TCONS_00064005 (transcript) - C. hemisphaerica

Overview
NameTCONS_00064005
Unique NameTCONS_00064005
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length241

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00064005 ID=TCONS_00064005|Name=TCONS_00064005|organism=Clytia hemisphaerica|type=transcript|length=241bp
CGTCTAGATGGTTTTTCAAACGACACCTACGATTTGCTTCTTCTTCGTCA
ACCACTTTGATGAGGTTTGAGAATGCATCCTCTAAAAATTCTTTTGCTTC
TGTCATCAGACAATAGTGATCTCGTTGGCTTGGGTAATCTTCCAAACATC
CCTCACACATTTCTTTTTTCACGtcaaaaactttattatttatttGTTCC
AAAAACATCAGAATCATATCATCTTTGTATTTCAATTGTTC
Run BLAST on NCBI

transcript from alignment at scaffold_405:3622..3862

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00064005 ID=TCONS_00064005|Name=TCONS_00064005|organism=Clytia hemisphaerica|type=transcript|length=241bp|location=Sequence derived from alignment at scaffold_405:3622..3862 (Clytia hemisphaerica)
GAACAATTGAAATACAAAGATGATATGATTCTGATGTTTTTGGAACaaat
aaataataaagtttttgaCGTGAAAAAAGAAATGTGTGAGGGATGTTTGG
AAGATTACCCAAGCCAACGAGATCACTATTGTCTGATGACAGAAGCAAAA
GAATTTTTAGAGGATGCATTCTCAAACCTCATCAAAGTGGTTGACGAAGA
AGAAGCAAATCGTAGGTGTCGTTTGAAAAACCATCTAGACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040130XLOC_040130Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00064005-exon-scaffold_405-1491911889:3622..3862TCONS_00064005-exon-scaffold_405-1491911889:3622..3862Clytia hemisphaericaexon
TCONS_00064005-exon-scaffold_405-1510915933:3622..3862TCONS_00064005-exon-scaffold_405-1510915933:3622..3862Clytia hemisphaericaexon
TCONS_00064005-exon-scaffold_405-1575043694:3622..3862TCONS_00064005-exon-scaffold_405-1575043694:3622..3862Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_405supercontigscaffold_405:3622..3862 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.885097	0	3.00645	0	9.54882	2.8296	5.42046	2.13063	2.83219	4.29927	0.896721	4.58705	2.74315	3.54399	1.50776	0.539353	0	1.36206	0	0	0.855762	0	0	0	4.75144	1.69622	0	1.29523	0.982388	1.0009
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00064005 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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