TCONS_00063988 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063988
Unique NameTCONS_00063988
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length737

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063988 ID=TCONS_00063988|Name=TCONS_00063988|organism=Clytia hemisphaerica|type=transcript|length=737bp
NNAACATTGACGTcttgtgctttcaaatggtttatttcttcgtcttgcct
tttcattatattctcacaagctttgatttcgtttttgaatccttcaattt
ttgatgattcATTTGAATTATATCTTTCCATTACCTGTGGAACGATTTTG
GTATAGTTTTGACACTGGAAACTTCTTGATTTGTATGACAAGCATATCTG
GATCTGGTAAAGTGGCAGTTCTGTACAAAGATAATGGACTAAACGGTGGC
ACTTCCTGCATTGTAGGGTATCTTTTAGtgcgttttcttcatttatgatg
cactttgacaggctgcaaaagtcgtttattgatggtgatttttgattatt
ttcttgaattttttccacCATCTTTGAGCATTTTTCAGACGACAACCGTC
CATATTATGACACGTGActgaatctttgaaaaaaatggtcagctctcaaa
atcaaatttcccCGTTTTTATGAGAAACttatcaaaatatcaaatataaT
ATCTTTGACTCCATGGAATGATAACTCGTCTGAGACAAAGTAACTTTGAG
CACTGAAGAGTATTTGATAACAAATTATGAAGAATGTAAACCAAAACCGg
agaaatgttttcaaataaaaaccaaaattgCATGTGGTGAAGTTTGTGAG
ACCTTTTGACATCACCTTGACTTCAAGACAAAAATTGGTTATCATGAAta
ctaaagaaaaaaacattaaaaatttaatAGAGGTGAG
Run BLAST on NCBI

protein sequence of TCONS_00063988-protein

>TCONS_00063988-protein ID=TCONS_00063988-protein|Name=TCONS_00063988-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
MVEKIQENNQKSPSINDFCSLSKCIINEENALKDTLQCRKCHRLVHYLCT
ELPLYQIQICLSYKSRSFQCQNYTKIVPQVMERYNSNESSKIEGFKNEIK
ACENIMKRQDEEINHLKAQDVNV
Run BLAST on NCBI

transcript from alignment at scaffold_404:802134..802870

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063988 ID=TCONS_00063988|Name=TCONS_00063988|organism=Clytia hemisphaerica|type=transcript|length=737bp|location=Sequence derived from alignment at scaffold_404:802134..802870 (Clytia hemisphaerica)
CTCACCTCTattaaatttttaatgtttttttctttagtaTTCATGATAAC
CAATTTTTGTCTTGAAGTCAAGGTGATGTCAAAAGGTCTCACAAACTTCA
CCACATGcaattttggtttttatttgaaaacatttctcCGGTTTTGGTTT
ACATTCTTCATAATTTGTTATCAAATACTCTTCAGTGCTCAAAGTTACTT
TGTCTCAGACGAGTTATCATTCCATGGAGTCAAAGATAttatatttgata
ttttgataaGTTTCTCATAAAAACGgggaaatttgattttgagagctgac
catttttttcaaagattcagTCACGTGTCATAATATGGACGGTTGTCGTC
TGAAAAATGCTCAAAGATGgtggaaaaaattcaagaaaataatcaaaaat
caccatcaataaacgacttttgcagcctgtcaaagtgcatcataaatgaa
gaaaacgcaCTAAAAGATACCCTACAATGCAGGAAGTGCCACCGTTTAGT
CCATTATCTTTGTACAGAACTGCCACTTTACCAGATCCAGATATGCTTGT
CATACAAATCAAGAAGTTTCCAGTGTCAAAACTATACCAAAATCGTTCCA
CAGGTAATGGAAAGATATAATTCAAATgaatcatcaaaaattgaaggatt
caaaaacgaaatcaaagcttgtgagaatataatgaaaaggcaagacgaag
aaataaaccatttgaaagcacaagACGTCAATGTTNN

Coding sequence (CDS) from alignment at scaffold_404:802134..802870

>TCONS_00063988 ID=TCONS_00063988|Name=TCONS_00063988|organism=Clytia hemisphaerica|type=CDS|length=369bp|location=Sequence derived from alignment at scaffold_404:802134..802870 (Clytia hemisphaerica)
ATGgtggaaaaaattcaagaaaataatcaaaaatcaccatcaataaacga
cttttgcagcctgtcaaagtgcatcataaatgaagaaaacgcaCTAAAAG
ATACCCTACAATGCAGGAAGTGCCACCGTTTAGTCCATTATCTTTGTACA
GAACTGCCACTTTACCAGATCCAGATATGCTTGTCATACAAATCAAGAAG
TTTCCAGTGTCAAAACTATACCAAAATCGTTCCACAGGTAATGGAAAGAT
ATAATTCAAATgaatcatcaaaaattgaaggattcaaaaacgaaatcaaa
gcttgtgagaatataatgaaaaggcaagacgaagaaataaaccatttgaa
agcacaagACGTCAATGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040113XLOC_040113Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063988-proteinTCONS_00063988-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063988-exon-scaffold_404-1491911889:802134..802870TCONS_00063988-exon-scaffold_404-1491911889:802134..802870Clytia hemisphaericaexon
TCONS_00063988-exon-scaffold_404-1510915933:802134..802870TCONS_00063988-exon-scaffold_404-1510915933:802134..802870Clytia hemisphaericaexon
TCONS_00063988-exon-scaffold_404-1575043694:802134..802870TCONS_00063988-exon-scaffold_404-1575043694:802134..802870Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_404supercontigscaffold_404:802134..802870 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.67052	6.11267	9.4684	8.17986	3.68861	3.32945	3.82124	4.46534	2.20239	2.54308	4.10495	3.83258	3.69337	4.17569	3.02341	3.02251	2.70499	3.00522	3.41082	3.37092	3.87962	4.24221	2.04604	2.13077	4.60021	5.6261	4.00744	3.00352	4.66878	3.97848
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR011011Znf_FYVE_PHD
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063988 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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