TCONS_00063968 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063968
Unique NameTCONS_00063968
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length282

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063968 ID=TCONS_00063968|Name=TCONS_00063968|organism=Clytia hemisphaerica|type=transcript|length=282bp
GATTGAATGCATCTCAGATAAGGAGGAGATTGATAAATGCTGATTTCAAC
CAAGTTGAAGAGGTCCTCTCCAATATTTACAAAGAGGAGTTGACATTATT
TTTCAAGAATCTAAAATTGTTTTCCCGGCCTTATAAAAGCACGGAATACT
GTCAACAAATTGAAAAGTTCCTTAAAGTATTAACCAAACACgctttcaaa
tcaaaaagcaAATGTTTTAAAGATAAAATGATAATAGATGGACGTTTTGC
TGGAGAAAAAAAGTTCCTCAAATTCGTCAGCG
Run BLAST on NCBI

transcript from alignment at scaffold_404:308456..308737

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063968 ID=TCONS_00063968|Name=TCONS_00063968|organism=Clytia hemisphaerica|type=transcript|length=282bp|location=Sequence derived from alignment at scaffold_404:308456..308737 (Clytia hemisphaerica)
CGCTGACGAATTTGAGGAACTTTTTTTCTCCAGCAAAACGTCCATCTATT
ATCATTTTATCTTTAAAACATTtgctttttgatttgaaagcGTGTTTGGT
TAATACTTTAAGGAACTTTTCAATTTGTTGACAGTATTCCGTGCTTTTAT
AAGGCCGGGAAAACAATTTTAGATTCTTGAAAAATAATGTCAACTCCTCT
TTGTAAATATTGGAGAGGACCTCTTCAACTTGGTTGAAATCAGCATTTAT
CAATCTCCTCCTTATCTGAGATGCATTCAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040093XLOC_040093Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063968-exon-scaffold_404-1491911889:308456..308737TCONS_00063968-exon-scaffold_404-1491911889:308456..308737Clytia hemisphaericaexon
TCONS_00063968-exon-scaffold_404-1510915933:308456..308737TCONS_00063968-exon-scaffold_404-1510915933:308456..308737Clytia hemisphaericaexon
TCONS_00063968-exon-scaffold_404-1575043694:308456..308737TCONS_00063968-exon-scaffold_404-1575043694:308456..308737Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_404supercontigscaffold_404:308456..308737 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.481705	0.469738	1.63623	1.6008	0.649606	1.02665	1.85792	0.579788	0.811847	1.50841	0	1.28325	2.24257	3.65975	1.09411	0.587075	1.08484	0.741286	10.2413	5.89421	0.931479	2.04454	2.20925	2.51067	0.517185	3.23103	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063968 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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