TCONS_00063990 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063990
Unique NameTCONS_00063990
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length222

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063990 ID=TCONS_00063990|Name=TCONS_00063990|organism=Clytia hemisphaerica|type=transcript|length=222bp
GGGTCGGTGGAAAACATGGATCCCATCCATGGACTACTCCATTGGTGTAC
CTGTTGGAGTACCCCGATATAATTCACAGACCAGAATGGGAAAACTCGTT
TCTTGAATTACAGACCAACGATAAAACGAGTTccaaaataaaagttagat
aaatcttaagggaagaaattttcgctgGAAGATATTTTTGGCGGAAATTA
TTTTcgcgaattaaaaaaaatt
Run BLAST on NCBI

transcript from alignment at scaffold_404:815239..815460

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063990 ID=TCONS_00063990|Name=TCONS_00063990|organism=Clytia hemisphaerica|type=transcript|length=222bp|location=Sequence derived from alignment at scaffold_404:815239..815460 (Clytia hemisphaerica)
aattttttttaattcgcgAAAATAATTTCCGCCAAAAATATCTTCcagcg
aaaatttcttcccttaagatttatctaacttttattttggAACTCGTTTT
ATCGTTGGTCTGTAATTCAAGAAACGAGTTTTCCCATTCTGGTCTGTGAA
TTATATCGGGGTACTCCAACAGGTACACCAATGGAGTAGTCCATGGATGG
GATCCATGTTTTCCACCGACCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040115XLOC_040115Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063990-exon-scaffold_404-1491911889:815239..815460TCONS_00063990-exon-scaffold_404-1491911889:815239..815460Clytia hemisphaericaexon
TCONS_00063990-exon-scaffold_404-1510915933:815239..815460TCONS_00063990-exon-scaffold_404-1510915933:815239..815460Clytia hemisphaericaexon
TCONS_00063990-exon-scaffold_404-1575043694:815239..815460TCONS_00063990-exon-scaffold_404-1575043694:815239..815460Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_404supercontigscaffold_404:815239..815460 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.39813	0	4.07293	5.31297	3.23402	2.55556	3.08318	2.88643	5.05215	3.75474	3.64445	0	3.18985	2.48452	1.36174	0.730677	0	0.922609	11.4717	4.00144	0	0	0	1.24992	1.28738	1.14896	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063990 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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