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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00064016 ID=TCONS_00064016|Name=TCONS_00064016|organism=Clytia hemisphaerica|type=transcript|length=1356bp
ctggcacttggcttgattgcgggccttccgtataaataaacatccggact
tatggGTGGTAAAGATGGCGTTGATAGCTGCCGCCTCATTTATtcaatgt
ttgttattcaaattaagtgctaccgcatccgcccttttttcaatttcgcg
acattttttcaatttagtctgtttgtttcttgatggaaaccagcccaagt
tgtttcgtatttttcccgcacaagtcacttttattacaaaactgttatcg
ttttaaacatgagcaactgatccagaatacaaggtaattatttttacaac
tcacactttttaattatatacattaattgacatcttgatattacagctat
cttgttagatgttttgttttgagagttctagcaatagtttatcgttcaac
ttggagaggtaatgtttgtaaacatagaattttttttcataacagttatt
tggggggtcggaattaggcagtggtgtcggatttaggaaTTCTCACGGTA
TCATGGGCTTGAAATAACGGTCtcacatcggacattgtccgacccaaata
gcttcatgtccgactgaataatgatatttttcaagctaaagcaaccctga
tcagacattttgtccgacccacttgaaatcgttatttagAGTCTTGAACT
ATGGAACATTTTTCAAGTTTCTAATGCGCTTTGGCTGAGTAGCTTTGCAC
CTTGTATTGCTAATGACCGTGCTGTCACGTAATGTCGAATTATTTGGACT
ATGTACTTGGTAACACACATTCCACCTAGAGATCTGCAGACCAGATATGT
GCGCACAAGTTTTAAGAACAATTATCGATATCGGTCTTTTATTTCAAATG
TCTGGTCTTTTTTTCAAACGTCGAACGAAATGATtcgaaatgttaaaaaa
ataaacaaactcagTAGAGACGAGGGAAGGAAGAAAAAGAGTTAATTCTG
TCAGAAAAAATGTAAGTCTAGAAAGTTTGGTGGTGTTTCAGCtttccaaa
gaaatttatcAGAAGTTTTTGGGCTTCAAGTGGAATCTTGGAATGTAACT
TCAGAAGTCTCTTTACAAGTATTGAATATTTTAATAACACGTTTAACACC
TCTTCAAGCGATGGTTTTCTCATCCAGCAACAGAAGCAATCATGCAAAGC
AGAAAACTTAGGTATATTTTTATAACACAGGATTCAAAAACGTTTGTCAC
ACATTATATATTGGAATTTTTAAGCTGTGTTGAGAGTGATTCTTATTATT
TACACAATCTATATGGTACGTAGGTGGTGAGgtcttttttagtttttggt
GGAGTCTCTTCTGACAAAAGATATTGAATTGAAGAtatctcaggattgaa
tcatca Run BLAST on NCBI transcript from alignment at scaffold_406:31459..33595- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00064016 ID=TCONS_00064016|Name=TCONS_00064016|organism=Clytia hemisphaerica|type=transcript|length=2137bp|location=Sequence derived from alignment at scaffold_406:31459..33595- (Clytia hemisphaerica)
CTGGCACTTGGCTTGATTGCGGGCCTTCCGTATAAATAAACATCCGGACT
TATGGGTGGTAAAGATGGCGTTGATAGCTGCCGCCTCATTTATTCAATGT
TTGTTATTCAAATTAAGTGCTACCGCATCCGCCCTTTTTTCAATTTCGCG
ACATTTTTTCAATTTAGTCTGTTTGTTTCTTGATGGAAACCAGCCCAAGT
TGTTTCGTATTTTTCCCGCACAAGTCACTTTTATTACAAAACTGTTATCG
TTTTAAACATGAGCAACTGATCCAGAATACAAGGTAATTATTTTTACAAC
TCACACTTTTTAATTATATACATTAATTGACATCTTGATATTACAGCTAT
CTTGTTAGATGTTTTGTTTTGAGAGTTCTAGCAATAGTTTATCGTTCAAC
TTGGAGAGGTAATGTTTGTAAACATAGAATTTTTTTTCATAACAGTTATT
TGGGGGGTCGGAATTAGGCAGTGGTGTCGGATTTAGGAATTCTCACGGTA
TCATGGGCTTGAAATAACGGTCTCACATCGGACATTGTCCGACCCAAATA
GCTTCATGTCCGACTGAATAATGATATTTTTCAAGCTAAAGCAACCCTGA
TCAGACATTTTGTCCGACCCACTTGAAATCGTTATTTAGAGTCTTGAACT
ATGGAACATTTTTCAAGTTTCTAATGCGCTTTGGCTGAGTAGCTTTGCAC
CTTGTATTGCTAATGACCGTGCTGTCACGTAATGTCGAATTATTTGGACT
ATGTACTTGGTAACACACATTCCACCTAGAGGCGGGTTGTCTTTTGATTT
GCATTTGCATTGATGTTTGGTATTATGCTTTTTAATGATTTTTTTGAAAT
TTCGACATGGAAAAAAAGTCAGTTTTTTGAAAATAACTTTCGAACTACTT
TTTCAAATTTAATGTATGATAGCTCAAAATTCAAGTTAGAGCTTCCTCTA
TACAATAAAAAAGGAATGAACAAAAAATTTAAATCCTGAAGCTCACAATA
TCTCGACAAACCTGTATACTTTTTTTTGGTGCACCCGGTATATATATTTT
TACTGATCTTTTGCACAACAATGCAAAAATGTGACCAACCCTGATATTGG
TAAAAAAAGCTAGGATAGAATTTTTTGTTTTCGATTTTTTAGTTTAATCT
TTTCAGGGGGTACAATAGCCTTGTATGTACCAAAAAATTGTCTTCTTTCT
CCTTCAAATAGTCATAAAAATTGAATTGTATACAAATTGAACAAAAAGTA
AGGTCAGAGGCATATGGGATGTTCTGGAGTTTTTATAAGATACTTCACTA
ATTGGTCATTAAAAGTAACAGAGATAACGCGATAACTTTTAGAAAAAGTA
ACAAAATTGTTTTATTACAGGTTAACGACCAACTAAATCAAATAAGAGCT
TGTAAAAACTCCAGCTTGTCCCAGGCATATGCAAAATTTATCTAGCTTTC
CATCGGTTATACTTTTATTGTGTCCCCATCATGCGAAAGTAAAAAAACAA
CCCCCTGGTATGACTTATTCTGTAATTTTGTTTTCTAAAGAATTTTGTTT
TGATTTATAAAGATCTGCAGACCAGATATGTGCGCACAAGTTTTAAGAAC
AATTATCGATATCGGTCTTTTATTTCAAATGTCTGGTCTTTTTTTCAAAC
GTCGAACGAAATGATTCGAAATGTTAAAAAAATAAACAAACTCAGTAGAG
ACGAGGGAAGGAAGAAAAAGAGTTAATTCTGTCAGAAAAAATGTAAGTCT
AGAAAGTTTGGTGGTGTTTCAGCTTTCCAAAGAAATTTATCAGAAGTTTT
TGGGCTTCAAGTGGAATCTTGGAATGTAACTTCAGAAGTCTCTTTACAAG
TATTGAATATTTTAATAACACGTTTAACACCTCTTCAAGCGATGGTTTTC
TCATCCAGCAACAGAAGCAATCATGCAAAGCAGAAAACTTAGGTATATTT
TTATAACACAGGATTCAAAAACGTTTGTCACACATTATATATTGGAATTT
TTAAGCTGTGTTGAGAGTGATTCTTATTATTTACACAATCTATATGGTAC
GTAGGTGGTGAGGTCTTTTTTAGTTTTTGGTGGAGTCTCTTCTGACAAAA
GATATTGAATTGAAGATATCTCAGGATTGAATCATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00064016-exon-scaffold_406-1575043694:32815..33595 | TCONS_00064016-exon-scaffold_406-1575043694:32815..33595 | Clytia hemisphaerica | exon |
| TCONS_00064016-exon-scaffold_406-1575043694:31459..32033 | TCONS_00064016-exon-scaffold_406-1575043694:31459..32033 | Clytia hemisphaerica | exon |
| TCONS_00064016-exon-scaffold_406-1510915933:32815..33595 | TCONS_00064016-exon-scaffold_406-1510915933:32815..33595 | Clytia hemisphaerica | exon |
| TCONS_00064016-exon-scaffold_406-1510915933:31459..32033 | TCONS_00064016-exon-scaffold_406-1510915933:31459..32033 | Clytia hemisphaerica | exon |
| TCONS_00064016-exon-scaffold_406-1491911889:32815..33595 | TCONS_00064016-exon-scaffold_406-1491911889:32815..33595 | Clytia hemisphaerica | exon |
| TCONS_00064016-exon-scaffold_406-1491911889:31459..32033 | TCONS_00064016-exon-scaffold_406-1491911889:31459..32033 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_406 | supercontig | scaffold_406:31459..33595 - |
Blast
The following BLAST results are available for this feature:
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