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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063986 ID=TCONS_00063986|Name=TCONS_00063986|organism=Clytia hemisphaerica|type=transcript|length=1436bp
ATGTTTCATTCTTCGTCGTGCTCTTTCTCATTTCTTTATCTCGAAAGGAA
TTATCACGGTTACTATTTAAAGTTATCTGAGCCTAGTAATGGTTATGTGA
GACCGAATATCATTTTCAATGCTCTATAGACAGGTTTCAAACGAAGCGTG
CTGACCCATGGGTTGAAAGCTGAATTTgataacataaacaaatacaacaA
ATCACGGACTATATGTCTCACAGAACAATCCAATGTTGTgtaaaatttaa
tcaaataCATCATAACGATCGCCGGTATATTACAAGCCAGGAAAGTCACC
AGGAAAACCAAAAGTAAGGCTGTGAAACTCTTGTTGAGGCGAGGCGGTGT
AGTAAATGAGTGTGTCATTGCTTGGCGTTTCTTTGCCTTcttctttaaaa
gttttaaaagataaCAAGTGATAACACTCAAAGCTAGGACAAAGAGTATT
GCAAAATGTGCAAATACGAATAAGAAACATATGTAGGTAACAGCGAAGTA
AAGGTTAGTGATGGCAGCCGATAGAAGCCAAATACCTACTACTGCGCATG
CGTAAGAGCGTCGAGTTGCAAATCTACGATATCTGATTGGATAATGAATA
AATAATAAACGGTCAGTACAAAATGCAATCAAAGTGGATGTCCGAGCTGT
GGCAGTTATGAAAAACAACATCCGGGCGACTATCAGTAAAGTCTTATAAA
ACTGTCCTTCTCTGTCCGCAGAAGCTTCTAATGAATGAGTCACAACTGCT
ACAGGGAGGACTACAGCTCCAACCATGAGATCAATAAATGCTAGATTTgt
aatcatgaacatataaggttttcgaagttttttttctgGATCCTTATAAA
CAGCCAGACAGATCAAGAAATTTCCAGTGGTGGCAACGATACAAAAAGTA
GCAGATACGATGGAGGTGAATATGGACAGGTTGATGGGTACCGAAGTATC
TGGGCATGGTACAGTGATCATGTTGTTCGAATACAGAAAGCTTTCGACGT
CGAACATTTGCATTGAAGTGTTTTTGACCCTGATTAACGGACTTTCAAGC
TGGGCTAACATGAACCTCAATTCAATAAAGGAACcaataacaataacaaa
caaatgaatttctgaaaatcaatcaaaatttggattCAACTTCTGATTTA
AGTCATCTGGAAGTGAATCGTTGAAGTAATAACCTGCTCTCTGAAAACAC
AAAATTGATTCCAAAACAAGCTATATAGTAGTATAAGGCTCGACattgat
tgtttgatttttaaGTCAAGGTGGGCAAGgtttctttcaattttacccTT
CGTGCTAATTGATATAAATTTCGATTTTACGAGGATTAATGGTTCCTAAA
TATTGATGTAAACACttttaaaagtgaaagaaaGCACTTAATCAAGCCAT
GGGGAAGCTGGGTCAAATTACCCCGTTCAATGATTG Run BLAST on NCBI protein sequence of TCONS_00063986-protein >TCONS_00063986-protein ID=TCONS_00063986-protein|Name=TCONS_00063986-protein|organism=Clytia hemisphaerica|type=polypeptide|length=322bp
MLAQLESPLIRVKNTSMQMFDVESFLYSNNMITVPCPDTSVPINLSIFTS
IVSATFCIVATTGNFLICLAVYKDPEKKLRKPYMFMITNLAFIDLMVGAV
VLPVAVVTHSLEASADREGQFYKTLLIVARMLFFITATARTSTLIAFCTD
RLLFIHYPIRYRRFATRRSYACAVVGIWLLSAAITNLYFAVTYICFLFVF
AHFAILFVLALSVITCYLLKLLKKKAKKRQAMTHSFTTPPRLNKSFTALL
LVFLVTFLACNIPAIVMMYLIKFYTTLDCSVRHIVRDLLYLFMLSNSAFN
PWVSTLRLKPVYRALKMIFGLT Run BLAST on NCBI transcript from alignment at scaffold_404:765795..767230 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063986 ID=TCONS_00063986|Name=TCONS_00063986|organism=Clytia hemisphaerica|type=transcript|length=1436bp|location=Sequence derived from alignment at scaffold_404:765795..767230 (Clytia hemisphaerica)
CAATCATTGAACGGGGTAATTTGACCCAGCTTCCCCATGGCTTGATTAAG
TGCtttctttcacttttaaaaGTGTTTACATCAATATTTAGGAACCATTA
ATCCTCGTAAAATCGAAATTTATATCAATTAGCACGAAgggtaaaattga
aagaaacCTTGCCCACCTTGACttaaaaatcaaacaatcaatGTCGAGCC
TTATACTACTATATAGCTTGTTTTGGAATCAATTTTGTGTTTTCAGAGAG
CAGGTTATTACTTCAACGATTCACTTCCAGATGACTTAAATCAGAAGTTG
aatccaaattttgattgattttcagaaattcatttgtttgttattgttat
tgGTTCCTTTATTGAATTGAGGTTCATGTTAGCCCAGCTTGAAAGTCCGT
TAATCAGGGTCAAAAACACTTCAATGCAAATGTTCGACGTCGAAAGCTTT
CTGTATTCGAACAACATGATCACTGTACCATGCCCAGATACTTCGGTACC
CATCAACCTGTCCATATTCACCTCCATCGTATCTGCTACTTTTTGTATCG
TTGCCACCACTGGAAATTTCTTGATCTGTCTGGCTGTTTATAAGGATCca
gaaaaaaaacttcgaaaaccttatatgttcatgattacAAATCTAGCATT
TATTGATCTCATGGTTGGAGCTGTAGTCCTCCCTGTAGCAGTTGTGACTC
ATTCATTAGAAGCTTCTGCGGACAGAGAAGGACAGTTTTATAAGACTTTA
CTGATAGTCGCCCGGATGTTGTTTTTCATAACTGCCACAGCTCGGACATC
CACTTTGATTGCATTTTGTACTGACCGTTTATTATTTATTCATTATCCAA
TCAGATATCGTAGATTTGCAACTCGACGCTCTTACGCATGCGCAGTAGTA
GGTATTTGGCTTCTATCGGCTGCCATCACTAACCTTTACTTCGCTGTTAC
CTACATATGTTTCTTATTCGTATTTGCACATTTTGCAATACTCTTTGTCC
TAGCTTTGAGTGTTATCACTTGttatcttttaaaacttttaaagaagAAG
GCAAAGAAACGCCAAGCAATGACACACTCATTTACTACACCGCCTCGCCT
CAACAAGAGTTTCACAGCCTTACTTTTGGTTTTCCTGGTGACTTTCCTGG
CTTGTAATATACCGGCGATCGTTATGATGtatttgattaaattttacACA
ACATTGGATTGTTCTGTGAGACATATAGTCCGTGATTtgttgtatttgtt
tatgttatcAAATTCAGCTTTCAACCCATGGGTCAGCACGCTTCGTTTGA
AACCTGTCTATAGAGCATTGAAAATGATATTCGGTCTCACATAACCATTA
CTAGGCTCAGATAACTTTAAATAGTAACCGTGATAATTCCTTTCGAGATA
AAGAAATGAGAAAGAGCACGACGAAGAATGAAACAT Coding sequence (CDS) from alignment at scaffold_404:765795..767230 >TCONS_00063986 ID=TCONS_00063986|Name=TCONS_00063986|organism=Clytia hemisphaerica|type=CDS|length=969bp|location=Sequence derived from alignment at scaffold_404:765795..767230 (Clytia hemisphaerica)
ATGTTAGCCCAGCTTGAAAGTCCGTTAATCAGGGTCAAAAACACTTCAAT
GCAAATGTTCGACGTCGAAAGCTTTCTGTATTCGAACAACATGATCACTG
TACCATGCCCAGATACTTCGGTACCCATCAACCTGTCCATATTCACCTCC
ATCGTATCTGCTACTTTTTGTATCGTTGCCACCACTGGAAATTTCTTGAT
CTGTCTGGCTGTTTATAAGGATCcagaaaaaaaacttcgaaaaccttata
tgttcatgattacAAATCTAGCATTTATTGATCTCATGGTTGGAGCTGTA
GTCCTCCCTGTAGCAGTTGTGACTCATTCATTAGAAGCTTCTGCGGACAG
AGAAGGACAGTTTTATAAGACTTTACTGATAGTCGCCCGGATGTTGTTTT
TCATAACTGCCACAGCTCGGACATCCACTTTGATTGCATTTTGTACTGAC
CGTTTATTATTTATTCATTATCCAATCAGATATCGTAGATTTGCAACTCG
ACGCTCTTACGCATGCGCAGTAGTAGGTATTTGGCTTCTATCGGCTGCCA
TCACTAACCTTTACTTCGCTGTTACCTACATATGTTTCTTATTCGTATTT
GCACATTTTGCAATACTCTTTGTCCTAGCTTTGAGTGTTATCACTTGtta
tcttttaaaacttttaaagaagAAGGCAAAGAAACGCCAAGCAATGACAC
ACTCATTTACTACACCGCCTCGCCTCAACAAGAGTTTCACAGCCTTACTT
TTGGTTTTCCTGGTGACTTTCCTGGCTTGTAATATACCGGCGATCGTTAT
GATGtatttgattaaattttacACAACATTGGATTGTTCTGTGAGACATA
TAGTCCGTGATTtgttgtatttgtttatgttatcAAATTCAGCTTTCAAC
CCATGGGTCAGCACGCTTCGTTTGAAACCTGTCTATAGAGCATTGAAAAT
GATATTCGGTCTCACATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063986-exon-scaffold_404-1491911889:765795..767230 | TCONS_00063986-exon-scaffold_404-1491911889:765795..767230 | Clytia hemisphaerica | exon |
| TCONS_00063986-exon-scaffold_404-1510915933:765795..767230 | TCONS_00063986-exon-scaffold_404-1510915933:765795..767230 | Clytia hemisphaerica | exon |
| TCONS_00063986-exon-scaffold_404-1575043694:765795..767230 | TCONS_00063986-exon-scaffold_404-1575043694:765795..767230 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_404 | supercontig | scaffold_404:765795..767230 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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