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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063958 ID=TCONS_00063958|Name=TCONS_00063958|organism=Clytia hemisphaerica|type=transcript|length=1355bp
AGCGTGGAAAGGACCTATTGAGACTTTAGAAAGAATTTCCTTCAACTTAT
ATACCATTCCAAGATCCCAacgattcaaaaaatttccaggTTGCCTGGCT
ATTTCACCAGAGCATACTTTTaggaaattttgtgaaaagcCTTTCATAAT
ATTCATATCTCCGATAAAATAATAAGGGAGGTGTCCTTCTTTGAGGTGCT
TTGAAAGTTCTTGATAATATAAGGAAATGACAACTACAACGTTTTCGTTT
TCGTCCAGTTTCGTCATATTGTTGCCATTGTTCCACGGAGACCAAATCTT
GTAGTCTGAATTTGATCGTTTTTAAAGTGTATGAAGGTAAAAAACGCCCT
GTTTTATCATCCTTCAACGtcttaaaatttaaatagaAAATCATCTTGGC
GACGAGGTagcatttcttttgaaattttgtcaattctaaTGATAAGATTT
TCTCGGCAAAAGAGAAAGAAACACGCCACTCATCTGCAGGTTGAAAATAA
GTCCGATCGTTCAGCGGCTTAGCCACTAAATGACAACCTTGATCTTTAAT
CTATGTTAAGGTTTTGACTGAGATCCAGTAATGTTTTGAACCAAACCAAT
TTAGTGTACAGGCTGGCCAAAAATACAACTTAAAACAAAGTACACATAGT
CTATTCAAGATGTCTGTATTTTGGGAGGAAGTTCAACCTTTCTTATGGAA
GGCGCCAGTGGTAATGGAAAAGAAGAGGTTTCCATATAAGTCTTGTTGCG
TTGTTGGACGGTTACCAATGCTTCTTGCAAACTTTTCATATCAACAGAAG
AATGGGTATTAAGTGAAGGACCTTCTATTTTATTGTCCAGTTTCATTGAG
TTTCTTTTACACATGTCATATTTTCGAAGTTGCATTAACCCAATCGGAAG
TCCAAAATATTCTCCTGACTTAAAACCAAGCCATTCGAACATCGTCGACT
CAATGGCGGTTAAACATCGATACAATTCATCGCATGAGCGTAATCTGAAA
TAGCCAGGATACCCATCAATACTTTCTAAGAACGTTTGTGATTCTGATAA
TTGGATATGTCCTATAATATTCATTTCATCCAGCTCGAGTTCATTAGTTG
CCATAAAGCGTGGAATAAATCCACCCTCGGTAACACTTCCACTTAGAAAT
GATTCACCCTCTTTAACATATGACGAACTCCTCTCTCGAACTAGCTTGCT
GATTTCAGTATCCAGCTGATGCATCGTTGTAATGTATGAAGAAAATCTCT
TTTCGAGATCGCCATATCGTGTTTTGTTTGACTTATGATAGTTGATTTGT
TTTTTAGTAGAAGACACTACAACTACTTATCTCTCATGGAAGTTTTGACA
CATCA Run BLAST on NCBI protein sequence of TCONS_00063958-protein >TCONS_00063958-protein ID=TCONS_00063958-protein|Name=TCONS_00063958-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
MHQLDTEISKLVRERSSSYVKEGESFLSGSVTEGGFIPRFMATNELELDE
MNIIGHIQLSESQTFLESIDGYPGYFRLRSCDELYRCLTAIESTMFEWLG
FKSGEYFGLPIGLMQLRKYDMCKRNSMKLDNKIEGPSLNTHSSVDMKSLQ
EALVTVQQRNKTYMETSSFPLPLAPSIRKVELPPKIQTS Run BLAST on NCBI transcript from alignment at scaffold_404:27402..28756 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063958 ID=TCONS_00063958|Name=TCONS_00063958|organism=Clytia hemisphaerica|type=transcript|length=1355bp|location=Sequence derived from alignment at scaffold_404:27402..28756 (Clytia hemisphaerica)
TGATGTGTCAAAACTTCCATGAGAGATAAGTAGTTGTAGTGTCTTCTACT
AAAAAACAAATCAACTATCATAAGTCAAACAAAACACGATATGGCGATCT
CGAAAAGAGATTTTCTTCATACATTACAACGATGCATCAGCTGGATACTG
AAATCAGCAAGCTAGTTCGAGAGAGGAGTTCGTCATATGTTAAAGAGGGT
GAATCATTTCTAAGTGGAAGTGTTACCGAGGGTGGATTTATTCCACGCTT
TATGGCAACTAATGAACTCGAGCTGGATGAAATGAATATTATAGGACATA
TCCAATTATCAGAATCACAAACGTTCTTAGAAAGTATTGATGGGTATCCT
GGCTATTTCAGATTACGCTCATGCGATGAATTGTATCGATGTTTAACCGC
CATTGAGTCGACGATGTTCGAATGGCTTGGTTTTAAGTCAGGAGAATATT
TTGGACTTCCGATTGGGTTAATGCAACTTCGAAAATATGACATGTGTAAA
AGAAACTCAATGAAACTGGACAATAAAATAGAAGGTCCTTCACTTAATAC
CCATTCTTCTGTTGATATGAAAAGTTTGCAAGAAGCATTGGTAACCGTCC
AACAACGCAACAAGACTTATATGGAAACCTCTTCTTTTCCATTACCACTG
GCGCCTTCCATAAGAAAGGTTGAACTTCCTCCCAAAATACAGACATCTTG
AATAGACTATGTGTACTTTGTTTTAAGTTGTATTTTTGGCCAGCCTGTAC
ACTAAATTGGTTTGGTTCAAAACATTACTGGATCTCAGTCAAAACCTTAA
CATAGATTAAAGATCAAGGTTGTCATTTAGTGGCTAAGCCGCTGAACGAT
CGGACTTATTTTCAACCTGCAGATGAGTGGCGTGTTTCTTTCTCTTTTGC
CGAGAAAATCTTATCAttagaattgacaaaatttcaaaagaaatgctACC
TCGTCGCCAAGATGATTTtctatttaaattttaagaCGTTGAAGGATGAT
AAAACAGGGCGTTTTTTACCTTCATACACTTTAAAAACGATCAAATTCAG
ACTACAAGATTTGGTCTCCGTGGAACAATGGCAACAATATGACGAAACTG
GACGAAAACGAAAACGTTGTAGTTGTCATTTCCTTATATTATCAAGAACT
TTCAAAGCACCTCAAAGAAGGACACCTCCCTTATTATTTTATCGGAGATA
TGAATATTATGAAAGgcttttcacaaaatttcctAAAAGTATGCTCTGGT
GAAATAGCCAGGCAAcctggaaattttttgaatcgtTGGGATCTTGGAAT
GGTATATAAGTTGAAGGAAATTCTTTCTAAAGTCTCAATAGGTCCTTTCC
ACGCT Coding sequence (CDS) from alignment at scaffold_404:27402..28756 >TCONS_00063958 ID=TCONS_00063958|Name=TCONS_00063958|organism=Clytia hemisphaerica|type=CDS|length=570bp|location=Sequence derived from alignment at scaffold_404:27402..28756 (Clytia hemisphaerica)
ATGCATCAGCTGGATACTGAAATCAGCAAGCTAGTTCGAGAGAGGAGTTC
GTCATATGTTAAAGAGGGTGAATCATTTCTAAGTGGAAGTGTTACCGAGG
GTGGATTTATTCCACGCTTTATGGCAACTAATGAACTCGAGCTGGATGAA
ATGAATATTATAGGACATATCCAATTATCAGAATCACAAACGTTCTTAGA
AAGTATTGATGGGTATCCTGGCTATTTCAGATTACGCTCATGCGATGAAT
TGTATCGATGTTTAACCGCCATTGAGTCGACGATGTTCGAATGGCTTGGT
TTTAAGTCAGGAGAATATTTTGGACTTCCGATTGGGTTAATGCAACTTCG
AAAATATGACATGTGTAAAAGAAACTCAATGAAACTGGACAATAAAATAG
AAGGTCCTTCACTTAATACCCATTCTTCTGTTGATATGAAAAGTTTGCAA
GAAGCATTGGTAACCGTCCAACAACGCAACAAGACTTATATGGAAACCTC
TTCTTTTCCATTACCACTGGCGCCTTCCATAAGAAAGGTTGAACTTCCTC
CCAAAATACAGACATCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063958-exon-scaffold_404-1491911889:27402..28756 | TCONS_00063958-exon-scaffold_404-1491911889:27402..28756 | Clytia hemisphaerica | exon |
| TCONS_00063958-exon-scaffold_404-1510915933:27402..28756 | TCONS_00063958-exon-scaffold_404-1510915933:27402..28756 | Clytia hemisphaerica | exon |
| TCONS_00063958-exon-scaffold_404-1575043694:27402..28756 | TCONS_00063958-exon-scaffold_404-1575043694:27402..28756 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_404 | supercontig | scaffold_404:27402..28756 . |
Blast
The following BLAST results are available for this feature:
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