TCONS_00063969 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063969
Unique NameTCONS_00063969
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length306

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063969 ID=TCONS_00063969|Name=TCONS_00063969|organism=Clytia hemisphaerica|type=transcript|length=306bp
CATCAAGTTTGATTGGACAAAAACATATAGGGTTGACGGATAGTTTTGAA
ACACTTGATTTGGCATTGAACTTACGGAATACTGAAGAAATTGTAAAGAA
ATCAAAAGCTATCTCAGATCAAATACATTATCGATATGAAAATGGGTTGA
GAATGCCCCCACCCAACTTTCCCAATGGTTGCACCCCAATATCTACggat
tctttagaaaaagcacTGACTACCGCACGCCAATCTACCCTTAAAGGGAT
TTTGATTATAACAGACGACATCACATCCActctttcaaaaatatcaaaga
tcGAAC
Run BLAST on NCBI

protein sequence of TCONS_00063969-protein

>TCONS_00063969-protein ID=TCONS_00063969-protein|Name=TCONS_00063969-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
SSLIGQKHIGLTDSFETLDLALNLRNTEEIVKKSKAISDQIHYRYENGLR
MPPPNFPNGCTPISTDSLEKALTTARQSTLKGILIITDDITSTLSKISKI
E
Run BLAST on NCBI

transcript from alignment at scaffold_404:309995..310300

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063969 ID=TCONS_00063969|Name=TCONS_00063969|organism=Clytia hemisphaerica|type=transcript|length=306bp|location=Sequence derived from alignment at scaffold_404:309995..310300 (Clytia hemisphaerica)
GTTCgatctttgatatttttgaaagagTGGATGTGATGTCGTCTGTTATA
ATCAAAATCCCTTTAAGGGTAGATTGGCGTGCGGTAGTCAgtgctttttc
taaagaatccGTAGATATTGGGGTGCAACCATTGGGAAAGTTGGGTGGGG
GCATTCTCAACCCATTTTCATATCGATAATGTATTTGATCTGAGATAGCT
TTTGATTTCTTTACAATTTCTTCAGTATTCCGTAAGTTCAATGCCAAATC
AAGTGTTTCAAAACTATCCGTCAACCCTATATGTTTTTGTCCAATCAAAC
TTGATG

Coding sequence (CDS) from alignment at scaffold_404:309995..310300

>TCONS_00063969 ID=TCONS_00063969|Name=TCONS_00063969|organism=Clytia hemisphaerica|type=CDS|length=303bp|location=Sequence derived from alignment at scaffold_404:309995..310300 (Clytia hemisphaerica)
TTCgatctttgatatttttgaaagagTGGATGTGATGTCGTCTGTTATAA
TCAAAATCCCTTTAAGGGTAGATTGGCGTGCGGTAGTCAgtgctttttct
aaagaatccGTAGATATTGGGGTGCAACCATTGGGAAAGTTGGGTGGGGG
CATTCTCAACCCATTTTCATATCGATAATGTATTTGATCTGAGATAGCTT
TTGATTTCTTTACAATTTCTTCAGTATTCCGTAAGTTCAATGCCAAATCA
AGTGTTTCAAAACTATCCGTCAACCCTATATGTTTTTGTCCAATCAAACT
TGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040094XLOC_040094Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063969-proteinTCONS_00063969-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063969-exon-scaffold_404-1491911889:309995..310300TCONS_00063969-exon-scaffold_404-1491911889:309995..310300Clytia hemisphaericaexon
TCONS_00063969-exon-scaffold_404-1510915933:309995..310300TCONS_00063969-exon-scaffold_404-1510915933:309995..310300Clytia hemisphaericaexon
TCONS_00063969-exon-scaffold_404-1575043694:309995..310300TCONS_00063969-exon-scaffold_404-1575043694:309995..310300Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_404supercontigscaffold_404:309995..310300 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.413831	2.02435	0.49289	0	2.3495	3.51932	1.84797	3.81502	0.74059	1.70392	2.43079	2.77684	1.0377	1.33633	0	1.1249	10.8788	8.13134	1.06014	2.5855	1.25721	1.90497	3.53174	4.9031	0.501165	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063969 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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