043694:75884..75955TCONS_00064027-exon-scaffold_407-1575043694:75884..75955Clytia hemisphaericaexon
TCONS_00064027-exon-scaffold_407-1491911889:76259..76354TCONS_00064027-exon-scaffold_407-1491911889:76259..76354Clytia hemisphaericaexon
TCONS_00064027-exon-scaffold_407-1510915933:76259..76354TCONS_00064027-exon-scaffold_407-1510915933:76259..76354Clytia hemisphaericaexon
TCONS_00064027-exon-scaffold_407-1575043694:76259..76354TCONS_00064027-exon-scaffold_407-1575043694:76259..76354Clytia hemisphaericaexon
TCONS_00064027-exon-scaffold_407-1491911889:77045..77161TCONS_00064027-exon-scaffold_407-1491911889:77045..77161Clytia hemisphaericaexon
TCONS_00064027-exon-scaffold_407-1510915933:77045..77161TCONS_00064027-exon-scaffold_407-1510915933:77045..77161Clytia hemisphaericaexon
TCONS_00064027-exon-scaffold_407-1575043694:77045..77161TCONS_00064027-exon-scaffold_407-1575043694:77045..77161Clytia hemisphaericaexon
TCONS_00064027-exon-scaffold_407-1491911889:77823..77918TCONS_00064027-exon-scaffold_407-1491911889:77823..77918Clytia hemisphaericaexon
TCONS_00064027-exon-scaffold_407-1510915933:77823..77918TCONS_00064027-exon-scaffold_407-1510915933:77823..77918Clytia hemisphaericaexon
TCONS_00064027-exon-scaffold_407-1575043694:77823..77918TCONS_00064027-exon-scaffold_407-1575043694:77823..77918Clytia hemisphaericaexon
TCONS_00064027-exon-scaffold_407-1491911889:78280..78380TCONS_00064027-exon-scaffold_407-1491911889:78280..78380Clytia hemisphaericaexon
TCONS_00064027-exon-scaffold_407-1510915933:78280..78380TCONS_00064027-exon-scaffold_407-1510915933:78280..78380Clytia hemisphaericaexon
TCONS_00064027-exon-scaffold_407-1575043694:78280..78380TCONS_00064027-exon-scaffold_407-1575043694:78280..78380Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_407supercontigscaffold_407:72617..78380 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.366756	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.0584084	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064027 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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